co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G077214

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042372: phylloquinone biosynthetic process	0.00E+00
2	GO:0071486: cellular response to high light intensity	0.00E+00
3	GO:0051188: cofactor biosynthetic process	0.00E+00
4	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
5	GO:0043043: peptide biosynthetic process	0.00E+00
6	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
7	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
8	GO:0042407: cristae formation	0.00E+00
9	GO:0042821: pyridoxal biosynthetic process	0.00E+00
10	GO:0090391: granum assembly	0.00E+00
11	GO:0009234: menaquinone biosynthetic process	0.00E+00
12	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
13	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
14	GO:0032543: mitochondrial translation	0.00E+00
15	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
16	GO:1901259: chloroplast rRNA processing	0.00E+00
17	GO:0032544: plastid translation	0.00E+00
18	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
19	GO:0010027: thylakoid membrane organization	5.82E-20
20	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.04E-18
21	GO:0009658: chloroplast organization	3.99E-12
22	GO:0010207: photosystem II assembly	1.37E-11
23	GO:0015995: chlorophyll biosynthetic process	2.71E-11
24	GO:0009902: chloroplast relocation	3.51E-11
25	GO:0006412: translation	1.95E-10
26	GO:0006364: rRNA processing	2.14E-10
27	GO:0042793: transcription from plastid promoter	3.42E-09
28	GO:0006098: pentose-phosphate shunt	9.65E-09
29	GO:0016226: iron-sulfur cluster assembly	1.57E-08
30	GO:0006418: tRNA aminoacylation for protein translation	4.00E-08
31	GO:0045036: protein targeting to chloroplast	8.07E-08
32	GO:0006655: phosphatidylglycerol biosynthetic process	1.46E-07
33	GO:0006733: oxidoreduction coenzyme metabolic process	2.43E-06
34	GO:0009117: nucleotide metabolic process	1.09E-05
35	GO:0019748: secondary metabolic process	2.96E-05
36	GO:0035304: regulation of protein dephosphorylation	3.82E-05
37	GO:0006546: glycine catabolic process	4.68E-05
38	GO:0006779: porphyrin-containing compound biosynthetic process	4.68E-05
39	GO:0010236: plastoquinone biosynthetic process	8.28E-05
40	GO:0045893: positive regulation of transcription, DNA-templated	1.04E-04
41	GO:0009106: lipoate metabolic process	1.12E-04
42	GO:0006766: vitamin metabolic process	1.12E-04
43	GO:0009108: coenzyme biosynthetic process	1.12E-04
44	GO:0006399: tRNA metabolic process	1.81E-04
45	GO:0009073: aromatic amino acid family biosynthetic process	2.18E-04
46	GO:0030154: cell differentiation	2.20E-04
47	GO:0019684: photosynthesis, light reaction	2.20E-04
48	GO:0019344: cysteine biosynthetic process	2.58E-04
49	GO:0010103: stomatal complex morphogenesis	3.46E-04
50	GO:0009773: photosynthetic electron transport in photosystem I	4.22E-04
51	GO:0009695: jasmonic acid biosynthetic process	5.09E-04
52	GO:0006354: DNA-templated transcription, elongation	5.21E-04
53	GO:0016556: mRNA modification	5.21E-04
54	GO:0048481: plant ovule development	5.31E-04
55	GO:0006353: DNA-templated transcription, termination	5.34E-04
56	GO:0000096: sulfur amino acid metabolic process	9.02E-04
57	GO:0009735: response to cytokinin	1.30E-03
58	GO:0006636: unsaturated fatty acid biosynthetic process	1.35E-03
59	GO:0016117: carotenoid biosynthetic process	1.67E-03
60	GO:0009793: embryo development ending in seed dormancy	1.71E-03
61	GO:0008361: regulation of cell size	1.76E-03
62	GO:0006434: seryl-tRNA aminoacylation	1.76E-03
63	GO:0018160: peptidyl-pyrromethane cofactor linkage	1.76E-03
64	GO:0006573: valine metabolic process	1.76E-03
65	GO:0006433: prolyl-tRNA aminoacylation	1.76E-03
66	GO:0006423: cysteinyl-tRNA aminoacylation	1.76E-03
67	GO:0009768: photosynthesis, light harvesting in photosystem I	1.76E-03
