co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G074282

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042550: photosystem I stabilization	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
4	GO:0042221: response to chemical	0.00E+00
5	GO:0030243: cellulose metabolic process	0.00E+00
6	GO:0030388: fructose 1,6-bisphosphate metabolic process	0.00E+00
7	GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene	0.00E+00
8	GO:0055070: copper ion homeostasis	0.00E+00
9	GO:0009773: photosynthetic electron transport in photosystem I	1.44E-10
10	GO:0019252: starch biosynthetic process	2.14E-10
11	GO:0043085: positive regulation of catalytic activity	9.31E-10
12	GO:0010207: photosystem II assembly	1.93E-09
13	GO:0010027: thylakoid membrane organization	6.88E-09
14	GO:0000023: maltose metabolic process	7.41E-09
15	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.69E-06
16	GO:0016117: carotenoid biosynthetic process	5.42E-06
17	GO:0015979: photosynthesis	1.39E-05
18	GO:0009772: photosynthetic electron transport in photosystem II	2.80E-05
19	GO:0070838: divalent metal ion transport	2.80E-05
20	GO:0046777: protein autophosphorylation	3.96E-05
21	GO:0006364: rRNA processing	4.21E-05
22	GO:0030003: cellular cation homeostasis	6.98E-05
23	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.61E-04
24	GO:0016120: carotene biosynthetic process	1.99E-04
25	GO:0019676: ammonia assimilation cycle	1.99E-04
26	GO:0006814: sodium ion transport	2.20E-04
27	GO:0016556: mRNA modification	2.20E-04
28	GO:0006875: cellular metal ion homeostasis	4.79E-04
29	GO:0009657: plastid organization	6.11E-04
30	GO:0009966: regulation of signal transduction	6.95E-04
31	GO:0010155: regulation of proton transport	6.95E-04
32	GO:0010103: stomatal complex morphogenesis	7.87E-04
33	GO:0051289: protein homotetramerization	8.20E-04
34	GO:0019760: glucosinolate metabolic process	8.20E-04
35	GO:0015986: ATP synthesis coupled proton transport	9.88E-04
36	GO:0051260: protein homooligomerization	1.21E-03
37	GO:0009595: detection of biotic stimulus	1.21E-03
38	GO:0045037: protein import into chloroplast stroma	1.21E-03
39	GO:0015976: carbon utilization	1.21E-03
40	GO:0006014: D-ribose metabolic process	1.21E-03
41	GO:0010196: nonphotochemical quenching	1.21E-03
42	GO:0050821: protein stabilization	1.21E-03
43	GO:0016485: protein processing	1.21E-03
44	GO:0009902: chloroplast relocation	1.45E-03
45	GO:0006098: pentose-phosphate shunt	1.48E-03
46	GO:0030163: protein catabolic process	1.58E-03
47	GO:0043900: regulation of multi-organism process	1.64E-03
48	GO:0034755: iron ion transmembrane transport	1.64E-03
49	GO:0006796: phosphate-containing compound metabolic process	1.64E-03
50	GO:0006662: glycerol ether metabolic process	1.86E-03
51	GO:0046688: response to copper ion	2.09E-03
52	GO:0017148: negative regulation of translation	2.09E-03
53	GO:0019761: glucosinolate biosynthetic process	2.15E-03
54	GO:0045454: cell redox homeostasis	2.40E-03
55	GO:0010206: photosystem II repair	2.58E-03
56	GO:0034660: ncRNA metabolic process	2.58E-03
57	GO:0010205: photoinhibition	2.58E-03
58	GO:0009411: response to UV	2.58E-03
59	GO:0005985: sucrose metabolic process	3.11E-03
60	GO:0046939: nucleotide phosphorylation	3.11E-03
61	GO:0010310: regulation of hydrogen peroxide metabolic process	3.11E-03
62	GO:0015995: chlorophyll biosynthetic process	4.03E-03
63	GO:0009624: response to nematode	4.03E-03
64	GO:0009832: plant-type cell wall biogenesis	4.33E-03
65	GO:0005983: starch catabolic process	4.33E-03
66	GO:0006354: DNA-templated transcription, elongation	4.97E-03
67	GO:0009697: salicylic acid biosynthetic process	4.97E-03
68	GO:0006754: ATP biosynthetic process	4.97E-03
69	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	5.64E-03
70	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	5.64E-03
71	GO:0042793: transcription from plastid promoter	7.08E-03
72	GO:0006108: malate metabolic process	7.08E-03
73	GO:0016049: cell growth	8.65E-03
74	GO:0006833: water transport	8.65E-03
75	GO:0009750: response to fructose	8.65E-03
76	GO:0015992: proton transport	9.48E-03
77	GO:0016126: sterol biosynthetic process	9.48E-03
78	GO:0009664: plant-type cell wall organization	1.03E-02
79	GO:0042742: defense response to bacterium	1.11E-02
80	GO:0010200: response to chitin	1.12E-02
81	GO:0010193: response to ozone	1.12E-02
82	GO:0006612: protein targeting to membrane	1.12E-02
83	GO:0010363: regulation of plant-type hypersensitive response	1.21E-02
84	GO:0035304: regulation of protein dephosphorylation	1.21E-02
85	GO:0006139: nucleobase-containing compound metabolic process	1.21E-02
86	GO:0031348: negative regulation of defense response	1.30E-02
87	GO:0009867: jasmonic acid mediated signaling pathway	1.30E-02
88	GO:0009817: defense response to fungus, incompatible interaction	1.30E-02
89	GO:0000165: MAPK cascade	1.70E-02
90	GO:0000413: protein peptidyl-prolyl isomerization	1.70E-02
91	GO:0006508: proteolysis	1.82E-02
92	GO:0009735: response to cytokinin	1.91E-02
93	GO:0009409: response to cold	2.02E-02
94	GO:0019344: cysteine biosynthetic process	2.14E-02
95	GO:0009637: response to blue light	2.14E-02
96	GO:0006811: ion transport	2.25E-02
97	GO:0010114: response to red light	2.37E-02
98	GO:0010218: response to far red light	2.61E-02
99	GO:0009658: chloroplast organization	2.85E-02
100	GO:0006812: cation transport	3.51E-02
101	GO:0009644: response to high light intensity	3.65E-02
102	GO:0055114: oxidation-reduction process	4.23E-02

