co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G062788

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032543: mitochondrial translation	0.00E+00
2	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
3	GO:0090342: regulation of cell aging	0.00E+00
4	GO:1901259: chloroplast rRNA processing	0.00E+00
5	GO:0032544: plastid translation	0.00E+00
6	GO:0010028: xanthophyll cycle	0.00E+00
7	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
8	GO:0071486: cellular response to high light intensity	0.00E+00
9	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
10	GO:0051188: cofactor biosynthetic process	0.00E+00
11	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
12	GO:0043043: peptide biosynthetic process	0.00E+00
13	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
14	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
15	GO:0042821: pyridoxal biosynthetic process	0.00E+00
16	GO:0042407: cristae formation	0.00E+00
17	GO:0090391: granum assembly	0.00E+00
18	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
19	GO:0043953: protein transport by the Tat complex	0.00E+00
20	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
21	GO:0010027: thylakoid membrane organization	1.43E-28
22	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	9.90E-27
23	GO:0009902: chloroplast relocation	7.48E-15
24	GO:0015995: chlorophyll biosynthetic process	3.73E-14
25	GO:0042793: transcription from plastid promoter	7.50E-14
26	GO:0006364: rRNA processing	2.80E-13
27	GO:0010207: photosystem II assembly	6.76E-13
28	GO:0006655: phosphatidylglycerol biosynthetic process	6.02E-12
29	GO:0045036: protein targeting to chloroplast	1.49E-10
30	GO:0016226: iron-sulfur cluster assembly	3.08E-10
31	GO:0006098: pentose-phosphate shunt	9.07E-10
32	GO:0009658: chloroplast organization	9.94E-10
33	GO:0006412: translation	2.99E-08
34	GO:0009108: coenzyme biosynthetic process	1.11E-07
35	GO:0006766: vitamin metabolic process	1.11E-07
36	GO:0009106: lipoate metabolic process	1.11E-07
37	GO:0045038: protein import into chloroplast thylakoid membrane	1.56E-07
38	GO:0006546: glycine catabolic process	1.62E-07
39	GO:0035304: regulation of protein dephosphorylation	4.14E-07
40	GO:0016117: carotenoid biosynthetic process	6.20E-07
41	GO:0045893: positive regulation of transcription, DNA-templated	8.67E-07
42	GO:0019748: secondary metabolic process	8.73E-07
43	GO:0000096: sulfur amino acid metabolic process	8.73E-07
44	GO:0006636: unsaturated fatty acid biosynthetic process	9.55E-07
45	GO:0006418: tRNA aminoacylation for protein translation	3.33E-06
46	GO:0006733: oxidoreduction coenzyme metabolic process	5.20E-06
47	GO:0009073: aromatic amino acid family biosynthetic process	6.50E-06
48	GO:0009695: jasmonic acid biosynthetic process	1.10E-05
49	GO:0009117: nucleotide metabolic process	2.29E-05
50	GO:0030154: cell differentiation	4.33E-05
51	GO:0019761: glucosinolate biosynthetic process	1.07E-04
52	GO:0006779: porphyrin-containing compound biosynthetic process	1.10E-04
53	GO:0042372: phylloquinone biosynthetic process	1.38E-04
54	GO:0044272: sulfur compound biosynthetic process	1.38E-04
55	GO:0034660: ncRNA metabolic process	2.16E-04
56	GO:0048481: plant ovule development	2.18E-04
57	GO:0006399: tRNA metabolic process	3.43E-04
58	GO:0000304: response to singlet oxygen	4.22E-04
59	GO:0019684: photosynthesis, light reaction	4.73E-04
60	GO:0009072: aromatic amino acid family metabolic process	5.03E-04
61	GO:0019344: cysteine biosynthetic process	6.18E-04
62	GO:0009407: toxin catabolic process	7.02E-04
63	GO:0010103: stomatal complex morphogenesis	7.22E-04
64	GO:0006353: DNA-templated transcription, termination	8.45E-04
65	GO:0019216: regulation of lipid metabolic process	8.45E-04
66	GO:0009773: photosynthetic electron transport in photosystem I	8.77E-04
67	GO:0006354: DNA-templated transcription, elongation	9.47E-04
68	GO:0015979: photosynthesis	1.42E-03
69	GO:0009308: amine metabolic process	1.42E-03
70	GO:0006569: tryptophan catabolic process	1.42E-03
71	GO:0009767: photosynthetic electron transport chain	1.94E-03
72	GO:0031408: oxylipin biosynthetic process	1.94E-03
73	GO:0009306: protein secretion	2.11E-03
