co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G065194

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
2	GO:1901259: chloroplast rRNA processing	0.00E+00
3	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
4	GO:0090342: regulation of cell aging	0.00E+00
5	GO:0032544: plastid translation	0.00E+00
6	GO:0071486: cellular response to high light intensity	0.00E+00
7	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
8	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
9	GO:0043043: peptide biosynthetic process	0.00E+00
10	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
11	GO:0042407: cristae formation	0.00E+00
12	GO:0042821: pyridoxal biosynthetic process	0.00E+00
13	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
14	GO:0043953: protein transport by the Tat complex	0.00E+00
15	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
16	GO:0032543: mitochondrial translation	0.00E+00
17	GO:0010027: thylakoid membrane organization	1.39E-31
18	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	6.18E-25
19	GO:0010207: photosystem II assembly	1.76E-15
20	GO:0009902: chloroplast relocation	2.24E-15
21	GO:0006364: rRNA processing	3.42E-15
22	GO:0042793: transcription from plastid promoter	1.38E-13
23	GO:0015995: chlorophyll biosynthetic process	2.85E-12
24	GO:0016226: iron-sulfur cluster assembly	3.72E-12
25	GO:0045036: protein targeting to chloroplast	5.11E-12
26	GO:0006412: translation	3.18E-10
27	GO:0009658: chloroplast organization	3.23E-10
28	GO:0006655: phosphatidylglycerol biosynthetic process	8.49E-10
29	GO:0006098: pentose-phosphate shunt	1.54E-08
30	GO:0035304: regulation of protein dephosphorylation	2.31E-08
31	GO:0045038: protein import into chloroplast thylakoid membrane	2.45E-08
32	GO:0006418: tRNA aminoacylation for protein translation	1.44E-07
33	GO:0045893: positive regulation of transcription, DNA-templated	2.70E-07
34	GO:0009073: aromatic amino acid family biosynthetic process	4.00E-07
35	GO:0006733: oxidoreduction coenzyme metabolic process	1.22E-06
36	GO:0009117: nucleotide metabolic process	5.62E-06
37	GO:0009773: photosynthetic electron transport in photosystem I	1.49E-05
38	GO:0019748: secondary metabolic process	1.55E-05
39	GO:0006546: glycine catabolic process	2.13E-05
40	GO:0006779: porphyrin-containing compound biosynthetic process	2.13E-05
41	GO:0042372: phylloquinone biosynthetic process	5.21E-05
42	GO:0006766: vitamin metabolic process	6.10E-05
43	GO:0009108: coenzyme biosynthetic process	6.10E-05
44	GO:0009106: lipoate metabolic process	6.10E-05
45	GO:0006636: unsaturated fatty acid biosynthetic process	6.17E-05
46	GO:0006399: tRNA metabolic process	1.00E-04
47	GO:0019684: photosynthesis, light reaction	1.08E-04
48	GO:0030154: cell differentiation	1.08E-04
49	GO:0019344: cysteine biosynthetic process	1.12E-04
50	GO:0016117: carotenoid biosynthetic process	1.12E-04
51	GO:0010103: stomatal complex morphogenesis	1.73E-04
52	GO:0048481: plant ovule development	2.44E-04
53	GO:0009695: jasmonic acid biosynthetic process	2.62E-04
54	GO:0006354: DNA-templated transcription, elongation	3.03E-04
55	GO:0006353: DNA-templated transcription, termination	3.53E-04
56	GO:0010228: vegetative to reproductive phase transition of meristem	5.67E-04
57	GO:0000096: sulfur amino acid metabolic process	6.03E-04
58	GO:0006569: tryptophan catabolic process	6.03E-04
59	GO:0009793: embryo development ending in seed dormancy	6.22E-04
60	GO:0034660: ncRNA metabolic process	1.30E-03
61	GO:0009768: photosynthesis, light harvesting in photosystem I	1.35E-03
62	GO:0009069: serine family amino acid metabolic process	1.35E-03
63	GO:0071722: detoxification of arsenic-containing substance	1.35E-03
64	GO:0006430: lysyl-tRNA aminoacylation	1.35E-03
65	GO:0009443: pyridoxal 5'-phosphate salvage	1.35E-03
66	GO:0006429: leucyl-tRNA aminoacylation	1.35E-03
67	GO:0008361: regulation of cell size	1.35E-03
68	GO:0006434: seryl-tRNA aminoacylation	1.35E-03
69	GO:0016050: vesicle organization	1.35E-03
70	GO:0018160: peptidyl-pyrromethane cofactor linkage	1.35E-03
71	GO:0006573: valine metabolic process	1.35E-03
72	GO:0006433: prolyl-tRNA aminoacylation	1.35E-03
73	GO:0006423: cysteinyl-tRNA aminoacylation	1.35E-03
74	GO:0042742: defense response to bacterium	2.03E-03
75	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.24E-03
76	GO:0009684: indoleacetic acid biosynthetic process	2.81E-03
77	GO:0009407: toxin catabolic process	2.81E-03
