co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G079353

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
2	GO:0043043: peptide biosynthetic process	0.00E+00
3	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
4	GO:0042407: cristae formation	0.00E+00
5	GO:0042821: pyridoxal biosynthetic process	0.00E+00
6	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
7	GO:0043953: protein transport by the Tat complex	0.00E+00
8	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
9	GO:1901259: chloroplast rRNA processing	0.00E+00
10	GO:0010028: xanthophyll cycle	0.00E+00
11	GO:0090342: regulation of cell aging	0.00E+00
12	GO:0032544: plastid translation	0.00E+00
13	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
14	GO:0010027: thylakoid membrane organization	1.13E-21
15	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.76E-20
16	GO:0009902: chloroplast relocation	7.13E-13
17	GO:0010207: photosystem II assembly	2.74E-12
18	GO:0006364: rRNA processing	1.49E-11
19	GO:0045036: protein targeting to chloroplast	9.74E-11
20	GO:0006412: translation	1.48E-10
21	GO:0042793: transcription from plastid promoter	2.04E-10
22	GO:0016226: iron-sulfur cluster assembly	4.97E-10
23	GO:0006098: pentose-phosphate shunt	1.99E-09
24	GO:0015995: chlorophyll biosynthetic process	5.23E-09
25	GO:0045038: protein import into chloroplast thylakoid membrane	1.01E-08
26	GO:0006655: phosphatidylglycerol biosynthetic process	6.07E-07
27	GO:0009658: chloroplast organization	6.22E-07
28	GO:0045893: positive regulation of transcription, DNA-templated	7.54E-07
29	GO:0030154: cell differentiation	2.08E-06
30	GO:0009073: aromatic amino acid family biosynthetic process	2.27E-06
31	GO:0009773: photosynthetic electron transport in photosystem I	5.57E-06
32	GO:0019748: secondary metabolic process	7.94E-06
33	GO:0006546: glycine catabolic process	9.39E-06
34	GO:0006418: tRNA aminoacylation for protein translation	1.02E-05
35	GO:0006636: unsaturated fatty acid biosynthetic process	2.81E-05
36	GO:0042372: phylloquinone biosynthetic process	3.19E-05
37	GO:0009106: lipoate metabolic process	3.22E-05
38	GO:0006766: vitamin metabolic process	3.22E-05
39	GO:0009108: coenzyme biosynthetic process	3.22E-05
40	GO:0019344: cysteine biosynthetic process	4.57E-05
41	GO:0006399: tRNA metabolic process	5.40E-05
42	GO:0035304: regulation of protein dephosphorylation	1.04E-04
43	GO:0048481: plant ovule development	1.04E-04
44	GO:0006733: oxidoreduction coenzyme metabolic process	1.07E-04
45	GO:0009695: jasmonic acid biosynthetic process	1.28E-04
46	GO:0006354: DNA-templated transcription, elongation	1.69E-04
47	GO:0009117: nucleotide metabolic process	2.30E-04
48	GO:0006353: DNA-templated transcription, termination	2.30E-04
49	GO:0009965: leaf morphogenesis	3.56E-04
50	GO:0000096: sulfur amino acid metabolic process	3.96E-04
51	GO:0006569: tryptophan catabolic process	3.96E-04
52	GO:0016117: carotenoid biosynthetic process	4.67E-04
53	GO:0009306: protein secretion	6.09E-04
54	GO:0034660: ncRNA metabolic process	8.69E-04
55	GO:0010103: stomatal complex morphogenesis	9.63E-04
56	GO:0006434: seryl-tRNA aminoacylation	1.03E-03
57	GO:0018160: peptidyl-pyrromethane cofactor linkage	1.03E-03
58	GO:0006573: valine metabolic process	1.03E-03
59	GO:0006433: prolyl-tRNA aminoacylation	1.03E-03
60	GO:0032543: mitochondrial translation	1.03E-03
61	GO:0006423: cysteinyl-tRNA aminoacylation	1.03E-03
62	GO:0009069: serine family amino acid metabolic process	1.03E-03
63	GO:0071722: detoxification of arsenic-containing substance	1.03E-03
64	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	1.03E-03
65	GO:0009443: pyridoxal 5'-phosphate salvage	1.03E-03
66	GO:0010228: vegetative to reproductive phase transition of meristem	1.64E-03
67	GO:0009684: indoleacetic acid biosynthetic process	1.92E-03
68	GO:0009225: nucleotide-sugar metabolic process	2.31E-03
69	GO:0044272: sulfur compound biosynthetic process	2.31E-03
70	GO:0019464: glycine decarboxylation via glycine cleavage system	2.31E-03
71	GO:0006432: phenylalanyl-tRNA aminoacylation	2.31E-03
72	GO:0051555: flavonol biosynthetic process	2.31E-03
73	GO:0010109: regulation of photosynthesis	2.31E-03
