co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G077632

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048564: photosystem I assembly	0.00E+00
2	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
3	GO:0043953: protein transport by the Tat complex	0.00E+00
4	GO:0046506: sulfolipid biosynthetic process	0.00E+00
5	GO:1901259: chloroplast rRNA processing	0.00E+00
6	GO:0090342: regulation of cell aging	0.00E+00
7	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
8	GO:0042780: tRNA 3'-end processing	0.00E+00
9	GO:1900865: chloroplast RNA modification	0.00E+00
10	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
11	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
12	GO:0043686: co-translational protein modification	0.00E+00
13	GO:0090391: granum assembly	0.00E+00
14	GO:0009658: chloroplast organization	1.81E-09
15	GO:0006399: tRNA metabolic process	1.49E-08
16	GO:0009306: protein secretion	2.29E-07
17	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	5.56E-07
18	GO:0006457: protein folding	7.17E-07
19	GO:0006364: rRNA processing	5.81E-06
20	GO:0045036: protein targeting to chloroplast	1.64E-05
21	GO:0006655: phosphatidylglycerol biosynthetic process	2.35E-05
22	GO:0010027: thylakoid membrane organization	2.39E-05
23	GO:0010103: stomatal complex morphogenesis	9.59E-05
24	GO:0045038: protein import into chloroplast thylakoid membrane	2.50E-04
25	GO:0006782: protoporphyrinogen IX biosynthetic process	2.50E-04
26	GO:0006779: porphyrin-containing compound biosynthetic process	2.55E-04
27	GO:0010468: regulation of gene expression	4.31E-04
28	GO:0000023: maltose metabolic process	9.53E-04
29	GO:0006788: heme oxidation	1.08E-03
30	GO:0018160: peptidyl-pyrromethane cofactor linkage	1.08E-03
31	GO:0032543: mitochondrial translation	1.08E-03
32	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	1.08E-03
33	GO:0006429: leucyl-tRNA aminoacylation	1.08E-03
34	GO:0006591: ornithine metabolic process	1.08E-03
35	GO:0009959: negative gravitropism	1.08E-03
36	GO:0019252: starch biosynthetic process	1.17E-03
37	GO:0015995: chlorophyll biosynthetic process	1.70E-03
38	GO:0009407: toxin catabolic process	2.06E-03
39	GO:0010380: regulation of chlorophyll biosynthetic process	2.43E-03
40	GO:1901671: positive regulation of superoxide dismutase activity	2.43E-03
41	GO:0019464: glycine decarboxylation via glycine cleavage system	2.43E-03
42	GO:0030308: negative regulation of cell growth	2.43E-03
43	GO:0019481: L-alanine catabolic process, by transamination	2.43E-03
44	GO:0010024: phytochromobilin biosynthetic process	2.43E-03
45	GO:0009642: response to light intensity	2.43E-03
46	GO:0005987: sucrose catabolic process	2.43E-03
47	GO:0010207: photosystem II assembly	2.92E-03
48	GO:0006546: glycine catabolic process	3.05E-03
49	GO:0009073: aromatic amino acid family biosynthetic process	3.22E-03
50	GO:0045893: positive regulation of transcription, DNA-templated	3.63E-03
51	GO:0010731: protein glutathionylation	4.12E-03
52	GO:0016075: rRNA catabolic process	4.12E-03
53	GO:0043067: regulation of programmed cell death	4.12E-03
54	GO:0009231: riboflavin biosynthetic process	4.12E-03
55	GO:0009247: glycolipid biosynthetic process	4.12E-03
56	GO:0019760: glucosinolate metabolic process	4.12E-03
57	GO:0000304: response to singlet oxygen	4.12E-03
58	GO:0006450: regulation of translational fidelity	4.12E-03
59	GO:0006733: oxidoreduction coenzyme metabolic process	4.12E-03
60	GO:0010038: response to metal ion	4.12E-03
61	GO:0051085: chaperone mediated protein folding requiring cofactor	4.12E-03
62	GO:0042793: transcription from plastid promoter	4.32E-03
