Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G063942

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010165: response to X-ray0.00E+00
2GO:0060148: positive regulation of posttranscriptional gene silencing0.00E+00
3GO:0045694: regulation of embryo sac egg cell differentiation0.00E+00
4GO:0031204: posttranslational protein targeting to membrane, translocation0.00E+00
5GO:0051276: chromosome organization3.08E-05
6GO:0080141: regulation of jasmonic acid biosynthetic process1.55E-04
7GO:0007059: chromosome segregation1.55E-04
8GO:0051512: positive regulation of unidimensional cell growth1.55E-04
9GO:0010587: miRNA catabolic process1.55E-04
10GO:0006370: 7-methylguanosine mRNA capping1.55E-04
11GO:0007064: mitotic sister chromatid cohesion1.55E-04
12GO:0009968: negative regulation of signal transduction1.55E-04
13GO:0019427: acetyl-CoA biosynthetic process from acetate1.55E-04
14GO:0043157: response to cation stress1.55E-04
15GO:0007062: sister chromatid cohesion3.75E-04
16GO:0010109: regulation of photosynthesis3.80E-04
17GO:0006083: acetate metabolic process3.80E-04
18GO:0034389: lipid particle organization3.80E-04
19GO:0007094: mitotic spindle assembly checkpoint6.51E-04
20GO:0010152: pollen maturation6.51E-04
21GO:0009867: jasmonic acid mediated signaling pathway7.00E-04
22GO:0006401: RNA catabolic process9.64E-04
23GO:0006790: sulfur compound metabolic process9.64E-04
24GO:0070588: calcium ion transmembrane transport1.31E-03
25GO:0010072: primary shoot apical meristem specification1.31E-03
26GO:0006561: proline biosynthetic process1.69E-03
27GO:0030422: production of siRNA involved in RNA interference2.08E-03
28GO:0010025: wax biosynthetic process2.08E-03
29GO:0016311: dephosphorylation2.29E-03
30GO:0000741: karyogamy2.49E-03
31GO:0010074: maintenance of meristem identity2.49E-03
32GO:0010310: regulation of hydrogen peroxide metabolic process2.49E-03
33GO:0009615: response to virus2.49E-03
34GO:0009628: response to abiotic stimulus2.49E-03
35GO:0006302: double-strand break repair2.94E-03
36GO:0010051: xylem and phloem pattern formation3.43E-03
37GO:0006312: mitotic recombination3.95E-03
38GO:0019915: lipid storage4.50E-03
39GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway4.50E-03
40GO:0007033: vacuole organization5.04E-03
41GO:0016571: histone methylation5.04E-03
42GO:0035335: peptidyl-tyrosine dephosphorylation5.04E-03
43GO:0046854: phosphatidylinositol phosphorylation5.04E-03
44GO:0006406: mRNA export from nucleus5.63E-03
45GO:0051607: defense response to virus5.63E-03
46GO:0010162: seed dormancy process6.23E-03
47GO:0006261: DNA-dependent DNA replication6.87E-03
48GO:0009630: gravitropism6.87E-03
49GO:0050826: response to freezing6.87E-03
50GO:0000724: double-strand break repair via homologous recombination7.53E-03
51GO:0006914: autophagy7.53E-03
52GO:0009749: response to glucose7.53E-03
53GO:0006470: protein dephosphorylation8.16E-03
54GO:0010267: production of ta-siRNAs involved in RNA interference8.19E-03
55GO:0035196: production of miRNAs involved in gene silencing by miRNA8.19E-03
56GO:0010193: response to ozone8.89E-03
57GO:0006612: protein targeting to membrane8.89E-03
58GO:0010363: regulation of plant-type hypersensitive response9.61E-03
59GO:0035304: regulation of protein dephosphorylation9.61E-03
60GO:0010182: sugar mediated signaling pathway9.61E-03
61GO:0009553: embryo sac development1.03E-02
62GO:0031348: negative regulation of defense response1.03E-02
63GO:0016567: protein ubiquitination1.06E-02
64GO:0006281: DNA repair1.06E-02
65GO:0006623: protein targeting to vacuole1.11E-02
66GO:0009751: response to salicylic acid1.11E-02
67GO:0009738: abscisic acid-activated signaling pathway1.11E-02
68GO:0009845: seed germination1.19E-02
69GO:0000165: MAPK cascade1.35E-02
70GO:0009933: meristem structural organization1.35E-02
71GO:0009560: embryo sac egg cell differentiation1.43E-02
72GO:0048573: photoperiodism, flowering1.52E-02
73GO:0006397: mRNA processing1.60E-02
74GO:0016579: protein deubiquitination1.60E-02
75GO:0009640: photomorphogenesis2.26E-02
76GO:0009617: response to bacterium2.26E-02
77GO:0009744: response to sucrose2.46E-02
78GO:0000398: mRNA splicing, via spliceosome2.57E-02
79GO:0006812: cation transport2.78E-02
80GO:0009624: response to nematode2.78E-02
81GO:0007165: signal transduction2.86E-02
82GO:0010228: vegetative to reproductive phase transition of meristem2.89E-02
83GO:0006913: nucleocytoplasmic transport3.34E-02
84GO:0006886: intracellular protein transport3.83E-02
85GO:0045893: positive regulation of transcription, DNA-templated3.93E-02
86GO:0009416: response to light stimulus4.56E-02
87GO:0009909: regulation of flower development4.56E-02
RankGO TermAdjusted P value
1GO:0008420: CTD phosphatase activity0.00E+00
2GO:0004484: mRNA guanylyltransferase activity0.00E+00
3GO:0004651: polynucleotide 5'-phosphatase activity0.00E+00
4GO:0035299: inositol pentakisphosphate 2-kinase activity1.55E-04
5GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.55E-04
6GO:0019905: syntaxin binding1.55E-04
7GO:0003968: RNA-directed 5'-3' RNA polymerase activity1.55E-04
8GO:0016208: AMP binding1.55E-04
9GO:0004350: glutamate-5-semialdehyde dehydrogenase activity3.80E-04
10GO:0019204: obsolete nucleotide phosphatase activity3.80E-04
11GO:0003987: acetate-CoA ligase activity6.51E-04
12GO:2001070: starch binding9.64E-04
13GO:0005388: calcium-transporting ATPase activity9.64E-04
14GO:0016791: phosphatase activity2.16E-03
15GO:0008138: protein tyrosine/serine/threonine phosphatase activity4.50E-03
16GO:0004725: protein tyrosine phosphatase activity6.23E-03
17GO:0019829: cation-transporting ATPase activity8.19E-03
18GO:0008565: protein transporter activity1.03E-02
19GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.60E-02
20GO:0005516: calmodulin binding2.36E-02
21GO:0008026: ATP-dependent helicase activity2.67E-02
22GO:0030246: carbohydrate binding2.78E-02
23GO:0042803: protein homodimerization activity3.11E-02
24GO:0016881: acid-amino acid ligase activity3.45E-02
25GO:0004386: helicase activity4.82E-02
RankGO TermAdjusted P value
1GO:0016363: nuclear matrix1.55E-04
2GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane1.55E-04
3GO:0000775: chromosome, centromeric region6.51E-04
4GO:0005819: spindle7.00E-04
5GO:0030915: Smc5-Smc6 complex9.64E-04
6GO:0000776: kinetochore9.64E-04
7GO:0009524: phragmoplast1.34E-03
8GO:0005694: chromosome1.84E-03
9GO:0000785: chromatin2.49E-03
10GO:0005681: spliceosomal complex4.50E-03
11GO:0005829: cytosol4.32E-02
12GO:0009506: plasmodesma4.43E-02