74	GO:0010236: plastoquinone biosynthetic process	2.31E-03
75	GO:0010253: UDP-rhamnose biosynthetic process	2.31E-03
76	GO:0010192: mucilage biosynthetic process	2.31E-03
77	GO:0016556: mRNA modification	2.34E-03
78	GO:0006779: porphyrin-containing compound biosynthetic process	2.82E-03
79	GO:0009793: embryo development ending in seed dormancy	3.26E-03
80	GO:0010731: protein glutathionylation	3.91E-03
81	GO:0045226: extracellular polysaccharide biosynthetic process	3.91E-03
82	GO:0006431: methionyl-tRNA aminoacylation	3.91E-03
83	GO:0043067: regulation of programmed cell death	3.91E-03
84	GO:0009247: glycolipid biosynthetic process	3.91E-03
85	GO:0007186: G-protein coupled receptor signaling pathway	3.91E-03
86	GO:0000023: maltose metabolic process	5.11E-03
87	GO:0042545: cell wall modification	5.36E-03
88	GO:0006782: protoporphyrinogen IX biosynthetic process	5.77E-03
89	GO:0019216: regulation of lipid metabolic process	5.77E-03
90	GO:0010304: PSII associated light-harvesting complex II catabolic process	5.77E-03
91	GO:0051205: protein insertion into membrane	5.77E-03
92	GO:0045037: protein import into chloroplast stroma	5.77E-03
93	GO:0019375: galactolipid biosynthetic process	5.77E-03
94	GO:0010214: seed coat development	5.77E-03
95	GO:0030259: lipid glycosylation	5.77E-03
96	GO:0006631: fatty acid metabolic process	6.13E-03
97	GO:0006414: translational elongation	6.51E-03
98	GO:0010315: auxin efflux	7.88E-03
99	GO:0009772: photosynthetic electron transport in photosystem II	7.88E-03
100	GO:0009813: flavonoid biosynthetic process	7.88E-03
101	GO:0015994: chlorophyll metabolic process	7.88E-03
102	GO:0042742: defense response to bacterium	8.27E-03
103	GO:0043085: positive regulation of catalytic activity	9.98E-03
104	GO:0006200: obsolete ATP catabolic process	9.98E-03
105	GO:0007005: mitochondrion organization	1.02E-02
106	GO:0006184: obsolete GTP catabolic process	1.02E-02
107	GO:0045454: cell redox homeostasis	1.23E-02
108	GO:0030003: cellular cation homeostasis	1.28E-02
109	GO:0010583: response to cyclopentenone	1.28E-02
110	GO:0033014: tetrapyrrole biosynthetic process	1.28E-02
111	GO:0015693: magnesium ion transport	1.55E-02
112	GO:0043039: tRNA aminoacylation	1.55E-02
113	GO:0009735: response to cytokinin	1.70E-02
114	GO:0045087: innate immune response	1.85E-02
115	GO:0009072: aromatic amino acid family metabolic process	1.85E-02
116	GO:0006662: glycerol ether metabolic process	1.85E-02
117	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.85E-02
118	GO:0019252: starch biosynthetic process	2.10E-02
119	GO:0019761: glucosinolate biosynthetic process	2.15E-02
120	GO:0009790: embryo development	2.15E-02
121	GO:0009407: toxin catabolic process	2.16E-02
122	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.84E-02
123	GO:0015979: photosynthesis	3.17E-02
124	GO:0031408: oxylipin biosynthetic process	3.59E-02
125	GO:0051607: defense response to virus	3.59E-02
126	GO:0048316: seed development	3.59E-02
127	GO:0008033: tRNA processing	3.59E-02
128	GO:0009767: photosynthetic electron transport chain	3.59E-02
129	GO:0015996: chlorophyll catabolic process	3.98E-02
130	GO:0010197: polar nucleus fusion	3.98E-02
131	GO:0008652: cellular amino acid biosynthetic process	4.04E-02
132	GO:0006812: cation transport	4.04E-02
133	GO:0007018: microtubule-based movement	4.49E-02
134	GO:0030001: metal ion transport	4.49E-02
135	GO:0009657: plastid organization	4.82E-02
136	GO:0019684: photosynthesis, light reaction	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
2	GO:0046408: chlorophyll synthetase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
5	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
6	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
7	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
8	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
9	GO:0005048: signal sequence binding	0.00E+00
10	GO:0005504: fatty acid binding	0.00E+00
11	GO:0003735: structural constituent of ribosome	5.29E-09
12	GO:0004812: aminoacyl-tRNA ligase activity	1.46E-05
13	GO:0019843: rRNA binding	2.23E-04
14	GO:0004659: prenyltransferase activity	2.30E-04
15	GO:0004765: shikimate kinase activity	2.30E-04
