Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G059039

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031118: rRNA pseudouridine synthesis0.00E+00
2GO:0070143: mitochondrial alanyl-tRNA aminoacylation0.00E+00
3GO:0006419: alanyl-tRNA aminoacylation0.00E+00
4GO:0032465: regulation of cytokinesis0.00E+00
5GO:0006396: RNA processing4.23E-06
6GO:0016572: histone phosphorylation2.65E-05
7GO:0007059: chromosome segregation7.09E-05
8GO:0001522: pseudouridine synthesis7.09E-05
9GO:0048574: long-day photoperiodism, flowering7.09E-05
10GO:0009909: regulation of flower development1.55E-04
11GO:0043987: histone H3-S10 phosphorylation1.80E-04
12GO:0010638: positive regulation of organelle organization3.18E-04
13GO:0048235: pollen sperm cell differentiation3.18E-04
14GO:0001510: RNA methylation3.93E-04
15GO:0006075: (1->3)-beta-D-glucan biosynthetic process6.50E-04
16GO:0033044: regulation of chromosome organization6.50E-04
17GO:0010050: vegetative phase change8.42E-04
18GO:0007267: cell-cell signaling8.42E-04
19GO:0043039: tRNA aminoacylation1.27E-03
20GO:0010073: meristem maintenance1.27E-03
21GO:0010074: maintenance of meristem identity1.27E-03
22GO:0051604: protein maturation1.27E-03
23GO:0009451: RNA modification1.74E-03
24GO:0006338: chromatin remodeling1.74E-03
25GO:0006499: N-terminal protein myristoylation1.99E-03
26GO:0006312: mitotic recombination1.99E-03
27GO:0006479: protein methylation1.99E-03
28GO:0009616: virus induced gene silencing1.99E-03
29GO:0019915: lipid storage2.24E-03
30GO:0009165: nucleotide biosynthetic process2.50E-03
31GO:0031048: chromatin silencing by small RNA2.78E-03
32GO:0006406: mRNA export from nucleus2.78E-03
33GO:0010014: meristem initiation3.08E-03
34GO:0007131: reciprocal meiotic recombination3.08E-03
35GO:0010197: polar nucleus fusion3.08E-03
36GO:0010162: seed dormancy process3.08E-03
37GO:0009855: determination of bilateral symmetry3.08E-03
38GO:0050826: response to freezing3.40E-03
39GO:0006094: gluconeogenesis3.72E-03
40GO:0034968: histone lysine methylation3.72E-03
41GO:0006281: DNA repair3.79E-03
42GO:0010267: production of ta-siRNAs involved in RNA interference4.05E-03
43GO:0035196: production of miRNAs involved in gene silencing by miRNA4.05E-03
44GO:0009966: regulation of signal transduction4.05E-03
45GO:0010182: sugar mediated signaling pathway4.75E-03
46GO:0010090: trichome morphogenesis4.75E-03
47GO:0000278: mitotic cell cycle5.09E-03
48GO:0006346: methylation-dependent chromatin silencing5.09E-03
49GO:0042254: ribosome biogenesis5.84E-03
50GO:0009845: seed germination5.84E-03
51GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation6.23E-03
52GO:0000226: microtubule cytoskeleton organization7.03E-03
53GO:0009560: embryo sac egg cell differentiation7.03E-03
54GO:0007049: cell cycle7.44E-03
55GO:0009086: methionine biosynthetic process8.29E-03
56GO:0051567: histone H3-K9 methylation1.06E-02
57GO:0009640: photomorphogenesis1.10E-02
58GO:0006306: DNA methylation1.15E-02
59GO:0000398: mRNA splicing, via spliceosome1.25E-02
60GO:0051301: cell division1.35E-02
61GO:0006952: defense response1.85E-02
62GO:0016567: protein ubiquitination3.38E-02
63GO:0006096: glycolytic process3.60E-02
64GO:0009414: response to water deprivation4.62E-02
RankGO TermAdjusted P value
1GO:0004813: alanine-tRNA ligase activity0.00E+00
2GO:0030515: snoRNA binding2.61E-06
3GO:0035175: histone kinase activity (H3-S10 specific)1.80E-04
4GO:0003676: nucleic acid binding3.62E-04
5GO:0016876: ligase activity, forming aminoacyl-tRNA and related compounds6.50E-04
6GO:0003843: 1,3-beta-D-glucan synthase activity6.50E-04
7GO:0008173: RNA methyltransferase activity8.42E-04
8GO:0009982: pseudouridine synthase activity1.74E-03
9GO:0000049: tRNA binding1.74E-03
10GO:0008375: acetylglucosaminyltransferase activity3.08E-03
11GO:0005200: structural constituent of cytoskeleton4.40E-03
12GO:0003723: RNA binding1.08E-02
13GO:0004721: phosphoprotein phosphatase activity1.68E-02
14GO:0004674: protein serine/threonine kinase activity2.15E-02
15GO:0016772: transferase activity, transferring phosphorus-containing groups4.29E-02
RankGO TermAdjusted P value
1GO:0000812: Swr1 complex0.00E+00
2GO:0019013: viral nucleocapsid4.00E-06
3GO:0035267: NuA4 histone acetyltransferase complex7.09E-05
4GO:0072588: box H/ACA RNP complex7.09E-05
5GO:0005730: nucleolus2.03E-04
6GO:0000775: chromosome, centromeric region3.18E-04
7GO:0000148: 1,3-beta-D-glucan synthase complex6.50E-04
8GO:0005732: small nucleolar ribonucleoprotein complex6.50E-04
9GO:0031011: Ino80 complex8.42E-04
10GO:0030529: intracellular ribonucleoprotein complex1.03E-03
11GO:0015030: Cajal body1.05E-03
12GO:0016604: nuclear body1.27E-03
13GO:0005819: spindle5.09E-03