co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G063975

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
2	GO:1901259: chloroplast rRNA processing	0.00E+00
3	GO:0010028: xanthophyll cycle	0.00E+00
4	GO:0090342: regulation of cell aging	0.00E+00
5	GO:0032544: plastid translation	0.00E+00
6	GO:0071486: cellular response to high light intensity	0.00E+00
7	GO:0051188: cofactor biosynthetic process	0.00E+00
8	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
9	GO:0043043: peptide biosynthetic process	0.00E+00
10	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
11	GO:0042821: pyridoxal biosynthetic process	0.00E+00
12	GO:0042407: cristae formation	0.00E+00
13	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
14	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.56E-25
15	GO:0010027: thylakoid membrane organization	2.26E-23
16	GO:0010207: photosystem II assembly	8.63E-17
17	GO:0015995: chlorophyll biosynthetic process	7.38E-15
18	GO:0006098: pentose-phosphate shunt	1.13E-14
19	GO:0006364: rRNA processing	4.31E-14
20	GO:0006412: translation	4.18E-13
21	GO:0009902: chloroplast relocation	6.60E-13
22	GO:0042793: transcription from plastid promoter	2.32E-12
23	GO:0016226: iron-sulfur cluster assembly	1.46E-11
24	GO:0009658: chloroplast organization	1.21E-09
25	GO:0006766: vitamin metabolic process	3.99E-09
26	GO:0009108: coenzyme biosynthetic process	3.99E-09
27	GO:0009106: lipoate metabolic process	3.99E-09
28	GO:0006655: phosphatidylglycerol biosynthetic process	1.22E-08
29	GO:0006636: unsaturated fatty acid biosynthetic process	2.13E-08
30	GO:0019748: secondary metabolic process	5.56E-08
31	GO:0000096: sulfur amino acid metabolic process	5.56E-08
32	GO:0035304: regulation of protein dephosphorylation	1.93E-07
33	GO:0006546: glycine catabolic process	2.11E-07
34	GO:0045036: protein targeting to chloroplast	3.59E-07
35	GO:0006733: oxidoreduction coenzyme metabolic process	5.90E-07
36	GO:0045893: positive regulation of transcription, DNA-templated	7.10E-07
37	GO:0016117: carotenoid biosynthetic process	2.75E-06
38	GO:0009117: nucleotide metabolic process	2.76E-06
39	GO:0045038: protein import into chloroplast thylakoid membrane	2.76E-06
40	GO:0009773: photosynthetic electron transport in photosystem I	5.35E-06
41	GO:0009695: jasmonic acid biosynthetic process	7.14E-06
42	GO:0006418: tRNA aminoacylation for protein translation	9.72E-06
43	GO:0042372: phylloquinone biosynthetic process	3.13E-05
44	GO:0044272: sulfur compound biosynthetic process	3.13E-05
45	GO:0009073: aromatic amino acid family biosynthetic process	3.64E-05
46	GO:0030154: cell differentiation	4.89E-05
47	GO:0006399: tRNA metabolic process	5.29E-05
48	GO:0015979: photosynthesis	5.67E-05
49	GO:0009072: aromatic amino acid family metabolic process	8.17E-05
50	GO:0048481: plant ovule development	1.00E-04
51	GO:0006354: DNA-templated transcription, elongation	1.66E-04
52	GO:0019216: regulation of lipid metabolic process	2.26E-04
53	GO:0010228: vegetative to reproductive phase transition of meristem	2.50E-04
54	GO:0006569: tryptophan catabolic process	3.90E-04
55	GO:0019344: cysteine biosynthetic process	4.55E-04
56	GO:0019761: glucosinolate biosynthetic process	5.16E-04
57	GO:0019684: photosynthesis, light reaction	6.73E-04
58	GO:0010155: regulation of proton transport	8.01E-04
59	GO:0034660: ncRNA metabolic process	8.55E-04
60	GO:0009793: embryo development ending in seed dormancy	8.59E-04
61	GO:0006573: valine metabolic process	1.02E-03
62	GO:0006433: prolyl-tRNA aminoacylation	1.02E-03
63	GO:0032543: mitochondrial translation	1.02E-03
64	GO:0006423: cysteinyl-tRNA aminoacylation	1.02E-03
65	GO:0009768: photosynthesis, light harvesting in photosystem I	1.02E-03
66	GO:0009069: serine family amino acid metabolic process	1.02E-03
67	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	1.02E-03
68	GO:0019676: ammonia assimilation cycle	1.02E-03
69	GO:0009443: pyridoxal 5'-phosphate salvage	1.02E-03
70	GO:0008361: regulation of cell size	1.02E-03
71	GO:0006434: seryl-tRNA aminoacylation	1.02E-03
72	GO:0008652: cellular amino acid biosynthetic process	1.47E-03