74	GO:0018160: peptidyl-pyrromethane cofactor linkage	2.35E-03
75	GO:0006573: valine metabolic process	2.35E-03
76	GO:0006433: prolyl-tRNA aminoacylation	2.35E-03
77	GO:0006423: cysteinyl-tRNA aminoacylation	2.35E-03
78	GO:0009768: photosynthesis, light harvesting in photosystem I	2.35E-03
79	GO:0009069: serine family amino acid metabolic process	2.35E-03
80	GO:0071722: detoxification of arsenic-containing substance	2.35E-03
81	GO:0006430: lysyl-tRNA aminoacylation	2.35E-03
82	GO:0009443: pyridoxal 5'-phosphate salvage	2.35E-03
83	GO:0006429: leucyl-tRNA aminoacylation	2.35E-03
84	GO:0008361: regulation of cell size	2.35E-03
85	GO:0006434: seryl-tRNA aminoacylation	2.35E-03
86	GO:0016050: vesicle organization	2.35E-03
87	GO:0006788: heme oxidation	2.35E-03
88	GO:0010228: vegetative to reproductive phase transition of meristem	2.61E-03
89	GO:0030003: cellular cation homeostasis	2.95E-03
90	GO:0006200: obsolete ATP catabolic process	3.17E-03
91	GO:0009965: leaf morphogenesis	3.49E-03
92	GO:0009793: embryo development ending in seed dormancy	4.97E-03
93	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.18E-03
94	GO:1901671: positive regulation of superoxide dismutase activity	5.42E-03
95	GO:0019464: glycine decarboxylation via glycine cleavage system	5.42E-03
96	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.42E-03
97	GO:0006432: phenylalanyl-tRNA aminoacylation	5.42E-03
98	GO:0010236: plastoquinone biosynthetic process	5.42E-03
99	GO:0010253: UDP-rhamnose biosynthetic process	5.42E-03
100	GO:0051555: flavonol biosynthetic process	5.42E-03
101	GO:0010109: regulation of photosynthesis	5.42E-03
102	GO:0010024: phytochromobilin biosynthetic process	5.42E-03
103	GO:0010192: mucilage biosynthetic process	5.42E-03
104	GO:0048653: anther development	5.42E-03
105	GO:0010380: regulation of chlorophyll biosynthetic process	5.42E-03
106	GO:0009225: nucleotide-sugar metabolic process	5.42E-03
107	GO:0000023: maltose metabolic process	5.71E-03
108	GO:0009684: indoleacetic acid biosynthetic process	6.55E-03
109	GO:0006184: obsolete GTP catabolic process	6.89E-03
110	GO:0016556: mRNA modification	8.10E-03
111	GO:0043067: regulation of programmed cell death	9.24E-03
112	GO:0034599: cellular response to oxidative stress	9.24E-03
113	GO:0009247: glycolipid biosynthetic process	9.24E-03
114	GO:0006450: regulation of translational fidelity	9.24E-03
115	GO:0007186: G-protein coupled receptor signaling pathway	9.24E-03
116	GO:0010731: protein glutathionylation	9.24E-03
117	GO:0045226: extracellular polysaccharide biosynthetic process	9.24E-03
118	GO:0016075: rRNA catabolic process	9.24E-03
119	GO:0009765: photosynthesis, light harvesting	9.83E-03
120	GO:0008652: cellular amino acid biosynthetic process	1.00E-02
121	GO:0043085: positive regulation of catalytic activity	1.28E-02
122	GO:0009735: response to cytokinin	1.29E-02
123	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.37E-02
124	GO:0051205: protein insertion into membrane	1.37E-02
125	GO:0045037: protein import into chloroplast stroma	1.37E-02
126	GO:0019375: galactolipid biosynthetic process	1.37E-02
127	GO:0006183: GTP biosynthetic process	1.37E-02
128	GO:0006241: CTP biosynthetic process	1.37E-02
129	GO:0010214: seed coat development	1.37E-02
130	GO:0007389: pattern specification process	1.37E-02
131	GO:0030259: lipid glycosylation	1.37E-02
132	GO:0071704: organic substance metabolic process	1.37E-02
133	GO:0006782: protoporphyrinogen IX biosynthetic process	1.37E-02
134	GO:0009833: plant-type primary cell wall biogenesis	1.37E-02
135	GO:0006165: nucleoside diphosphate phosphorylation	1.37E-02
136	GO:0006228: UTP biosynthetic process	1.37E-02
137	GO:0051607: defense response to virus	1.38E-02
138	GO:0042742: defense response to bacterium	1.49E-02
139	GO:0042545: cell wall modification	1.86E-02
140	GO:0009813: flavonoid biosynthetic process	1.88E-02
141	GO:0015994: chlorophyll metabolic process	1.88E-02
142	GO:0070838: divalent metal ion transport	1.88E-02
143	GO:0010315: auxin efflux	1.88E-02
144	GO:0060416: response to growth hormone	1.88E-02
145	GO:0009772: photosynthetic electron transport in photosystem II	1.88E-02