68	GO:0009069: serine family amino acid metabolic process	1.76E-03
69	GO:0071722: detoxification of arsenic-containing substance	1.76E-03
70	GO:0019676: ammonia assimilation cycle	1.76E-03
71	GO:0006430: lysyl-tRNA aminoacylation	1.76E-03
72	GO:0009443: pyridoxal 5'-phosphate salvage	1.76E-03
73	GO:0006723: cuticle hydrocarbon biosynthetic process	1.76E-03
74	GO:0006429: leucyl-tRNA aminoacylation	1.76E-03
75	GO:0010025: wax biosynthetic process	1.92E-03
76	GO:0034660: ncRNA metabolic process	1.92E-03
77	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.31E-03
78	GO:0006414: translational elongation	3.87E-03
79	GO:0010192: mucilage biosynthetic process	3.99E-03
80	GO:0048653: anther development	3.99E-03
81	GO:0010380: regulation of chlorophyll biosynthetic process	3.99E-03
82	GO:0009225: nucleotide-sugar metabolic process	3.99E-03
83	GO:0044272: sulfur compound biosynthetic process	3.99E-03
84	GO:0019464: glycine decarboxylation via glycine cleavage system	3.99E-03
85	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.99E-03
86	GO:0006432: phenylalanyl-tRNA aminoacylation	3.99E-03
87	GO:0051555: flavonol biosynthetic process	3.99E-03
88	GO:0010253: UDP-rhamnose biosynthetic process	3.99E-03
89	GO:0010109: regulation of photosynthesis	3.99E-03
90	GO:0010228: vegetative to reproductive phase transition of meristem	5.51E-03
91	GO:0006450: regulation of translational fidelity	6.77E-03
92	GO:0045226: extracellular polysaccharide biosynthetic process	6.77E-03
93	GO:0006431: methionyl-tRNA aminoacylation	6.77E-03
94	GO:0043067: regulation of programmed cell death	6.77E-03
95	GO:0048235: pollen sperm cell differentiation	6.77E-03
96	GO:0030497: fatty acid elongation	6.77E-03
97	GO:0034599: cellular response to oxidative stress	6.77E-03
98	GO:0009247: glycolipid biosynthetic process	6.77E-03
99	GO:0000304: response to singlet oxygen	6.77E-03
100	GO:0010143: cutin biosynthetic process	6.77E-03
101	GO:0009965: leaf morphogenesis	7.04E-03
102	GO:0031408: oxylipin biosynthetic process	8.84E-03
103	GO:0051607: defense response to virus	8.84E-03
104	GO:0007389: pattern specification process	1.00E-02
105	GO:0030259: lipid glycosylation	1.00E-02
106	GO:0006782: protoporphyrinogen IX biosynthetic process	1.00E-02
107	GO:0009833: plant-type primary cell wall biogenesis	1.00E-02
108	GO:0019216: regulation of lipid metabolic process	1.00E-02
109	GO:0010417: glucuronoxylan biosynthetic process	1.00E-02
110	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.00E-02
111	GO:0045037: protein import into chloroplast stroma	1.00E-02
112	GO:0019375: galactolipid biosynthetic process	1.00E-02
113	GO:0045038: protein import into chloroplast thylakoid membrane	1.00E-02
114	GO:0010214: seed coat development	1.00E-02
115	GO:0006184: obsolete GTP catabolic process	1.01E-02
116	GO:0042545: cell wall modification	1.19E-02
117	GO:0010189: vitamin E biosynthetic process	1.37E-02
118	GO:0009308: amine metabolic process	1.37E-02
119	GO:0001676: long-chain fatty acid metabolic process	1.37E-02
120	GO:0006569: tryptophan catabolic process	1.37E-02
121	GO:0010072: primary shoot apical meristem specification	1.37E-02
122	GO:0009089: lysine biosynthetic process via diaminopimelate	1.37E-02
123	GO:0010315: auxin efflux	1.37E-02
124	GO:0009088: threonine biosynthetic process	1.37E-02
125	GO:0009772: photosynthetic electron transport in photosystem II	1.37E-02
126	GO:0007568: aging	1.37E-02
127	GO:0000023: maltose metabolic process	1.40E-02
128	GO:0010155: regulation of proton transport	1.54E-02
129	GO:0007005: mitochondrion organization	1.78E-02
130	GO:0006542: glutamine biosynthetic process	1.78E-02
131	GO:0009913: epidermal cell differentiation	1.78E-02
132	GO:0048367: shoot system development	2.17E-02
133	GO:0006801: superoxide metabolic process	2.23E-02
134	GO:0009926: auxin polar transport	2.23E-02
135	GO:0010205: photoinhibition	2.23E-02
