Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G069708

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042549: photosystem II stabilization0.00E+00
2GO:0030243: cellulose metabolic process0.00E+00
3GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
4GO:0010207: photosystem II assembly3.79E-10
5GO:0010196: nonphotochemical quenching2.21E-08
6GO:0009657: plastid organization1.43E-07
7GO:0015979: photosynthesis1.73E-07
8GO:0035304: regulation of protein dephosphorylation3.28E-07
9GO:0006364: rRNA processing7.04E-07
10GO:0019344: cysteine biosynthetic process2.10E-06
11GO:0006098: pentose-phosphate shunt3.52E-06
12GO:0043085: positive regulation of catalytic activity1.37E-05
13GO:0042742: defense response to bacterium1.41E-05
14GO:0070838: divalent metal ion transport1.62E-05
15GO:0010205: photoinhibition4.14E-05
16GO:0030003: cellular cation homeostasis4.14E-05
17GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway7.02E-05
18GO:0019761: glucosinolate biosynthetic process8.28E-05
19GO:0019676: ammonia assimilation cycle1.43E-04
20GO:0071482: cellular response to light stimulus1.43E-04
21GO:0009590: detection of gravity1.43E-04
22GO:0009768: photosynthesis, light harvesting in photosystem I1.43E-04
23GO:0019253: reductive pentose-phosphate cycle1.43E-04
24GO:0009765: photosynthesis, light harvesting1.67E-04
25GO:0006636: unsaturated fatty acid biosynthetic process2.88E-04
26GO:0010236: plastoquinone biosynthetic process3.52E-04
27GO:0009052: pentose-phosphate shunt, non-oxidative branch3.52E-04
28GO:0019684: photosynthesis, light reaction3.87E-04
29GO:0009409: response to cold4.02E-04
30GO:0018298: protein-chromophore linkage4.42E-04
31GO:0009664: plant-type cell wall organization4.42E-04
32GO:0010155: regulation of proton transport4.42E-04
33GO:0009773: photosynthetic electron transport in photosystem I5.63E-04
34GO:0046777: protein autophosphorylation5.63E-04
35GO:0010027: thylakoid membrane organization5.79E-04
36GO:0005986: sucrose biosynthetic process6.05E-04
37GO:0019252: starch biosynthetic process6.13E-04
38GO:0071704: organic substance metabolic process8.95E-04
39GO:0009595: detection of biotic stimulus8.95E-04
40GO:0006662: glycerol ether metabolic process1.21E-03
41GO:0006569: tryptophan catabolic process1.22E-03
42GO:0043900: regulation of multi-organism process1.22E-03
43GO:0019748: secondary metabolic process1.22E-03
44GO:0016117: carotenoid biosynthetic process1.30E-03
45GO:0009637: response to blue light1.30E-03
46GO:0010114: response to red light1.51E-03
47GO:0009693: ethylene biosynthetic process1.57E-03
48GO:0010218: response to far red light1.73E-03
49GO:0000023: maltose metabolic process1.84E-03
50GO:0009108: coenzyme biosynthetic process1.94E-03
51GO:0010206: photosystem II repair1.94E-03
52GO:0009106: lipoate metabolic process1.94E-03
53GO:0006766: vitamin metabolic process1.94E-03
54GO:0016311: dephosphorylation2.08E-03
55GO:0009744: response to sucrose2.20E-03
56GO:0010310: regulation of hydrogen peroxide metabolic process2.32E-03
57GO:0000272: polysaccharide catabolic process2.32E-03
58GO:0009624: response to nematode2.59E-03
59GO:0015995: chlorophyll biosynthetic process2.59E-03
60GO:0009684: indoleacetic acid biosynthetic process3.19E-03
61GO:0005983: starch catabolic process3.19E-03
62GO:0009832: plant-type cell wall biogenesis3.19E-03
63GO:0006006: glucose metabolic process3.68E-03
64GO:0009697: salicylic acid biosynthetic process3.68E-03
65GO:0006814: sodium ion transport3.68E-03
66GO:0006546: glycine catabolic process4.18E-03
67GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway4.18E-03
68GO:0006108: malate metabolic process5.23E-03
69GO:0009767: photosynthetic electron transport chain5.23E-03
70GO:0044262: cellular carbohydrate metabolic process5.23E-03
71GO:0009750: response to fructose6.38E-03
72GO:0016049: cell growth6.38E-03
73GO:0006833: water transport6.38E-03
74GO:0016126: sterol biosynthetic process7.00E-03
75GO:0005975: carbohydrate metabolic process7.14E-03
76GO:0080167: response to karrikin7.35E-03
77GO:0006612: protein targeting to membrane8.26E-03
78GO:0010103: stomatal complex morphogenesis8.26E-03
79GO:0010200: response to chitin8.26E-03
80GO:0010363: regulation of plant-type hypersensitive response8.93E-03
81GO:0009867: jasmonic acid mediated signaling pathway9.61E-03
82GO:0009817: defense response to fungus, incompatible interaction9.61E-03