73	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.50E-03
74	GO:0009684: indoleacetic acid biosynthetic process	1.89E-03
75	GO:0043085: positive regulation of catalytic activity	1.89E-03
76	GO:0009965: leaf morphogenesis	2.03E-03
77	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.28E-03
78	GO:0006432: phenylalanyl-tRNA aminoacylation	2.28E-03
79	GO:0010109: regulation of photosynthesis	2.28E-03
80	GO:0010236: plastoquinone biosynthetic process	2.28E-03
81	GO:0048653: anther development	2.28E-03
82	GO:0016556: mRNA modification	2.31E-03
83	GO:0006184: obsolete GTP catabolic process	2.40E-03
84	GO:0009765: photosynthesis, light harvesting	2.78E-03
85	GO:0006779: porphyrin-containing compound biosynthetic process	2.78E-03
86	GO:0043067: regulation of programmed cell death	3.86E-03
87	GO:0034599: cellular response to oxidative stress	3.86E-03
88	GO:0007186: G-protein coupled receptor signaling pathway	3.86E-03
89	GO:0009767: photosynthetic electron transport chain	3.93E-03
90	GO:0031408: oxylipin biosynthetic process	3.93E-03
91	GO:0042545: cell wall modification	5.27E-03
92	GO:0010304: PSII associated light-harvesting complex II catabolic process	5.70E-03
93	GO:0051205: protein insertion into membrane	5.70E-03
94	GO:0045037: protein import into chloroplast stroma	5.70E-03
95	GO:0006353: DNA-templated transcription, termination	5.70E-03
96	GO:0007389: pattern specification process	5.70E-03
97	GO:0006631: fatty acid metabolic process	6.03E-03
98	GO:0006414: translational elongation	6.38E-03
99	GO:0018298: protein-chromophore linkage	6.86E-03
100	GO:0010103: stomatal complex morphogenesis	7.73E-03
101	GO:0009813: flavonoid biosynthetic process	7.79E-03
102	GO:0007568: aging	7.79E-03
103	GO:0015994: chlorophyll metabolic process	7.79E-03
104	GO:0070838: divalent metal ion transport	7.79E-03
105	GO:0060416: response to growth hormone	7.79E-03
106	GO:0009772: photosynthetic electron transport in photosystem II	7.79E-03
107	GO:0042742: defense response to bacterium	8.02E-03
108	GO:0006200: obsolete ATP catabolic process	9.78E-03
109	GO:0009913: epidermal cell differentiation	1.01E-02
110	GO:0007005: mitochondrion organization	1.01E-02
111	GO:0006542: glutamine biosynthetic process	1.01E-02
112	GO:0010205: photoinhibition	1.26E-02
113	GO:0030003: cellular cation homeostasis	1.26E-02
114	GO:0009704: de-etiolation	1.26E-02
115	GO:0009814: defense response, incompatible interaction	1.26E-02
116	GO:0010206: photosystem II repair	1.26E-02
117	GO:0006801: superoxide metabolic process	1.26E-02
118	GO:0009926: auxin polar transport	1.26E-02
119	GO:0043039: tRNA aminoacylation	1.53E-02
120	GO:0009735: response to cytokinin	1.68E-02
121	GO:0006662: glycerol ether metabolic process	1.82E-02
122	GO:0040007: growth	1.83E-02
123	GO:0010015: root morphogenesis	1.83E-02
124	GO:0009416: response to light stimulus	1.95E-02
125	GO:0009637: response to blue light	1.97E-02
126	GO:0009832: plant-type cell wall biogenesis	2.14E-02
127	GO:0009407: toxin catabolic process	2.14E-02
128	GO:0010114: response to red light	2.27E-02
129	GO:0048527: lateral root development	2.46E-02
130	GO:0009697: salicylic acid biosynthetic process	2.46E-02
131	GO:0010218: response to far red light	2.61E-02
132	GO:0000023: maltose metabolic process	2.79E-02
133	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.81E-02
134	GO:0080167: response to karrikin	2.97E-02
135	GO:0009744: response to sucrose	3.36E-02
136	GO:0048316: seed development	3.55E-02
137	GO:0008033: tRNA processing	3.55E-02
138	GO:0015996: chlorophyll catabolic process	3.94E-02
139	GO:0010075: regulation of meristem growth	3.94E-02
140	GO:0007030: Golgi organization	3.94E-02
141	GO:0010197: polar nucleus fusion	3.94E-02
142	GO:0009644: response to high light intensity	4.20E-02
143	GO:0006833: water transport	4.35E-02
144	GO:0006972: hyperosmotic response	4.35E-02
145	GO:0009750: response to fructose	4.35E-02
146	GO:0022900: electron transport chain	4.42E-02
147	GO:0009749: response to glucose	4.77E-02
148	GO:0009657: plastid organization	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
2	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
3	GO:0031409: pigment binding	0.00E+00