136	GO:0042335: cuticle development	2.23E-02
137	GO:0009814: defense response, incompatible interaction	2.23E-02
138	GO:0033014: tetrapyrrole biosynthetic process	2.23E-02
139	GO:0015979: photosynthesis	2.61E-02
140	GO:0006633: fatty acid biosynthetic process	2.61E-02
141	GO:0043085: positive regulation of catalytic activity	2.71E-02
142	GO:0006200: obsolete ATP catabolic process	2.71E-02
143	GO:0010099: regulation of photomorphogenesis	2.72E-02
144	GO:0043039: tRNA aminoacylation	2.72E-02
145	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.24E-02
146	GO:0040007: growth	3.24E-02
147	GO:0010015: root morphogenesis	3.24E-02
148	GO:0045087: innate immune response	3.24E-02
149	GO:0048868: pollen tube development	3.24E-02
150	GO:0009072: aromatic amino acid family metabolic process	3.24E-02
151	GO:0010154: fruit development	3.24E-02
152	GO:0042742: defense response to bacterium	3.74E-02
153	GO:0009407: toxin catabolic process	3.79E-02
154	GO:0010051: xylem and phloem pattern formation	3.79E-02
155	GO:0009832: plant-type cell wall biogenesis	3.79E-02
156	GO:0010466: negative regulation of peptidase activity	3.79E-02
157	GO:0009684: indoleacetic acid biosynthetic process	3.79E-02
158	GO:0006662: glycerol ether metabolic process	4.07E-02
159	GO:0009697: salicylic acid biosynthetic process	4.38E-02
160	GO:0009790: embryo development	4.72E-02
161	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	4.99E-02
162	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	4.99E-02
163	GO:0009765: photosynthesis, light harvesting	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
2	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0010285: L,L-diaminopimelate aminotransferase activity	0.00E+00
5	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
6	GO:0045550: geranylgeranyl reductase activity	0.00E+00
7	GO:0046408: chlorophyll synthetase activity	0.00E+00
8	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
9	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
10	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
11	GO:0042285: xylosyltransferase activity	0.00E+00
12	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
13	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
14	GO:0031409: pigment binding	0.00E+00
15	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
16	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	0.00E+00
17	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
18	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
19	GO:0003735: structural constituent of ribosome	1.41E-08
20	GO:0004812: aminoacyl-tRNA ligase activity	7.07E-08
21	GO:0004659: prenyltransferase activity	5.34E-04
22	GO:0004765: shikimate kinase activity	5.34E-04
23	GO:0016209: antioxidant activity	5.34E-04
24	GO:0019843: rRNA binding	8.42E-04
25	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.76E-03
26	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.76E-03
27	GO:0004831: tyrosine-tRNA ligase activity	1.76E-03
28	GO:0035250: UDP-galactosyltransferase activity	1.76E-03
29	GO:0010280: UDP-L-rhamnose synthase activity	1.76E-03
30	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	1.76E-03
31	GO:0031177: phosphopantetheine binding	1.76E-03
32	GO:0004467: long-chain fatty acid-CoA ligase activity	1.76E-03
33	GO:0070402: NADPH binding	1.76E-03
34	GO:0008194: UDP-glycosyltransferase activity	1.76E-03
35	GO:0004817: cysteine-tRNA ligase activity	1.76E-03
36	GO:0004795: threonine synthase activity	1.76E-03
37	GO:0050377: UDP-glucose 4,6-dehydratase activity	1.76E-03
38	GO:0004824: lysine-tRNA ligase activity	1.76E-03
39	GO:0034256: chlorophyll(ide) b reductase activity	1.76E-03
40	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.76E-03
41	GO:0004827: proline-tRNA ligase activity	1.76E-03
42	GO:0003989: acetyl-CoA carboxylase activity	1.76E-03
43	GO:0004418: hydroxymethylbilane synthase activity	1.76E-03