78	GO:0006432: phenylalanyl-tRNA aminoacylation	3.02E-03
79	GO:0010109: regulation of photosynthesis	3.02E-03
80	GO:0010236: plastoquinone biosynthetic process	3.02E-03
81	GO:0048653: anther development	3.02E-03
82	GO:0010380: regulation of chlorophyll biosynthetic process	3.02E-03
83	GO:0044272: sulfur compound biosynthetic process	3.02E-03
84	GO:0019464: glycine decarboxylation via glycine cleavage system	3.02E-03
85	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.02E-03
86	GO:0016556: mRNA modification	3.49E-03
87	GO:0043085: positive regulation of catalytic activity	3.55E-03
88	GO:0006200: obsolete ATP catabolic process	3.55E-03
89	GO:0015979: photosynthesis	3.76E-03
90	GO:0009965: leaf morphogenesis	3.84E-03
91	GO:0009735: response to cytokinin	4.42E-03
92	GO:0006184: obsolete GTP catabolic process	5.04E-03
93	GO:0034599: cellular response to oxidative stress	5.14E-03
94	GO:0009247: glycolipid biosynthetic process	5.14E-03
95	GO:0000304: response to singlet oxygen	5.14E-03
96	GO:0006450: regulation of translational fidelity	5.14E-03
97	GO:0007186: G-protein coupled receptor signaling pathway	5.14E-03
98	GO:0010731: protein glutathionylation	5.14E-03
99	GO:0043067: regulation of programmed cell death	5.14E-03
100	GO:0031408: oxylipin biosynthetic process	5.96E-03
101	GO:0019375: galactolipid biosynthetic process	7.62E-03
102	GO:0006183: GTP biosynthetic process	7.62E-03
103	GO:0006241: CTP biosynthetic process	7.62E-03
104	GO:0007389: pattern specification process	7.62E-03
105	GO:0030259: lipid glycosylation	7.62E-03
106	GO:0006782: protoporphyrinogen IX biosynthetic process	7.62E-03
107	GO:0009833: plant-type primary cell wall biogenesis	7.62E-03
108	GO:0006165: nucleoside diphosphate phosphorylation	7.62E-03
109	GO:0019216: regulation of lipid metabolic process	7.62E-03
110	GO:0006228: UTP biosynthetic process	7.62E-03
111	GO:0051205: protein insertion into membrane	7.62E-03
112	GO:0045037: protein import into chloroplast stroma	7.62E-03
113	GO:0042545: cell wall modification	8.00E-03
114	GO:0000023: maltose metabolic process	8.52E-03
115	GO:0009308: amine metabolic process	1.04E-02
116	GO:0009772: photosynthetic electron transport in photosystem II	1.04E-02
117	GO:0009813: flavonoid biosynthetic process	1.04E-02
118	GO:0006414: translational elongation	1.08E-02
119	GO:0009913: epidermal cell differentiation	1.35E-02
120	GO:0009306: protein secretion	1.35E-02
121	GO:0007005: mitochondrion organization	1.35E-02
122	GO:0009411: response to UV	1.69E-02
123	GO:0009814: defense response, incompatible interaction	1.69E-02
124	GO:0010583: response to cyclopentenone	1.69E-02
125	GO:0033014: tetrapyrrole biosynthetic process	1.69E-02
126	GO:0006801: superoxide metabolic process	1.69E-02
127	GO:0009926: auxin polar transport	1.69E-02
128	GO:0010205: photoinhibition	1.69E-02
129	GO:0043039: tRNA aminoacylation	2.06E-02
130	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.45E-02
131	GO:0040007: growth	2.45E-02
132	GO:0010015: root morphogenesis	2.45E-02
133	GO:0009072: aromatic amino acid family metabolic process	2.45E-02
134	GO:0009585: red, far-red light phototransduction	2.45E-02
135	GO:0009832: plant-type cell wall biogenesis	2.87E-02
136	GO:0009790: embryo development	3.20E-02
137	GO:0019761: glucosinolate biosynthetic process	3.20E-02
138	GO:0009697: salicylic acid biosynthetic process	3.31E-02
139	GO:0019252: starch biosynthetic process	3.44E-02
140	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.77E-02
141	GO:0006974: cellular response to DNA damage stimulus	3.77E-02
142	GO:0009765: photosynthesis, light harvesting	3.77E-02
143	GO:0006457: protein folding	4.08E-02
144	GO:0009409: response to cold	4.31E-02
145	GO:0008033: tRNA processing	4.76E-02
146	GO:0009767: photosynthetic electron transport chain	4.76E-02
147	GO:0051607: defense response to virus	4.76E-02
148	GO:0048316: seed development	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
2	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
3	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
4	GO:0031409: pigment binding	0.00E+00
5	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
6	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
7	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
8	GO:0005048: signal sequence binding	0.00E+00
9	GO:0005504: fatty acid binding	0.00E+00
10	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