83GO:0031348: negative regulation of defense response9.61E-03
84GO:0009695: jasmonic acid biosynthetic process9.61E-03
85GO:0045454: cell redox homeostasis1.01E-02
86GO:0000165: MAPK cascade1.25E-02
87GO:0006520: cellular amino acid metabolic process1.25E-02
88GO:0030163: protein catabolic process1.33E-02
89GO:0009735: response to cytokinin1.41E-02
90GO:0006099: tricarboxylic acid cycle1.74E-02
91GO:0009658: chloroplast organization2.10E-02
92GO:0009644: response to high light intensity2.68E-02
93GO:0022900: electron transport chain2.78E-02
94GO:0045893: positive regulation of transcription, DNA-templated3.65E-02
95GO:0050832: defense response to fungus3.76E-02
96GO:0009416: response to light stimulus4.24E-02
RankGO TermAdjusted P value
1GO:0015131: oxaloacetate transmembrane transporter activity0.00E+00
2GO:0015139: alpha-ketoglutarate transmembrane transporter activity0.00E+00
3GO:0010357: homogentisate solanesyltransferase activity0.00E+00
4GO:0009496: plastoquinol--plastocyanin reductase activity0.00E+00
5GO:0010242: oxygen evolving activity0.00E+00
6GO:0010356: homogentisate geranylgeranyltransferase activity0.00E+00
7GO:0004614: phosphoglucomutase activity0.00E+00
8GO:0010355: homogentisate farnesyltransferase activity0.00E+00
9GO:0019200: carbohydrate kinase activity0.00E+00
10GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
11GO:0008266: poly(U) RNA binding8.05E-05
12GO:0015140: malate transmembrane transporter activity1.43E-04
13GO:0050307: sucrose-phosphate phosphatase activity1.43E-04
14GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity1.43E-04
15GO:0004750: ribulose-phosphate 3-epimerase activity1.43E-04
16GO:0008974: phosphoribulokinase activity1.43E-04
17GO:0016679: oxidoreductase activity, acting on diphenols and related substances as donors1.43E-04
18GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity3.52E-04
19GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity3.52E-04
20GO:0004751: ribose-5-phosphate isomerase activity3.52E-04
21GO:0016168: chlorophyll binding4.42E-04
22GO:0003959: NADPH dehydrogenase activity6.05E-04
23GO:0004324: ferredoxin-NADP+ reductase activity6.05E-04
24GO:0004659: prenyltransferase activity8.95E-04
25GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity8.95E-04
26GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives1.22E-03
27GO:0016868: intramolecular transferase activity, phosphotransferases1.22E-03
28GO:0016615: malate dehydrogenase activity1.94E-03
29GO:0008121: ubiquinol-cytochrome-c reductase activity1.94E-03
30GO:0016791: phosphatase activity1.96E-03
31GO:0050661: NADP binding2.32E-03
32GO:0008047: enzyme activator activity2.32E-03
33GO:0030060: L-malate dehydrogenase activity2.32E-03
34GO:0015035: protein disulfide oxidoreductase activity4.07E-03
35GO:0003993: acid phosphatase activity4.70E-03
36GO:0003824: catalytic activity6.65E-03
37GO:0051537: 2 iron, 2 sulfur cluster binding9.61E-03
38GO:0004222: metalloendopeptidase activity1.10E-02
39GO:0000287: magnesium ion binding1.20E-02
40GO:0008483: transaminase activity1.33E-02
41GO:0016853: isomerase activity1.37E-02
42GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.49E-02
43GO:0051287: NAD binding3.76E-02
44GO:0051536: iron-sulfur cluster binding3.88E-02
45GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor4.48E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009783: photosystem II antenna complex0.00E+00
3GO:0009279: cell outer membrane0.00E+00
4GO:0009579: thylakoid8.36E-19
5GO:0009507: chloroplast2.85E-15
6GO:0009535: chloroplast thylakoid membrane6.40E-15
7GO:0009941: chloroplast envelope2.54E-14
8GO:0009570: chloroplast stroma1.39E-11
9GO:0048046: apoplast3.18E-08
10GO:0010319: stromule5.91E-08
11GO:0010287: plastoglobule2.74E-07
12GO:0009522: photosystem I3.28E-07
13GO:0031977: thylakoid lumen3.39E-06
14GO:0009538: photosystem I reaction center8.51E-06
15GO:0009517: PSII associated light-harvesting complex II1.43E-04
16GO:0009534: chloroplast thylakoid2.16E-04
17GO:0042651: thylakoid membrane2.44E-04
18GO:0009543: chloroplast thylakoid lumen2.44E-04
19GO:0009533: chloroplast stromal thylakoid3.52E-04
20GO:0009523: photosystem II1.11E-03
21GO:0019898: extrinsic component of membrane1.57E-03
22GO:0009654: photosystem II oxygen evolving complex1.94E-03
23GO:0009536: plastid7.72E-03
24GO:0016020: membrane1.10E-02
25GO:0009706: chloroplast inner membrane1.10E-02