co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G068982

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0035436: triose phosphate transmembrane transport	0.00E+00
2	GO:0015714: phosphoenolpyruvate transport	0.00E+00
3	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
4	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
5	GO:0042550: photosystem I stabilization	0.00E+00
6	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
7	GO:0010028: xanthophyll cycle	0.00E+00
8	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	6.50E-11
9	GO:0015979: photosynthesis	3.22E-09
10	GO:0009108: coenzyme biosynthetic process	6.05E-09
11	GO:0009106: lipoate metabolic process	6.05E-09
12	GO:0006766: vitamin metabolic process	6.05E-09
13	GO:0006546: glycine catabolic process	1.27E-07
14	GO:0019748: secondary metabolic process	2.52E-07
15	GO:0006636: unsaturated fatty acid biosynthetic process	4.12E-07
16	GO:0010027: thylakoid membrane organization	5.99E-07
17	GO:0009773: photosynthetic electron transport in photosystem I	1.79E-06
18	GO:0009695: jasmonic acid biosynthetic process	2.28E-06
19	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.60E-06
20	GO:0043085: positive regulation of catalytic activity	3.17E-06
21	GO:0009072: aromatic amino acid family metabolic process	3.18E-06
22	GO:0010207: photosystem II assembly	5.25E-06
23	GO:0009902: chloroplast relocation	5.34E-06
24	GO:0006364: rRNA processing	7.14E-06
25	GO:0006733: oxidoreduction coenzyme metabolic process	9.60E-06
26	GO:0042793: transcription from plastid promoter	1.80E-05
27	GO:0019216: regulation of lipid metabolic process	2.24E-05
28	GO:0009117: nucleotide metabolic process	2.24E-05
29	GO:0045037: protein import into chloroplast stroma	2.24E-05
30	GO:0000096: sulfur amino acid metabolic process	4.19E-05
31	GO:0010155: regulation of proton transport	4.58E-05
32	GO:0015995: chlorophyll biosynthetic process	4.72E-05
33	GO:0034660: ncRNA metabolic process	1.02E-04
34	GO:0019344: cysteine biosynthetic process	2.33E-04
35	GO:0006878: cellular copper ion homeostasis	2.54E-04
36	GO:0006427: histidyl-tRNA aminoacylation	2.54E-04
37	GO:0019761: glucosinolate biosynthetic process	2.61E-04
38	GO:0006098: pentose-phosphate shunt	2.90E-04
39	GO:0009765: photosynthesis, light harvesting	3.85E-04
40	GO:0006655: phosphatidylglycerol biosynthetic process	5.50E-04
41	GO:0031408: oxylipin biosynthetic process	5.50E-04
42	GO:0044272: sulfur compound biosynthetic process	6.03E-04
43	GO:0006875: cellular metal ion homeostasis	6.03E-04
44	GO:0008652: cellular amino acid biosynthetic process	6.31E-04
45	GO:0030154: cell differentiation	8.57E-04
46	GO:0009657: plastid organization	8.57E-04
47	GO:0018298: protein-chromophore linkage	9.74E-04
48	GO:0007186: G-protein coupled receptor signaling pathway	1.03E-03
49	GO:0022904: respiratory electron transport chain	1.03E-03
50	GO:0010103: stomatal complex morphogenesis	1.10E-03
51	GO:0045893: positive regulation of transcription, DNA-templated	1.22E-03
52	GO:0035304: regulation of protein dephosphorylation	1.23E-03
53	GO:0046777: protein autophosphorylation	1.23E-03
54	GO:0006014: D-ribose metabolic process	1.51E-03
55	GO:0045038: protein import into chloroplast thylakoid membrane	1.51E-03
56	GO:0050821: protein stabilization	1.51E-03
57	GO:0016485: protein processing	1.51E-03
58	GO:0009595: detection of biotic stimulus	1.51E-03
59	GO:0000413: protein peptidyl-prolyl isomerization	2.00E-03
60	GO:0070838: divalent metal ion transport	2.03E-03
61	GO:0006796: phosphate-containing compound metabolic process	2.03E-03
62	GO:0006569: tryptophan catabolic process	2.03E-03
63	GO:0060416: response to growth hormone	2.03E-03
64	GO:0009772: photosynthetic electron transport in photosystem II	2.03E-03
65	GO:0043900: regulation of multi-organism process	2.03E-03
66	GO:0034755: iron ion transmembrane transport	2.03E-03
67	GO:0015994: chlorophyll metabolic process	2.03E-03
68	GO:0009073: aromatic amino acid family biosynthetic process	2.54E-03
69	GO:0006535: cysteine biosynthetic process from serine	2.59E-03
70	GO:0016117: carotenoid biosynthetic process	2.73E-03
71	GO:0009637: response to blue light	2.73E-03
72	GO:0010114: response to red light	3.17E-03
73	GO:0006801: superoxide metabolic process	3.22E-03
74	GO:0055072: iron ion homeostasis	3.22E-03
75	GO:0030003: cellular cation homeostasis	3.22E-03
76	GO:0009704: de-etiolation	3.22E-03
77	GO:0016226: iron-sulfur cluster assembly	3.41E-03
78	GO:0010218: response to far red light	3.66E-03
79	GO:0000023: maltose metabolic process	3.91E-03
80	GO:0010310: regulation of hydrogen peroxide metabolic process	3.92E-03
81	GO:0048868: pollen tube development	4.65E-03
82	GO:0009744: response to sucrose	4.71E-03
83	GO:0009684: indoleacetic acid biosynthetic process	5.40E-03
84	GO:0000302: response to reactive oxygen species	5.40E-03
85	GO:0006006: glucose metabolic process	6.22E-03
86	GO:0048527: lateral root development	6.22E-03
