co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G070605

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015714: phosphoenolpyruvate transport	0.00E+00
2	GO:0030243: cellulose metabolic process	0.00E+00
3	GO:0030388: fructose 1,6-bisphosphate metabolic process	0.00E+00
4	GO:0055070: copper ion homeostasis	0.00E+00
5	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
6	GO:0042550: photosystem I stabilization	0.00E+00
7	GO:2000505: regulation of energy homeostasis	0.00E+00
8	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
9	GO:0042221: response to chemical	0.00E+00
10	GO:0010028: xanthophyll cycle	0.00E+00
11	GO:0035436: triose phosphate transmembrane transport	0.00E+00
12	GO:0015979: photosynthesis	4.67E-20
13	GO:0009773: photosynthetic electron transport in photosystem I	7.13E-13
14	GO:0010207: photosystem II assembly	9.79E-11
15	GO:0043085: positive regulation of catalytic activity	1.34E-09
16	GO:0006098: pentose-phosphate shunt	1.66E-09
17	GO:0006364: rRNA processing	2.05E-08
18	GO:0015995: chlorophyll biosynthetic process	2.21E-08
19	GO:0016117: carotenoid biosynthetic process	6.18E-08
20	GO:0010027: thylakoid membrane organization	2.79E-07
21	GO:0070838: divalent metal ion transport	8.84E-07
22	GO:0009772: photosynthetic electron transport in photosystem II	8.84E-07
23	GO:0009637: response to blue light	2.00E-06
24	GO:0010114: response to red light	2.95E-06
25	GO:0009108: coenzyme biosynthetic process	3.84E-06
26	GO:0009106: lipoate metabolic process	3.84E-06
27	GO:0030003: cellular cation homeostasis	3.84E-06
28	GO:0006766: vitamin metabolic process	3.84E-06
29	GO:0010218: response to far red light	4.25E-06
30	GO:0000023: maltose metabolic process	5.03E-06
31	GO:0019252: starch biosynthetic process	5.69E-06
32	GO:0010103: stomatal complex morphogenesis	6.39E-06
33	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.50E-06
34	GO:0009072: aromatic amino acid family metabolic process	1.07E-05
35	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.09E-05
36	GO:0006814: sodium ion transport	2.33E-05
37	GO:0009902: chloroplast relocation	2.35E-05
38	GO:0006546: glycine catabolic process	3.24E-05
39	GO:0010196: nonphotochemical quenching	5.33E-05
40	GO:0019216: regulation of lipid metabolic process	5.33E-05
41	GO:0009595: detection of biotic stimulus	5.33E-05
42	GO:0006636: unsaturated fatty acid biosynthetic process	7.33E-05
43	GO:0000096: sulfur amino acid metabolic process	9.71E-05
44	GO:0043900: regulation of multi-organism process	9.71E-05
45	GO:0019748: secondary metabolic process	9.71E-05
46	GO:0009657: plastid organization	1.13E-04
47	GO:0015986: ATP synthesis coupled proton transport	2.30E-04
48	GO:0009695: jasmonic acid biosynthetic process	2.30E-04
49	GO:0010310: regulation of hydrogen peroxide metabolic process	3.16E-04
50	GO:0019676: ammonia assimilation cycle	4.22E-04
51	GO:0019344: cysteine biosynthetic process	6.27E-04
52	GO:0009697: salicylic acid biosynthetic process	6.61E-04
53	GO:0016556: mRNA modification	6.61E-04
54	GO:0019761: glucosinolate biosynthetic process	6.93E-04
55	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	8.05E-04
56	GO:0009765: photosynthesis, light harvesting	8.05E-04
57	GO:0044272: sulfur compound biosynthetic process	9.88E-04
58	GO:0006875: cellular metal ion homeostasis	9.88E-04
59	GO:0080167: response to karrikin	1.06E-03
60	GO:0031408: oxylipin biosynthetic process	1.14E-03
61	GO:0009624: response to nematode	1.61E-03
62	GO:0006733: oxidoreduction coenzyme metabolic process	1.67E-03
63	GO:0051289: protein homotetramerization	1.67E-03
64	GO:0019760: glucosinolate metabolic process	1.67E-03
65	GO:0045454: cell redox homeostasis	1.76E-03
66	GO:0018298: protein-chromophore linkage	1.98E-03
67	GO:0009966: regulation of signal transduction	1.98E-03
68	GO:0006612: protein targeting to membrane	2.21E-03
69	GO:0010200: response to chitin	2.21E-03
70	GO:0006014: D-ribose metabolic process	2.40E-03
71	GO:0050821: protein stabilization	2.40E-03
72	GO:0016485: protein processing	2.40E-03