63	GO:0051607: defense response to virus	4.32E-03
64	GO:0016226: iron-sulfur cluster assembly	4.75E-03
65	GO:0008299: isoprenoid biosynthetic process	5.02E-03
66	GO:0006165: nucleoside diphosphate phosphorylation	6.08E-03
67	GO:0006228: UTP biosynthetic process	6.08E-03
68	GO:0010304: PSII associated light-harvesting complex II catabolic process	6.08E-03
69	GO:0051205: protein insertion into membrane	6.08E-03
70	GO:0009117: nucleotide metabolic process	6.08E-03
71	GO:0045037: protein import into chloroplast stroma	6.08E-03
72	GO:0019375: galactolipid biosynthetic process	6.08E-03
73	GO:0006183: GTP biosynthetic process	6.08E-03
74	GO:0006241: CTP biosynthetic process	6.08E-03
75	GO:0000373: Group II intron splicing	6.08E-03
76	GO:0042026: protein refolding	6.08E-03
77	GO:0071704: organic substance metabolic process	6.08E-03
78	GO:0019684: photosynthesis, light reaction	6.63E-03
79	GO:0035196: production of miRNAs involved in gene silencing by miRNA	7.52E-03
80	GO:0010267: production of ta-siRNAs involved in RNA interference	7.52E-03
81	GO:0006098: pentose-phosphate shunt	7.60E-03
82	GO:0019748: secondary metabolic process	8.31E-03
83	GO:0009308: amine metabolic process	8.31E-03
84	GO:0009627: systemic acquired resistance	8.47E-03
85	GO:0000105: histidine biosynthetic process	1.08E-02
86	GO:0006749: glutathione metabolic process	1.08E-02
87	GO:0031347: regulation of defense response	1.08E-02
88	GO:0048229: gametophyte development	1.08E-02
89	GO:0034660: ncRNA metabolic process	1.35E-02
90	GO:0006801: superoxide metabolic process	1.35E-02
91	GO:0009106: lipoate metabolic process	1.35E-02
92	GO:0032880: regulation of protein localization	1.35E-02
93	GO:0006766: vitamin metabolic process	1.35E-02
94	GO:0009411: response to UV	1.35E-02
95	GO:0009814: defense response, incompatible interaction	1.35E-02
96	GO:0009108: coenzyme biosynthetic process	1.35E-02
97	GO:0010583: response to cyclopentenone	1.35E-02
98	GO:0033014: tetrapyrrole biosynthetic process	1.35E-02
99	GO:0006189: 'de novo' IMP biosynthetic process	1.35E-02
100	GO:0009902: chloroplast relocation	1.55E-02
101	GO:0051604: protein maturation	1.64E-02
102	GO:0006396: RNA processing	1.78E-02
103	GO:0009735: response to cytokinin	1.84E-02
104	GO:0009585: red, far-red light phototransduction	1.95E-02
105	GO:0006221: pyrimidine nucleotide biosynthetic process	1.95E-02
106	GO:0045087: innate immune response	1.95E-02
107	GO:0001666: response to hypoxia	1.95E-02
108	GO:0019344: cysteine biosynthetic process	2.15E-02
109	GO:0000302: response to reactive oxygen species	2.28E-02
110	GO:0008380: RNA splicing	2.63E-02
111	GO:0016556: mRNA modification	2.63E-02
112	GO:0009723: response to ethylene	3.46E-02
113	GO:0031408: oxylipin biosynthetic process	3.79E-02
114	GO:0015996: chlorophyll catabolic process	4.21E-02
115	GO:0005982: starch metabolic process	4.21E-02
116	GO:0006636: unsaturated fatty acid biosynthetic process	4.21E-02
117	GO:0009630: gravitropism	4.64E-02
118	GO:0042545: cell wall modification	4.64E-02
119	GO:0045454: cell redox homeostasis	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
2	GO:0042586: peptide deformylase activity	0.00E+00
3	GO:0051743: red chlorophyll catabolite reductase activity	0.00E+00
4	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
5	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
6	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
7	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
8	GO:0003919: FMN adenylyltransferase activity	0.00E+00
9	GO:0003879: ATP phosphoribosyltransferase activity	0.00E+00
10	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