16	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.03E-03
17	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.03E-03
18	GO:0035250: UDP-galactosyltransferase activity	1.03E-03
19	GO:0010280: UDP-L-rhamnose synthase activity	1.03E-03
20	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	1.03E-03
21	GO:0070402: NADPH binding	1.03E-03
22	GO:0008194: UDP-glycosyltransferase activity	1.03E-03
23	GO:0004817: cysteine-tRNA ligase activity	1.03E-03
24	GO:0050377: UDP-glucose 4,6-dehydratase activity	1.03E-03
25	GO:0034256: chlorophyll(ide) b reductase activity	1.03E-03
26	GO:0004827: proline-tRNA ligase activity	1.03E-03
27	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.03E-03
28	GO:0004418: hydroxymethylbilane synthase activity	1.03E-03
29	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.03E-03
30	GO:0004828: serine-tRNA ligase activity	1.03E-03
31	GO:0000049: tRNA binding	1.92E-03
32	GO:0004826: phenylalanine-tRNA ligase activity	2.31E-03
33	GO:0004853: uroporphyrinogen decarboxylase activity	2.31E-03
34	GO:0045430: chalcone isomerase activity	2.31E-03
35	GO:0015035: protein disulfide oxidoreductase activity	3.00E-03
36	GO:0008460: dTDP-glucose 4,6-dehydratase activity	3.91E-03
37	GO:0008831: dTDP-4-dehydrorhamnose reductase activity	3.91E-03
38	GO:0000774: adenyl-nucleotide exchange factor activity	3.91E-03
39	GO:0016872: intramolecular lyase activity	3.91E-03
40	GO:0004825: methionine-tRNA ligase activity	3.91E-03
41	GO:0003746: translation elongation factor activity	4.31E-03
42	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	5.77E-03
43	GO:0070569: uridylyltransferase activity	5.77E-03
44	GO:0016209: antioxidant activity	5.77E-03
45	GO:0003913: DNA photolyase activity	5.77E-03
46	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	7.88E-03
47	GO:0016987: sigma factor activity	7.88E-03
48	GO:0051082: unfolded protein binding	8.80E-03
49	GO:0031072: heat shock protein binding	9.79E-03
50	GO:0008565: protein transporter activity	9.79E-03
51	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.28E-02
52	GO:0008312: 7S RNA binding	1.55E-02
53	GO:0043022: ribosome binding	1.55E-02
54	GO:0051087: chaperone binding	1.55E-02
55	GO:0008266: poly(U) RNA binding	1.85E-02
56	GO:0016887: ATPase activity	1.89E-02
57	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.16E-02
58	GO:0015095: magnesium ion transmembrane transporter activity	2.16E-02
59	GO:0046873: metal ion transmembrane transporter activity	2.16E-02
60	GO:0005525: GTP binding	2.59E-02
61	GO:0009055: electron carrier activity	2.72E-02
62	GO:0004527: exonuclease activity	3.98E-02
63	GO:0016831: carboxy-lyase activity	4.40E-02
64	GO:0005216: ion channel activity	4.40E-02
65	GO:0003777: microtubule motor activity	4.49E-02
66	GO:0003723: RNA binding	4.51E-02
67	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.89E-46
2	GO:0009570: chloroplast stroma	7.70E-36
3	GO:0009941: chloroplast envelope	4.98E-20
4	GO:0005840: ribosome	3.79E-12
5	GO:0009535: chloroplast thylakoid membrane	1.88E-09
6	GO:0030529: intracellular ribonucleoprotein complex	4.01E-07
7	GO:0009579: thylakoid	6.39E-07
8	GO:0009534: chloroplast thylakoid	1.78E-06
9	GO:0005622: intracellular	5.03E-04
10	GO:0005960: glycine cleavage complex	1.03E-03
11	GO:0080085: signal recognition particle, chloroplast targeting	1.03E-03
12	GO:0009528: plastid inner membrane	1.03E-03
13	GO:0000311: plastid large ribosomal subunit	1.03E-03
14	GO:0009527: plastid outer membrane	1.03E-03
15	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.03E-03
16	GO:0009532: plastid stroma	1.18E-03
17	GO:0009295: nucleoid	2.82E-03
18	GO:0015934: large ribosomal subunit	3.93E-03
19	GO:0009543: chloroplast thylakoid lumen	4.00E-03
20	GO:0009840: chloroplastic endopeptidase Clp complex	7.88E-03
21	GO:0031225: anchored component of membrane	1.02E-02
22	GO:0009706: chloroplast inner membrane	1.20E-02
23	GO:0048500: signal recognition particle	1.28E-02
24	GO:0005875: microtubule associated complex	2.15E-02
25	GO:0010319: stromule	2.31E-02
26	GO:0031977: thylakoid lumen	2.48E-02
27	GO:0042651: thylakoid membrane	3.59E-02
28	GO:0005871: kinesin complex	4.27E-02