co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G078569

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009234: menaquinone biosynthetic process	0.00E+00
2	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
3	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
4	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
5	GO:0032543: mitochondrial translation	0.00E+00
6	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
7	GO:1901259: chloroplast rRNA processing	0.00E+00
8	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
9	GO:0032544: plastid translation	0.00E+00
10	GO:0042372: phylloquinone biosynthetic process	0.00E+00
11	GO:0071486: cellular response to high light intensity	0.00E+00
12	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
13	GO:0043043: peptide biosynthetic process	0.00E+00
14	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
15	GO:0042407: cristae formation	0.00E+00
16	GO:0090391: granum assembly	0.00E+00
17	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.48E-18
18	GO:0010027: thylakoid membrane organization	1.34E-16
19	GO:0009658: chloroplast organization	2.58E-11
20	GO:0006412: translation	5.12E-11
21	GO:0010207: photosystem II assembly	6.00E-11
22	GO:0009902: chloroplast relocation	3.53E-10
23	GO:0006364: rRNA processing	4.82E-10
24	GO:0045036: protein targeting to chloroplast	6.67E-10
25	GO:0042793: transcription from plastid promoter	1.39E-09
26	GO:0015995: chlorophyll biosynthetic process	5.30E-08
27	GO:0006418: tRNA aminoacylation for protein translation	2.46E-07
28	GO:0006098: pentose-phosphate shunt	3.59E-07
29	GO:0016226: iron-sulfur cluster assembly	1.87E-06
30	GO:0006353: DNA-templated transcription, termination	7.11E-06
31	GO:0006779: porphyrin-containing compound biosynthetic process	2.83E-05
32	GO:0006655: phosphatidylglycerol biosynthetic process	5.89E-05
33	GO:0010236: plastoquinone biosynthetic process	6.14E-05
34	GO:0006399: tRNA metabolic process	1.24E-04
35	GO:0035304: regulation of protein dephosphorylation	2.75E-04
36	GO:0009773: photosynthetic electron transport in photosystem I	2.75E-04
37	GO:0045893: positive regulation of transcription, DNA-templated	3.36E-04
38	GO:0006354: DNA-templated transcription, elongation	3.68E-04
39	GO:0016556: mRNA modification	3.68E-04
40	GO:0045038: protein import into chloroplast thylakoid membrane	4.09E-04
41	GO:0019344: cysteine biosynthetic process	1.12E-03
42	GO:0030154: cell differentiation	1.40E-03
43	GO:0006434: seryl-tRNA aminoacylation	1.48E-03
44	GO:0006788: heme oxidation	1.48E-03
45	GO:0006573: valine metabolic process	1.48E-03
46	GO:0006433: prolyl-tRNA aminoacylation	1.48E-03
47	GO:0006423: cysteinyl-tRNA aminoacylation	1.48E-03
48	GO:0009069: serine family amino acid metabolic process	1.48E-03
49	GO:0071722: detoxification of arsenic-containing substance	1.48E-03
50	GO:0006430: lysyl-tRNA aminoacylation	1.48E-03
51	GO:0006429: leucyl-tRNA aminoacylation	1.48E-03
52	GO:0008361: regulation of cell size	1.48E-03
53	GO:0033014: tetrapyrrole biosynthetic process	1.50E-03
54	GO:0010103: stomatal complex morphogenesis	1.93E-03
55	GO:0048481: plant ovule development	1.96E-03
56	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.57E-03
57	GO:0009793: embryo development ending in seed dormancy	2.98E-03
58	GO:0010380: regulation of chlorophyll biosynthetic process	3.33E-03
59	GO:0019464: glycine decarboxylation via glycine cleavage system	3.33E-03
60	GO:0006432: phenylalanyl-tRNA aminoacylation	3.33E-03
61	GO:0010109: regulation of photosynthesis	3.33E-03
62	GO:0010024: phytochromobilin biosynthetic process	3.33E-03
63	GO:0048653: anther development	3.33E-03
64	GO:0010228: vegetative to reproductive phase transition of meristem	3.73E-03
65	GO:0006546: glycine catabolic process	4.87E-03
66	GO:0009735: response to cytokinin	5.26E-03
67	GO:0043067: regulation of programmed cell death	5.66E-03
68	GO:0034599: cellular response to oxidative stress	5.66E-03
69	GO:0009247: glycolipid biosynthetic process	5.66E-03
70	GO:0000304: response to singlet oxygen	5.66E-03
71	GO:0006450: regulation of translational fidelity	5.66E-03