Rank	GO Term	Adjusted P value
1	GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity	0.00E+00
2	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
3	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
4	GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity	0.00E+00
5	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
6	GO:0019200: carbohydrate kinase activity	0.00E+00
7	GO:0051738: xanthophyll binding	0.00E+00
8	GO:0015131: oxaloacetate transmembrane transporter activity	0.00E+00
9	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
10	GO:0016719: carotene 7,8-desaturase activity	0.00E+00
11	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
12	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.76E-06
13	GO:0004222: metalloendopeptidase activity	6.53E-05
14	GO:0015140: malate transmembrane transporter activity	1.99E-04
15	GO:0004618: phosphoglycerate kinase activity	1.99E-04
16	GO:0015088: copper uptake transmembrane transporter activity	1.99E-04
17	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.72E-04
18	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.79E-04
19	GO:0016168: chlorophyll binding	6.95E-04
20	GO:0015035: protein disulfide oxidoreductase activity	7.43E-04
21	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	8.20E-04
22	GO:0004747: ribokinase activity	1.21E-03
23	GO:0009055: electron carrier activity	1.26E-03
24	GO:0005381: iron ion transmembrane transporter activity	1.64E-03
25	GO:0004470: malic enzyme activity	1.64E-03
26	GO:0004017: adenylate kinase activity	1.64E-03
27	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	2.58E-03
28	GO:0004089: carbonate dehydratase activity	2.58E-03
29	GO:0019201: nucleotide kinase activity	2.58E-03
30	GO:0019205: nucleobase-containing compound kinase activity	2.58E-03
31	GO:0008047: enzyme activator activity	3.11E-03
32	GO:0016776: phosphotransferase activity, phosphate group as acceptor	3.71E-03
33	GO:0004427: inorganic diphosphatase activity	3.71E-03
34	GO:0042578: phosphoric ester hydrolase activity	3.71E-03
35	GO:0042803: protein homodimerization activity	4.73E-03
36	GO:0003690: double-stranded DNA binding	5.64E-03
37	GO:0046961: proton-transporting ATPase activity, rotational mechanism	7.85E-03
38	GO:0004713: protein tyrosine kinase activity	8.65E-03
39	GO:0008080: N-acetyltransferase activity	9.48E-03
40	GO:0005215: transporter activity	1.02E-02
41	GO:0015297: antiporter activity	1.21E-02
42	GO:0016597: amino acid binding	1.60E-02
43	GO:0051539: 4 iron, 4 sulfur cluster binding	1.81E-02
44	GO:0008483: transaminase activity	1.81E-02
45	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.91E-02
46	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.25E-02
47	GO:0005198: structural molecule activity	2.49E-02
48	GO:0017111: nucleoside-triphosphatase activity	2.66E-02
49	GO:0050897: cobalt ion binding	4.22E-02

Rank	GO Term	Adjusted P value
1	GO:0009512: cytochrome b6f complex	0.00E+00
2	GO:0009507: chloroplast	3.91E-25
3	GO:0009941: chloroplast envelope	6.48E-14
4	GO:0009535: chloroplast thylakoid membrane	1.75E-13
5	GO:0009579: thylakoid	1.12E-12
6	GO:0031977: thylakoid lumen	4.79E-09
7	GO:0009534: chloroplast thylakoid	2.37E-08
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.20E-07
9	GO:0009543: chloroplast thylakoid lumen	1.04E-05
10	GO:0009570: chloroplast stroma	3.11E-05
11	GO:0009706: chloroplast inner membrane	6.53E-05
12	GO:0010319: stromule	1.80E-04
13	GO:0030093: chloroplast photosystem I	1.99E-04
14	GO:0009517: PSII associated light-harvesting complex II	1.99E-04
15	GO:0009509: chromoplast	1.99E-04
16	GO:0016020: membrane	6.23E-04
17	GO:0019898: extrinsic component of membrane	2.09E-03
18	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.58E-03
19	GO:0009654: photosystem II oxygen evolving complex	2.58E-03
20	GO:0010287: plastoglobule	4.03E-03
21	GO:0048046: apoplast	5.61E-03
22	GO:0009522: photosystem I	1.21E-02
23	GO:0009523: photosystem II	1.91E-02