73	GO:0051260: protein homooligomerization	2.40E-03
74	GO:0009117: nucleotide metabolic process	2.40E-03
75	GO:0045037: protein import into chloroplast stroma	2.40E-03
76	GO:0035304: regulation of protein dephosphorylation	2.46E-03
77	GO:0010363: regulation of plant-type hypersensitive response	2.46E-03
78	GO:0042742: defense response to bacterium	2.69E-03
79	GO:0009867: jasmonic acid mediated signaling pathway	2.73E-03
80	GO:0031348: negative regulation of defense response	2.73E-03
81	GO:0006796: phosphate-containing compound metabolic process	3.26E-03
82	GO:0034755: iron ion transmembrane transport	3.26E-03
83	GO:0015994: chlorophyll metabolic process	3.26E-03
84	GO:0000165: MAPK cascade	4.03E-03
85	GO:0046688: response to copper ion	4.23E-03
86	GO:0017148: negative regulation of translation	4.23E-03
87	GO:0006568: tryptophan metabolic process	4.23E-03
88	GO:0006662: glycerol ether metabolic process	5.17E-03
89	GO:0010206: photosystem II repair	5.26E-03
90	GO:0034660: ncRNA metabolic process	5.26E-03
91	GO:0009411: response to UV	5.26E-03
92	GO:0009409: response to cold	6.24E-03
93	GO:0005985: sucrose metabolic process	6.38E-03
94	GO:0046939: nucleotide phosphorylation	6.38E-03
95	GO:0015977: carbon fixation	7.58E-03
96	GO:0000162: tryptophan biosynthetic process	7.58E-03
97	GO:0009658: chloroplast organization	8.48E-03
98	GO:0009832: plant-type cell wall biogenesis	8.85E-03
99	GO:0006096: glycolytic process	9.53E-03
100	GO:0006006: glucose metabolic process	1.02E-02
101	GO:0006754: ATP biosynthetic process	1.02E-02
102	GO:0006354: DNA-templated transcription, elongation	1.02E-02
103	GO:0008652: cellular amino acid biosynthetic process	1.14E-02
104	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.16E-02
105	GO:0022900: electron transport chain	1.27E-02
106	GO:0006655: phosphatidylglycerol biosynthetic process	1.46E-02
107	GO:0009767: photosynthetic electron transport chain	1.46E-02
108	GO:0042793: transcription from plastid promoter	1.46E-02
109	GO:0006108: malate metabolic process	1.46E-02
110	GO:0009750: response to fructose	1.79E-02
111	GO:0016049: cell growth	1.79E-02
112	GO:0006833: water transport	1.79E-02
113	GO:0045893: positive regulation of transcription, DNA-templated	1.86E-02
114	GO:0050832: defense response to fungus	1.95E-02
115	GO:0019684: photosynthesis, light reaction	1.96E-02
116	GO:0030154: cell differentiation	1.96E-02
117	GO:0015992: proton transport	1.96E-02
118	GO:0009749: response to glucose	1.96E-02
119	GO:0016126: sterol biosynthetic process	1.96E-02
120	GO:0006631: fatty acid metabolic process	1.96E-02
121	GO:0055114: oxidation-reduction process	2.12E-02
122	GO:0010155: regulation of proton transport	2.14E-02
123	GO:0009416: response to light stimulus	2.30E-02
124	GO:0010193: response to ozone	2.32E-02
125	GO:0006139: nucleobase-containing compound metabolic process	2.51E-02
126	GO:0046777: protein autophosphorylation	2.51E-02
127	GO:0009817: defense response to fungus, incompatible interaction	2.70E-02
128	GO:0009853: photorespiration	3.32E-02
129	GO:0000413: protein peptidyl-prolyl isomerization	3.54E-02
130	GO:0009735: response to cytokinin	3.98E-02
131	GO:0009737: response to abscisic acid	4.30E-02
132	GO:0006811: ion transport	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0015131: oxaloacetate transmembrane transporter activity	0.00E+00
2	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
3	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
4	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
5	GO:0009496: plastoquinol--plastocyanin reductase activity	0.00E+00
6	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
7	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
8	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
9	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
10	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
11	GO:0051738: xanthophyll binding	0.00E+00
12	GO:0016168: chlorophyll binding	1.08E-07
13	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.61E-05