44	GO:0004828: serine-tRNA ligase activity	1.76E-03
45	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.76E-03
46	GO:0016851: magnesium chelatase activity	1.76E-03
47	GO:0004823: leucine-tRNA ligase activity	1.76E-03
48	GO:0031957: very long-chain fatty acid-CoA ligase activity	1.76E-03
49	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.92E-03
50	GO:0003746: translation elongation factor activity	2.33E-03
51	GO:0008312: 7S RNA binding	2.55E-03
52	GO:0051920: peroxiredoxin activity	3.99E-03
53	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	3.99E-03
54	GO:0004826: phenylalanine-tRNA ligase activity	3.99E-03
55	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.99E-03
56	GO:0004853: uroporphyrinogen decarboxylase activity	3.99E-03
57	GO:0004075: biotin carboxylase activity	3.99E-03
58	GO:0045485: omega-6 fatty acid desaturase activity	3.99E-03
59	GO:0000049: tRNA binding	4.20E-03
60	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	5.51E-03
61	GO:0004825: methionine-tRNA ligase activity	6.77E-03
62	GO:0032549: ribonucleoside binding	6.77E-03
63	GO:0008460: dTDP-glucose 4,6-dehydratase activity	6.77E-03
64	GO:0008831: dTDP-4-dehydrorhamnose reductase activity	6.77E-03
65	GO:0000774: adenyl-nucleotide exchange factor activity	6.77E-03
66	GO:0003913: DNA photolyase activity	1.00E-02
67	GO:0071949: FAD binding	1.00E-02
68	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	1.00E-02
69	GO:0070569: uridylyltransferase activity	1.00E-02
70	GO:0015018: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	1.00E-02
71	GO:0016760: cellulose synthase (UDP-forming) activity	1.03E-02
72	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.37E-02
73	GO:0016987: sigma factor activity	1.37E-02
74	GO:0004252: serine-type endopeptidase activity	1.50E-02
75	GO:0004356: glutamate-ammonia ligase activity	1.78E-02
76	GO:0008173: RNA methyltransferase activity	1.78E-02
77	GO:0005525: GTP binding	2.11E-02
78	GO:0031072: heat shock protein binding	2.17E-02
79	GO:0016758: transferase activity, transferring hexosyl groups	2.22E-02
80	GO:0003723: RNA binding	2.54E-02
81	GO:0004784: superoxide dismutase activity	2.72E-02
82	GO:0043022: ribosome binding	2.72E-02
83	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.72E-02
84	GO:0051087: chaperone binding	2.72E-02
85	GO:0003924: GTPase activity	2.77E-02
86	GO:0042578: phosphoric ester hydrolase activity	3.24E-02
87	GO:0008266: poly(U) RNA binding	3.24E-02
88	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.79E-02
89	GO:0030414: peptidase inhibitor activity	3.79E-02
90	GO:0015035: protein disulfide oxidoreductase activity	3.89E-02
91	GO:0043531: ADP binding	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0009782: photosystem I antenna complex	0.00E+00
3	GO:0009507: chloroplast	1.51E-49
4	GO:0009570: chloroplast stroma	5.42E-39
5	GO:0009941: chloroplast envelope	3.38E-25
6	GO:0005840: ribosome	7.73E-12
7	GO:0009535: chloroplast thylakoid membrane	4.79E-11
8	GO:0009579: thylakoid	2.10E-08
9	GO:0030529: intracellular ribonucleoprotein complex	9.57E-06
10	GO:0009534: chloroplast thylakoid	2.27E-05
11	GO:0009840: chloroplastic endopeptidase Clp complex	2.96E-05
12	GO:0009295: nucleoid	4.68E-05
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.37E-03
14	GO:0005622: intracellular	1.54E-03
15	GO:0005960: glycine cleavage complex	1.76E-03
16	GO:0080085: signal recognition particle, chloroplast targeting	1.76E-03
17	GO:0000311: plastid large ribosomal subunit	1.76E-03
18	GO:0048500: signal recognition particle	1.92E-03
19	GO:0009532: plastid stroma	2.55E-03
20	GO:0009706: chloroplast inner membrane	4.61E-03
21	GO:0055028: cortical microtubule	6.77E-03
22	GO:0009536: plastid	7.57E-03
23	GO:0009543: chloroplast thylakoid lumen	8.84E-03
24	GO:0015934: large ribosomal subunit	1.08E-02
25	GO:0005875: microtubule associated complex	4.72E-02