72	GO:0006733: oxidoreduction coenzyme metabolic process	5.66E-03
73	GO:0009073: aromatic amino acid family biosynthetic process	5.84E-03
74	GO:0006184: obsolete GTP catabolic process	6.44E-03
75	GO:0016117: carotenoid biosynthetic process	6.46E-03
76	GO:0006636: unsaturated fatty acid biosynthetic process	7.98E-03
77	GO:0042742: defense response to bacterium	8.38E-03
78	GO:0006165: nucleoside diphosphate phosphorylation	8.39E-03
79	GO:0006228: UTP biosynthetic process	8.39E-03
80	GO:0010304: PSII associated light-harvesting complex II catabolic process	8.39E-03
81	GO:0009117: nucleotide metabolic process	8.39E-03
82	GO:0045037: protein import into chloroplast stroma	8.39E-03
83	GO:0019375: galactolipid biosynthetic process	8.39E-03
84	GO:0006183: GTP biosynthetic process	8.39E-03
85	GO:0009098: leucine biosynthetic process	8.39E-03
86	GO:0006241: CTP biosynthetic process	8.39E-03
87	GO:0007389: pattern specification process	8.39E-03
88	GO:0030259: lipid glycosylation	8.39E-03
89	GO:0006782: protoporphyrinogen IX biosynthetic process	8.39E-03
90	GO:0042545: cell wall modification	9.21E-03
91	GO:0019684: photosynthesis, light reaction	1.05E-02
92	GO:0009772: photosynthetic electron transport in photosystem II	1.15E-02
93	GO:0019748: secondary metabolic process	1.15E-02
94	GO:0010189: vitamin E biosynthetic process	1.15E-02
95	GO:0000096: sulfur amino acid metabolic process	1.15E-02
96	GO:0009089: lysine biosynthetic process via diaminopimelate	1.15E-02
97	GO:0006414: translational elongation	1.29E-02
98	GO:0007005: mitochondrion organization	1.49E-02
99	GO:0009695: jasmonic acid biosynthetic process	1.68E-02
100	GO:0034660: ncRNA metabolic process	1.87E-02
101	GO:0006801: superoxide metabolic process	1.87E-02
102	GO:0009926: auxin polar transport	1.87E-02
103	GO:0009106: lipoate metabolic process	1.87E-02
104	GO:0006032: chitin catabolic process	1.87E-02
105	GO:0006766: vitamin metabolic process	1.87E-02
106	GO:0009411: response to UV	1.87E-02
107	GO:0009814: defense response, incompatible interaction	1.87E-02
108	GO:0009108: coenzyme biosynthetic process	1.87E-02
109	GO:0006200: obsolete ATP catabolic process	1.97E-02
110	GO:0009965: leaf morphogenesis	2.10E-02
111	GO:0009082: branched-chain amino acid biosynthetic process	2.27E-02
112	GO:0010099: regulation of photomorphogenesis	2.27E-02
113	GO:0043039: tRNA aminoacylation	2.27E-02
114	GO:0048868: pollen tube development	2.70E-02
115	GO:0009585: red, far-red light phototransduction	2.70E-02
116	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.70E-02
117	GO:0040007: growth	2.70E-02
118	GO:0010015: root morphogenesis	2.70E-02
119	GO:0045087: innate immune response	2.70E-02
120	GO:0006662: glycerol ether metabolic process	3.16E-02
121	GO:0010411: xyloglucan metabolic process	3.17E-02
122	GO:0009832: plant-type cell wall biogenesis	3.17E-02
123	GO:0009407: toxin catabolic process	3.17E-02
124	GO:0006073: cellular glucan metabolic process	3.65E-02
125	GO:0009697: salicylic acid biosynthetic process	3.65E-02
126	GO:0009790: embryo development	3.67E-02
127	GO:0010114: response to red light	3.95E-02
128	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	4.16E-02
129	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	4.16E-02
130	GO:0019722: calcium-mediated signaling	4.70E-02
131	GO:0042546: cell wall biogenesis	4.70E-02
132	GO:0016998: cell wall macromolecule catabolic process	4.70E-02
133	GO:0009612: response to mechanical stimulus	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
4	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
5	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
6	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
7	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
8	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
9	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
10	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
11	GO:0005048: signal sequence binding	0.00E+00
12	GO:0010285: L,L-diaminopimelate aminotransferase activity	0.00E+00
13	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
14	GO:0046408: chlorophyll synthetase activity	0.00E+00
15	GO:0003735: structural constituent of ribosome	5.46E-09