146	GO:0009409: response to cold	1.91E-02
147	GO:0006631: fatty acid metabolic process	2.12E-02
148	GO:0010155: regulation of proton transport	2.41E-02
149	GO:0010267: production of ta-siRNAs involved in RNA interference	2.41E-02
150	GO:0018298: protein-chromophore linkage	2.41E-02
151	GO:0035196: production of miRNAs involved in gene silencing by miRNA	2.41E-02
152	GO:0006749: glutathione metabolic process	2.45E-02
153	GO:0009913: epidermal cell differentiation	2.45E-02
154	GO:0048229: gametophyte development	2.45E-02
155	GO:0007005: mitochondrion organization	2.45E-02
156	GO:0045454: cell redox homeostasis	2.66E-02
157	GO:0006457: protein folding	2.91E-02
158	GO:0046777: protein autophosphorylation	3.03E-02
159	GO:0009814: defense response, incompatible interaction	3.07E-02
160	GO:0009704: de-etiolation	3.07E-02
161	GO:0010583: response to cyclopentenone	3.07E-02
162	GO:0009411: response to UV	3.07E-02
163	GO:0033014: tetrapyrrole biosynthetic process	3.07E-02
164	GO:0010206: photosystem II repair	3.07E-02
165	GO:0006801: superoxide metabolic process	3.07E-02
166	GO:0009926: auxin polar transport	3.07E-02
167	GO:0010205: photoinhibition	3.07E-02
168	GO:0019252: starch biosynthetic process	3.08E-02
169	GO:0006414: translational elongation	3.11E-02
170	GO:0051604: protein maturation	3.74E-02
171	GO:0015693: magnesium ion transport	3.74E-02
172	GO:0043039: tRNA aminoacylation	3.74E-02
173	GO:0030245: cellulose catabolic process	3.74E-02
174	GO:0040007: growth	4.46E-02
175	GO:0010015: root morphogenesis	4.46E-02
176	GO:0045087: innate immune response	4.46E-02
177	GO:0009585: red, far-red light phototransduction	4.46E-02
178	GO:0080167: response to karrikin	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
2	GO:0031409: pigment binding	0.00E+00
3	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
4	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
5	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
6	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
7	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
8	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
9	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
10	GO:0005048: signal sequence binding	0.00E+00
11	GO:0005504: fatty acid binding	0.00E+00
12	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
13	GO:0045550: geranylgeranyl reductase activity	0.00E+00
14	GO:0046408: chlorophyll synthetase activity	0.00E+00
15	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
16	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
17	GO:0003735: structural constituent of ribosome	9.58E-07
18	GO:0004812: aminoacyl-tRNA ligase activity	5.35E-06
19	GO:0004765: shikimate kinase activity	8.45E-04
20	GO:0016209: antioxidant activity	8.45E-04
21	GO:0004659: prenyltransferase activity	8.45E-04
22	GO:0019843: rRNA binding	1.70E-03
23	GO:0004252: serine-type endopeptidase activity	2.32E-03
24	GO:0050377: UDP-glucose 4,6-dehydratase activity	2.35E-03
25	GO:0004824: lysine-tRNA ligase activity	2.35E-03
26	GO:0034256: chlorophyll(ide) b reductase activity	2.35E-03
27	GO:0004827: proline-tRNA ligase activity	2.35E-03
28	GO:0004418: hydroxymethylbilane synthase activity	2.35E-03
29	GO:0004828: serine-tRNA ligase activity	2.35E-03
30	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.35E-03
31	GO:0016851: magnesium chelatase activity	2.35E-03
32	GO:0004823: leucine-tRNA ligase activity	2.35E-03
33	GO:0045174: glutathione dehydrogenase (ascorbate) activity	2.35E-03
34	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	2.35E-03
35	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	2.35E-03
36	GO:0004831: tyrosine-tRNA ligase activity	2.35E-03
37	GO:0035250: UDP-galactosyltransferase activity	2.35E-03
38	GO:0010280: UDP-L-rhamnose synthase activity	2.35E-03
39	GO:0004362: glutathione-disulfide reductase activity	2.35E-03
40	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	2.35E-03
41	GO:0070402: NADPH binding	2.35E-03
42	GO:0008194: UDP-glycosyltransferase activity	2.35E-03
43	GO:0004817: cysteine-tRNA ligase activity	2.35E-03
44	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	2.95E-03
45	GO:0008236: serine-type peptidase activity	3.27E-03