4	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
5	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
6	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
7	GO:0005048: signal sequence binding	0.00E+00
8	GO:0005504: fatty acid binding	0.00E+00
9	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
10	GO:0045550: geranylgeranyl reductase activity	0.00E+00
11	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
12	GO:0003735: structural constituent of ribosome	1.82E-11
13	GO:0004812: aminoacyl-tRNA ligase activity	1.40E-05
14	GO:0019843: rRNA binding	2.16E-04
15	GO:0004765: shikimate kinase activity	2.26E-04
16	GO:0016209: antioxidant activity	2.26E-04
17	GO:0004817: cysteine-tRNA ligase activity	1.02E-03
18	GO:0034256: chlorophyll(ide) b reductase activity	1.02E-03
19	GO:0004827: proline-tRNA ligase activity	1.02E-03
20	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.02E-03
21	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.02E-03
22	GO:0016851: magnesium chelatase activity	1.02E-03
23	GO:0004828: serine-tRNA ligase activity	1.02E-03
24	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.02E-03
25	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.02E-03
26	GO:0004831: tyrosine-tRNA ligase activity	1.02E-03
27	GO:0070402: NADPH binding	1.02E-03
28	GO:0008312: 7S RNA binding	1.16E-03
29	GO:0000049: tRNA binding	1.89E-03
30	GO:0045485: omega-6 fatty acid desaturase activity	2.28E-03
31	GO:0045430: chalcone isomerase activity	2.28E-03
32	GO:0051920: peroxiredoxin activity	2.28E-03
33	GO:0004826: phenylalanine-tRNA ligase activity	2.28E-03
34	GO:0033897: ribonuclease T2 activity	3.86E-03
35	GO:0016872: intramolecular lyase activity	3.86E-03
36	GO:0032549: ribonucleoside binding	3.86E-03
37	GO:0003746: translation elongation factor activity	4.22E-03
38	GO:0003913: DNA photolyase activity	5.70E-03
39	GO:0071949: FAD binding	5.70E-03
40	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	5.70E-03
41	GO:0004659: prenyltransferase activity	5.70E-03
42	GO:0016168: chlorophyll binding	6.86E-03
43	GO:0003723: RNA binding	7.44E-03
44	GO:0016987: sigma factor activity	7.79E-03
45	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	7.79E-03
46	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	8.55E-03
47	GO:0051537: 2 iron, 2 sulfur cluster binding	9.64E-03
48	GO:0004356: glutamate-ammonia ligase activity	1.01E-02
49	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.26E-02
50	GO:0004784: superoxide dismutase activity	1.53E-02
51	GO:0003924: GTPase activity	1.85E-02
52	GO:0016887: ATPase activity	1.86E-02
53	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.14E-02
54	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.14E-02
55	GO:0005525: GTP binding	2.52E-02
56	GO:0017111: nucleoside-triphosphatase activity	2.65E-02
57	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0009782: photosystem I antenna complex	0.00E+00
2	GO:0009507: chloroplast	4.06E-49
3	GO:0009570: chloroplast stroma	3.36E-41
4	GO:0009941: chloroplast envelope	2.92E-22
5	GO:0005840: ribosome	7.93E-15
6	GO:0009535: chloroplast thylakoid membrane	2.12E-11
7	GO:0009579: thylakoid	7.73E-09
8	GO:0009543: chloroplast thylakoid lumen	5.83E-07
9	GO:0030529: intracellular ribonucleoprotein complex	2.23E-06
10	GO:0009295: nucleoid	9.08E-06
11	GO:0009534: chloroplast thylakoid	2.29E-05
12	GO:0005622: intracellular	7.03E-05
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.99E-04
14	GO:0048500: signal recognition particle	8.55E-04
15	GO:0080085: signal recognition particle, chloroplast targeting	1.02E-03
16	GO:0009528: plastid inner membrane	1.02E-03
17	GO:0000311: plastid large ribosomal subunit	1.02E-03
18	GO:0009527: plastid outer membrane	1.02E-03
19	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.02E-03
20	GO:0009523: photosystem II	2.58E-03
21	GO:0015934: large ribosomal subunit	3.85E-03
22	GO:0055028: cortical microtubule	3.86E-03
23	GO:0031977: thylakoid lumen	4.22E-03
24	GO:0009840: chloroplastic endopeptidase Clp complex	7.79E-03
25	GO:0009532: plastid stroma	1.53E-02
26	GO:0010319: stromule	2.27E-02
27	GO:0042651: thylakoid membrane	3.55E-02