14	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.24E-05
15	GO:0004332: fructose-bisphosphate aldolase activity	5.33E-05
16	GO:0015035: protein disulfide oxidoreductase activity	3.99E-04
17	GO:0015140: malate transmembrane transporter activity	4.22E-04
18	GO:0016679: oxidoreductase activity, acting on diphenols and related substances as donors	4.22E-04
19	GO:0004618: phosphoglycerate kinase activity	4.22E-04
20	GO:0015088: copper uptake transmembrane transporter activity	4.22E-04
21	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	9.88E-04
22	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	9.88E-04
23	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	1.67E-03
24	GO:0009055: electron carrier activity	2.23E-03
25	GO:0004747: ribokinase activity	2.40E-03
26	GO:0016984: ribulose-bisphosphate carboxylase activity	2.40E-03
27	GO:0051537: 2 iron, 2 sulfur cluster binding	2.73E-03
28	GO:0051287: NAD binding	3.18E-03
29	GO:0004470: malic enzyme activity	3.26E-03
30	GO:0004017: adenylate kinase activity	3.26E-03
31	GO:0005381: iron ion transmembrane transporter activity	3.26E-03
32	GO:0004834: tryptophan synthase activity	4.23E-03
33	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	5.26E-03
34	GO:0019201: nucleotide kinase activity	5.26E-03
35	GO:0008121: ubiquinol-cytochrome-c reductase activity	5.26E-03
36	GO:0019205: nucleobase-containing compound kinase activity	5.26E-03
37	GO:0008047: enzyme activator activity	6.38E-03
38	GO:0016776: phosphotransferase activity, phosphate group as acceptor	7.58E-03
39	GO:0004427: inorganic diphosphatase activity	7.58E-03
40	GO:0042578: phosphoric ester hydrolase activity	7.58E-03
41	GO:0008266: poly(U) RNA binding	7.58E-03
42	GO:0005215: transporter activity	9.88E-03
43	GO:0048037: cofactor binding	1.16E-02
44	GO:0003690: double-stranded DNA binding	1.16E-02
45	GO:0042803: protein homodimerization activity	1.34E-02
46	GO:0016829: lyase activity	1.35E-02
47	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.62E-02
48	GO:0004713: protein tyrosine kinase activity	1.79E-02
49	GO:0008080: N-acetyltransferase activity	1.96E-02
50	GO:0051536: iron-sulfur cluster binding	2.03E-02
51	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.49E-02
52	GO:0015297: antiporter activity	2.51E-02
53	GO:0015078: hydrogen ion transmembrane transporter activity	2.90E-02
54	GO:0016597: amino acid binding	3.32E-02
55	GO:0051539: 4 iron, 4 sulfur cluster binding	3.76E-02
56	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.98E-02
57	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.21E-02
58	GO:0016773: phosphotransferase activity, alcohol group as acceptor	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0009512: cytochrome b6f complex	0.00E+00
2	GO:0030093: chloroplast photosystem I	0.00E+00
3	GO:0009507: chloroplast	1.07E-31
4	GO:0009579: thylakoid	9.26E-24
5	GO:0009535: chloroplast thylakoid membrane	3.97E-23
6	GO:0009941: chloroplast envelope	7.07E-19
7	GO:0031977: thylakoid lumen	2.68E-14
8	GO:0009534: chloroplast thylakoid	4.07E-13
9	GO:0009522: photosystem I	7.13E-13
10	GO:0009543: chloroplast thylakoid lumen	2.12E-08
11	GO:0010287: plastoglobule	2.21E-08
12	GO:0009538: photosystem I reaction center	3.07E-07
13	GO:0009523: photosystem II	1.30E-06
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.00E-06
15	GO:0009570: chloroplast stroma	1.28E-05
16	GO:0016020: membrane	4.20E-05
17	GO:0009508: plastid chromosome	9.71E-05
18	GO:0048046: apoplast	1.10E-04
19	GO:0019898: extrinsic component of membrane	1.55E-04
20	GO:0009654: photosystem II oxygen evolving complex	2.28E-04
21	GO:0009706: chloroplast inner membrane	3.08E-04
22	GO:0009517: PSII associated light-harvesting complex II	4.22E-04
23	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	4.22E-04
24	GO:0010319: stromule	7.66E-04
25	GO:0009295: nucleoid	8.05E-04
26	GO:0042651: thylakoid membrane	1.14E-03
27	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	5.26E-03
28	GO:0009536: plastid	1.38E-02