11	GO:0004853: uroporphyrinogen decarboxylase activity	3.50E-05
12	GO:0000774: adenyl-nucleotide exchange factor activity	1.17E-04
13	GO:0008565: protein transporter activity	1.47E-04
14	GO:0051082: unfolded protein binding	5.24E-04
15	GO:0016817: hydrolase activity, acting on acid anhydrides	6.59E-04
16	GO:0004525: ribonuclease III activity	9.38E-04
17	GO:0004585: ornithine carbamoyltransferase activity	1.08E-03
18	GO:0008146: sulfotransferase activity	1.08E-03
19	GO:0033862: UMP kinase activity	1.08E-03
20	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.08E-03
21	GO:0004418: hydroxymethylbilane synthase activity	1.08E-03
22	GO:0004823: leucine-tRNA ligase activity	1.08E-03
23	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.08E-03
24	GO:0004362: glutathione-disulfide reductase activity	1.08E-03
25	GO:0051087: chaperone binding	1.27E-03
26	GO:0047134: protein-disulfide reductase activity	2.43E-03
27	GO:0004462: lactoylglutathione lyase activity	2.43E-03
28	GO:0004392: heme oxygenase (decyclizing) activity	2.43E-03
29	GO:0005496: steroid binding	2.43E-03
30	GO:0016630: protochlorophyllide reductase activity	2.43E-03
31	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	2.43E-03
32	GO:0016743: carboxyl- or carbamoyltransferase activity	4.12E-03
33	GO:0003959: NADPH dehydrogenase activity	4.12E-03
34	GO:0009041: uridylate kinase activity	4.12E-03
35	GO:0004252: serine-type endopeptidase activity	5.04E-03
36	GO:0005507: copper ion binding	5.25E-03
37	GO:0016831: carboxy-lyase activity	5.79E-03
38	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	6.08E-03
39	GO:0070569: uridylyltransferase activity	6.08E-03
40	GO:0004765: shikimate kinase activity	6.08E-03
41	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	6.08E-03
42	GO:0004550: nucleoside diphosphate kinase activity	6.08E-03
43	GO:0003913: DNA photolyase activity	6.08E-03
44	GO:0016868: intramolecular transferase activity, phosphotransferases	8.31E-03
45	GO:0008173: RNA methyltransferase activity	1.08E-02
46	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.35E-02
47	GO:0004784: superoxide dismutase activity	1.64E-02
48	GO:0043022: ribosome binding	1.64E-02
49	GO:0004575: sucrose alpha-glucosidase activity	1.64E-02
50	GO:0008266: poly(U) RNA binding	1.95E-02
51	GO:0008236: serine-type peptidase activity	2.15E-02
52	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.28E-02
53	GO:0046914: transition metal ion binding	2.63E-02
54	GO:0048038: quinone binding	4.21E-02
55	GO:0005216: ion channel activity	4.64E-02

Rank	GO Term	Adjusted P value
1	GO:0042646: plastid nucleoid	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	2.87E-25
4	GO:0009941: chloroplast envelope	9.94E-14
5	GO:0009570: chloroplast stroma	9.29E-12
6	GO:0009579: thylakoid	1.37E-08
7	GO:0009535: chloroplast thylakoid membrane	2.53E-08
8	GO:0009532: plastid stroma	1.27E-06
9	GO:0009840: chloroplastic endopeptidase Clp complex	4.31E-04
10	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.08E-03
11	GO:0009526: plastid envelope	1.08E-03
12	GO:0005960: glycine cleavage complex	1.08E-03
13	GO:0044445: cytosolic part	1.08E-03
14	GO:0009534: chloroplast thylakoid	1.70E-03
15	GO:0005759: mitochondrial matrix	2.33E-03
16	GO:0009295: nucleoid	3.05E-03
17	GO:0009536: plastid	4.26E-03
18	GO:0010319: stromule	4.34E-03
19	GO:0031977: thylakoid lumen	4.75E-03
20	GO:0019013: viral nucleocapsid	9.49E-03
21	GO:0019898: extrinsic component of membrane	1.08E-02
22	GO:0009654: photosystem II oxygen evolving complex	1.35E-02
23	GO:0005739: mitochondrion	2.91E-02
24	GO:0009543: chloroplast thylakoid lumen	3.79E-02