16	GO:0004812: aminoacyl-tRNA ligase activity	4.05E-07
17	GO:0004659: prenyltransferase activity	4.09E-04
18	GO:0016209: antioxidant activity	4.09E-04
19	GO:0019843: rRNA binding	5.56E-04
20	GO:0031177: phosphopantetheine binding	1.48E-03
21	GO:0008194: UDP-glycosyltransferase activity	1.48E-03
22	GO:0004817: cysteine-tRNA ligase activity	1.48E-03
23	GO:0004824: lysine-tRNA ligase activity	1.48E-03
24	GO:0034256: chlorophyll(ide) b reductase activity	1.48E-03
25	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.48E-03
26	GO:0004827: proline-tRNA ligase activity	1.48E-03
27	GO:0016851: magnesium chelatase activity	1.48E-03
28	GO:0004823: leucine-tRNA ligase activity	1.48E-03
29	GO:0003862: 3-isopropylmalate dehydrogenase activity	1.48E-03
30	GO:0004828: serine-tRNA ligase activity	1.48E-03
31	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.48E-03
32	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.48E-03
33	GO:0004831: tyrosine-tRNA ligase activity	1.48E-03
34	GO:0035250: UDP-galactosyltransferase activity	1.48E-03
35	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	1.48E-03
36	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.50E-03
37	GO:0008312: 7S RNA binding	2.00E-03
38	GO:0000049: tRNA binding	3.24E-03
39	GO:0004826: phenylalanine-tRNA ligase activity	3.33E-03
40	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.33E-03
41	GO:0004853: uroporphyrinogen decarboxylase activity	3.33E-03
42	GO:0004392: heme oxygenase (decyclizing) activity	3.33E-03
43	GO:0051920: peroxiredoxin activity	3.33E-03
44	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	3.33E-03
45	GO:0032549: ribonucleoside binding	5.66E-03
46	GO:0000774: adenyl-nucleotide exchange factor activity	5.66E-03
47	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	8.39E-03
48	GO:0070569: uridylyltransferase activity	8.39E-03
49	GO:0004765: shikimate kinase activity	8.39E-03
50	GO:0004550: nucleoside diphosphate kinase activity	8.39E-03
51	GO:0003913: DNA photolyase activity	8.39E-03
52	GO:0003746: translation elongation factor activity	8.57E-03
53	GO:0004252: serine-type endopeptidase activity	1.02E-02
54	GO:0016987: sigma factor activity	1.15E-02
55	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.15E-02
56	GO:0031072: heat shock protein binding	1.68E-02
57	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.72E-02
58	GO:0004568: chitinase activity	1.87E-02
59	GO:0051082: unfolded protein binding	1.98E-02
60	GO:0004784: superoxide dismutase activity	2.27E-02
61	GO:0043022: ribosome binding	2.27E-02
62	GO:0051087: chaperone binding	2.27E-02
63	GO:0042578: phosphoric ester hydrolase activity	2.70E-02
64	GO:0008266: poly(U) RNA binding	2.70E-02
65	GO:0015035: protein disulfide oxidoreductase activity	2.83E-02
66	GO:0003723: RNA binding	2.92E-02
67	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.65E-02
68	GO:0016887: ATPase activity	3.70E-02
69	GO:0003924: GTPase activity	4.68E-02
70	GO:0003993: acid phosphatase activity	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0080085: signal recognition particle, chloroplast targeting	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0009507: chloroplast	8.17E-49
4	GO:0009570: chloroplast stroma	1.09E-39
5	GO:0009941: chloroplast envelope	1.79E-27
6	GO:0005840: ribosome	1.67E-12
7	GO:0009579: thylakoid	2.99E-08
8	GO:0009535: chloroplast thylakoid membrane	9.12E-08
9	GO:0030529: intracellular ribonucleoprotein complex	2.05E-06
10	GO:0009534: chloroplast thylakoid	1.02E-05
11	GO:0009840: chloroplastic endopeptidase Clp complex	1.95E-05
12	GO:0009295: nucleoid	2.83E-05
13	GO:0000311: plastid large ribosomal subunit	1.48E-03
14	GO:0005960: glycine cleavage complex	1.48E-03
15	GO:0048500: signal recognition particle	1.50E-03
16	GO:0005622: intracellular	1.64E-03
17	GO:0009532: plastid stroma	2.00E-03
18	GO:0009706: chloroplast inner membrane	3.31E-03
19	GO:0015934: large ribosomal subunit	7.83E-03
20	GO:0048046: apoplast	1.21E-02
21	GO:0009536: plastid	3.10E-02
22	GO:0005875: microtubule associated complex	3.67E-02
23	GO:0010319: stromule	3.95E-02
24	GO:0015935: small ribosomal subunit	4.23E-02