46	GO:0008312: 7S RNA binding	3.99E-03
47	GO:0004853: uroporphyrinogen decarboxylase activity	5.42E-03
48	GO:0045485: omega-6 fatty acid desaturase activity	5.42E-03
49	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	5.42E-03
50	GO:0004392: heme oxygenase (decyclizing) activity	5.42E-03
51	GO:0045430: chalcone isomerase activity	5.42E-03
52	GO:0051920: peroxiredoxin activity	5.42E-03
53	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	5.42E-03
54	GO:0004826: phenylalanine-tRNA ligase activity	5.42E-03
55	GO:0004462: lactoylglutathione lyase activity	5.42E-03
56	GO:0000049: tRNA binding	6.55E-03
57	GO:0016887: ATPase activity	7.92E-03
58	GO:0008831: dTDP-4-dehydrorhamnose reductase activity	9.24E-03
59	GO:0008460: dTDP-glucose 4,6-dehydratase activity	9.24E-03
60	GO:0033897: ribonuclease T2 activity	9.24E-03
61	GO:0000774: adenyl-nucleotide exchange factor activity	9.24E-03
62	GO:0016872: intramolecular lyase activity	9.24E-03
63	GO:0032549: ribonucleoside binding	9.24E-03
64	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	1.37E-02
65	GO:0004550: nucleoside diphosphate kinase activity	1.37E-02
66	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.37E-02
67	GO:0003913: DNA photolyase activity	1.37E-02
68	GO:0071949: FAD binding	1.37E-02
69	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	1.37E-02
70	GO:0070569: uridylyltransferase activity	1.37E-02
71	GO:0048038: quinone binding	1.61E-02
72	GO:0016868: intramolecular transferase activity, phosphotransferases	1.88E-02
73	GO:0016987: sigma factor activity	1.88E-02
74	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.88E-02
75	GO:0003723: RNA binding	1.96E-02
76	GO:0015035: protein disulfide oxidoreductase activity	1.98E-02
77	GO:0003746: translation elongation factor activity	2.08E-02
78	GO:0016168: chlorophyll binding	2.41E-02
79	GO:0008173: RNA methyltransferase activity	2.45E-02
80	GO:0009055: electron carrier activity	2.74E-02
81	GO:0004525: ribonuclease III activity	3.07E-02
82	GO:0008810: cellulase activity	3.07E-02
83	GO:0051537: 2 iron, 2 sulfur cluster binding	3.38E-02
84	GO:0008565: protein transporter activity	3.38E-02
85	GO:0004784: superoxide dismutase activity	3.74E-02
86	GO:0043022: ribosome binding	3.74E-02
87	GO:0004869: cysteine-type endopeptidase inhibitor activity	3.74E-02
88	GO:0051087: chaperone binding	3.74E-02
89	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.13E-02
90	GO:0008266: poly(U) RNA binding	4.46E-02

Rank	GO Term	Adjusted P value
1	GO:0009782: photosystem I antenna complex	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
4	GO:0009507: chloroplast	4.59E-57
5	GO:0009570: chloroplast stroma	7.79E-45
6	GO:0009941: chloroplast envelope	4.71E-27
7	GO:0009535: chloroplast thylakoid membrane	2.39E-14
8	GO:0009579: thylakoid	2.19E-11
9	GO:0009534: chloroplast thylakoid	3.31E-10
10	GO:0005840: ribosome	1.91E-09
11	GO:0009840: chloroplastic endopeptidase Clp complex	8.73E-07
12	GO:0009295: nucleoid	5.31E-06
13	GO:0009543: chloroplast thylakoid lumen	1.39E-05
14	GO:0009532: plastid stroma	1.48E-05
15	GO:0030529: intracellular ribonucleoprotein complex	3.20E-05
16	GO:0042651: thylakoid membrane	1.94E-03
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.11E-03
18	GO:0009528: plastid inner membrane	2.35E-03
19	GO:0000311: plastid large ribosomal subunit	2.35E-03
20	GO:0009527: plastid outer membrane	2.35E-03
21	GO:0009526: plastid envelope	2.35E-03
22	GO:0005960: glycine cleavage complex	2.35E-03
23	GO:0044445: cytosolic part	2.35E-03
24	GO:0080085: signal recognition particle, chloroplast targeting	2.35E-03
25	GO:0048500: signal recognition particle	2.95E-03
26	GO:0010319: stromule	4.15E-03
27	GO:0031977: thylakoid lumen	4.64E-03
28	GO:0009536: plastid	8.62E-03
29	GO:0055028: cortical microtubule	9.24E-03
30	GO:0009523: photosystem II	1.29E-02
31	GO:0009508: plastid chromosome	1.88E-02
32	GO:0015934: large ribosomal subunit	1.90E-02
33	GO:0005622: intracellular	2.20E-02
34	GO:0031225: anchored component of membrane	2.45E-02
35	GO:0019013: viral nucleocapsid	3.03E-02
36	GO:0009706: chloroplast inner membrane	4.12E-02
37	GO:0005759: mitochondrial matrix	4.93E-02