87	GO:0009697: salicylic acid biosynthetic process	6.22E-03
88	GO:0006354: DNA-templated transcription, elongation	6.22E-03
89	GO:0006814: sodium ion transport	6.22E-03
90	GO:0016556: mRNA modification	6.22E-03
91	GO:0009965: leaf morphogenesis	6.90E-03
92	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	7.07E-03
93	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	7.07E-03
94	GO:0010039: response to iron ion	7.07E-03
95	GO:0046854: phosphatidylinositol phosphorylation	7.96E-03
96	GO:0009767: photosynthetic electron transport chain	8.90E-03
97	GO:0015996: chlorophyll catabolic process	9.86E-03
98	GO:0019252: starch biosynthetic process	1.18E-02
99	GO:0019684: photosynthesis, light reaction	1.19E-02
100	GO:0009749: response to glucose	1.19E-02
101	GO:0006631: fatty acid metabolic process	1.19E-02
102	GO:0009966: regulation of signal transduction	1.30E-02
103	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.30E-02
104	GO:0006417: regulation of translation	1.30E-02
105	GO:0006612: protein targeting to membrane	1.41E-02
106	GO:0010200: response to chitin	1.41E-02
107	GO:0010182: sugar mediated signaling pathway	1.52E-02
108	GO:0010363: regulation of plant-type hypersensitive response	1.52E-02
109	GO:0009867: jasmonic acid mediated signaling pathway	1.64E-02
110	GO:0031348: negative regulation of defense response	1.64E-02
111	GO:0000165: MAPK cascade	2.14E-02
112	GO:0045454: cell redox homeostasis	2.18E-02
113	GO:0006418: tRNA aminoacylation for protein translation	3.60E-02
114	GO:0009658: chloroplast organization	3.60E-02
115	GO:0055114: oxidation-reduction process	3.71E-02
116	GO:0009624: response to nematode	4.43E-02
117	GO:0006812: cation transport	4.43E-02
118	GO:0009644: response to high light intensity	4.60E-02
119	GO:0030001: metal ion transport	4.78E-02
120	GO:0022900: electron transport chain	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
3	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
4	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
5	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
6	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
7	GO:0016532: superoxide dismutase copper chaperone activity	0.00E+00
8	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
9	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
10	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	2.60E-06
11	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.87E-06
12	GO:0016168: chlorophyll binding	4.58E-05
13	GO:0004821: histidine-tRNA ligase activity	2.54E-04
14	GO:0004618: phosphoglycerate kinase activity	2.54E-04
15	GO:0015088: copper uptake transmembrane transporter activity	2.54E-04
16	GO:0009055: electron carrier activity	4.92E-04
17	GO:0033897: ribonuclease T2 activity	1.03E-03
18	GO:0004124: cysteine synthase activity	1.51E-03
19	GO:0004747: ribokinase activity	1.51E-03
20	GO:0004765: shikimate kinase activity	1.51E-03
21	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.51E-03
22	GO:0005381: iron ion transmembrane transporter activity	2.03E-03
23	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.35E-03
24	GO:0004784: superoxide dismutase activity	3.92E-03
25	GO:0004427: inorganic diphosphatase activity	4.65E-03
26	GO:0003690: double-stranded DNA binding	7.07E-03
27	GO:0015035: protein disulfide oxidoreductase activity	8.76E-03
28	GO:0008080: N-acetyltransferase activity	1.19E-02
29	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.19E-02
30	GO:0015297: antiporter activity	1.52E-02
31	GO:0051539: 4 iron, 4 sulfur cluster binding	2.27E-02
32	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	2.55E-02
33	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.83E-02
34	GO:0004364: glutathione transferase activity	3.29E-02
35	GO:0004812: aminoacyl-tRNA ligase activity	3.92E-02
36	GO:0050661: NADP binding	4.09E-02
37	GO:0042803: protein homodimerization activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0030093: chloroplast photosystem I	0.00E+00
2	GO:0009507: chloroplast	1.74E-21
3	GO:0009941: chloroplast envelope	1.63E-11
4	GO:0009523: photosystem II	3.94E-09
5	GO:0009535: chloroplast thylakoid membrane	8.53E-09
6	GO:0009543: chloroplast thylakoid lumen	2.88E-07
7	GO:0009570: chloroplast stroma	3.06E-07
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.71E-07
9	GO:0009579: thylakoid	8.75E-07
10	GO:0031977: thylakoid lumen	1.72E-05
11	GO:0009534: chloroplast thylakoid	4.72E-05
12	GO:0009522: photosystem I	6.66E-05
13	GO:0019898: extrinsic component of membrane	6.83E-05
14	GO:0009654: photosystem II oxygen evolving complex	1.02E-04
15	GO:0009527: plastid outer membrane	2.54E-04
16	GO:0009528: plastid inner membrane	2.54E-04
17	GO:0009508: plastid chromosome	2.03E-03
18	GO:0010319: stromule	3.17E-03
19	GO:0009532: plastid stroma	3.92E-03
20	GO:0009295: nucleoid	7.07E-03
21	GO:0042651: thylakoid membrane	8.90E-03
22	GO:0009706: chloroplast inner membrane	1.88E-02
23	GO:0005739: mitochondrion	2.49E-02
24	GO:0048046: apoplast	3.61E-02