11	GO:0046408: chlorophyll synthetase activity	0.00E+00
12	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
13	GO:0003735: structural constituent of ribosome	3.65E-08
14	GO:0004812: aminoacyl-tRNA ligase activity	2.39E-07
15	GO:0004765: shikimate kinase activity	3.53E-04
16	GO:0016209: antioxidant activity	3.53E-04
17	GO:0004659: prenyltransferase activity	3.53E-04
18	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.30E-03
19	GO:0004827: proline-tRNA ligase activity	1.35E-03
20	GO:0004418: hydroxymethylbilane synthase activity	1.35E-03
21	GO:0016851: magnesium chelatase activity	1.35E-03
22	GO:0004823: leucine-tRNA ligase activity	1.35E-03
23	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.35E-03
24	GO:0004828: serine-tRNA ligase activity	1.35E-03
25	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.35E-03
26	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.35E-03
27	GO:0004831: tyrosine-tRNA ligase activity	1.35E-03
28	GO:0035250: UDP-galactosyltransferase activity	1.35E-03
29	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	1.35E-03
30	GO:0070402: NADPH binding	1.35E-03
31	GO:0008194: UDP-glycosyltransferase activity	1.35E-03
32	GO:0004817: cysteine-tRNA ligase activity	1.35E-03
33	GO:0004824: lysine-tRNA ligase activity	1.35E-03
34	GO:0008312: 7S RNA binding	1.75E-03
35	GO:0004252: serine-type endopeptidase activity	1.93E-03
36	GO:0000049: tRNA binding	2.81E-03
37	GO:0045485: omega-6 fatty acid desaturase activity	3.02E-03
38	GO:0045430: chalcone isomerase activity	3.02E-03
39	GO:0051920: peroxiredoxin activity	3.02E-03
40	GO:0004826: phenylalanine-tRNA ligase activity	3.02E-03
41	GO:0004853: uroporphyrinogen decarboxylase activity	3.02E-03
42	GO:0000774: adenyl-nucleotide exchange factor activity	5.14E-03
43	GO:0016872: intramolecular lyase activity	5.14E-03
44	GO:0003746: translation elongation factor activity	7.18E-03
45	GO:0004550: nucleoside diphosphate kinase activity	7.62E-03
46	GO:0003913: DNA photolyase activity	7.62E-03
47	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	7.62E-03
48	GO:0070569: uridylyltransferase activity	7.62E-03
49	GO:0016887: ATPase activity	7.77E-03
50	GO:0016987: sigma factor activity	1.04E-02
51	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.04E-02
52	GO:0031072: heat shock protein binding	1.46E-02
53	GO:0051082: unfolded protein binding	1.61E-02
54	GO:0019843: rRNA binding	1.96E-02
55	GO:0051087: chaperone binding	2.06E-02
56	GO:0004784: superoxide dismutase activity	2.06E-02
57	GO:0043022: ribosome binding	2.06E-02
58	GO:0005525: GTP binding	2.20E-02
59	GO:0015035: protein disulfide oxidoreductase activity	2.38E-02
60	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.87E-02
61	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.87E-02
62	GO:0008236: serine-type peptidase activity	2.97E-02
63	GO:0003924: GTPase activity	3.72E-02
64	GO:0003723: RNA binding	4.63E-02
65	GO:0017111: nucleoside-triphosphatase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009782: photosystem I antenna complex	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0009507: chloroplast	1.84E-53
4	GO:0009570: chloroplast stroma	6.29E-44
5	GO:0009941: chloroplast envelope	1.53E-26
6	GO:0009535: chloroplast thylakoid membrane	1.12E-12
7	GO:0005840: ribosome	1.05E-11
8	GO:0009579: thylakoid	1.38E-09
9	GO:0009534: chloroplast thylakoid	2.93E-08
10	GO:0030529: intracellular ribonucleoprotein complex	4.48E-06
11	GO:0009840: chloroplastic endopeptidase Clp complex	1.55E-05
12	GO:0009295: nucleoid	2.13E-05
13	GO:0009532: plastid stroma	1.00E-04
14	GO:0005622: intracellular	3.72E-04
15	GO:0048500: signal recognition particle	1.30E-03
16	GO:0000311: plastid large ribosomal subunit	1.35E-03
17	GO:0009527: plastid outer membrane	1.35E-03
18	GO:0005960: glycine cleavage complex	1.35E-03
19	GO:0080085: signal recognition particle, chloroplast targeting	1.35E-03
20	GO:0009528: plastid inner membrane	1.35E-03
21	GO:0009706: chloroplast inner membrane	2.76E-03
22	GO:0055028: cortical microtubule	5.14E-03
23	GO:0009543: chloroplast thylakoid lumen	5.96E-03
24	GO:0009508: plastid chromosome	1.04E-02
25	GO:0019013: viral nucleocapsid	1.31E-02
26	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.35E-02
27	GO:0009523: photosystem II	2.54E-02
28	GO:0010319: stromule	3.44E-02
29	GO:0015934: large ribosomal subunit	3.44E-02
30	GO:0031977: thylakoid lumen	3.68E-02
31	GO:0042651: thylakoid membrane	4.76E-02