Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G058584

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071486: cellular response to high light intensity0.00E+00
2GO:0043043: peptide biosynthetic process0.00E+00
3GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA0.00E+00
4GO:0009234: menaquinone biosynthetic process0.00E+00
5GO:0006436: tryptophanyl-tRNA aminoacylation0.00E+00
6GO:0006412: translation3.34E-11
7GO:0045036: protein targeting to chloroplast2.12E-07
8GO:0010027: thylakoid membrane organization6.73E-07
9GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.51E-06
10GO:0010236: plastoquinone biosynthetic process2.73E-06
11GO:0032544: plastid translation2.73E-06
12GO:0042372: phylloquinone biosynthetic process2.73E-06
13GO:0015995: chlorophyll biosynthetic process5.10E-05
14GO:0010207: photosystem II assembly1.01E-04
15GO:0009069: serine family amino acid metabolic process2.62E-04
16GO:0019676: ammonia assimilation cycle2.62E-04
17GO:0006430: lysyl-tRNA aminoacylation2.62E-04
18GO:0008361: regulation of cell size2.62E-04
19GO:0006434: seryl-tRNA aminoacylation2.62E-04
20GO:0006573: valine metabolic process2.62E-04
21GO:0006282: regulation of DNA repair2.62E-04
22GO:0006098: pentose-phosphate shunt3.09E-04
23GO:0006354: DNA-templated transcription, elongation3.27E-04
24GO:0016226: iron-sulfur cluster assembly3.37E-04
25GO:0006779: porphyrin-containing compound biosynthetic process4.00E-04
26GO:0006418: tRNA aminoacylation for protein translation4.44E-04
27GO:0048653: anther development6.18E-04
28GO:0019464: glycine decarboxylation via glycine cleavage system6.18E-04
29GO:0006364: rRNA processing7.93E-04
30GO:0034599: cellular response to oxidative stress1.06E-03
31GO:0007389: pattern specification process1.55E-03
32GO:0009793: embryo development ending in seed dormancy1.92E-03
33GO:0009902: chloroplast relocation2.07E-03
34GO:0007568: aging2.08E-03
35GO:0010189: vitamin E biosynthetic process2.08E-03
36GO:0000096: sulfur amino acid metabolic process2.08E-03
37GO:0009772: photosynthetic electron transport in photosystem II2.08E-03
38GO:0007005: mitochondrion organization2.65E-03
39GO:0006542: glutamine biosynthetic process2.65E-03
40GO:0009814: defense response, incompatible interaction3.31E-03
41GO:0006801: superoxide metabolic process3.31E-03
42GO:0009926: auxin polar transport3.31E-03
43GO:0042742: defense response to bacterium3.91E-03
44GO:0048481: plant ovule development4.06E-03
45GO:0009658: chloroplast organization4.33E-03
46GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.77E-03
47GO:0040007: growth4.77E-03
48GO:0010015: root morphogenesis4.77E-03
49GO:0048868: pollen tube development4.77E-03
50GO:0009407: toxin catabolic process5.55E-03
51GO:0009832: plant-type cell wall biogenesis5.55E-03
52GO:0010228: vegetative to reproductive phase transition of meristem6.13E-03
53GO:0016556: mRNA modification6.38E-03
54GO:0009697: salicylic acid biosynthetic process6.38E-03
55GO:0010264: myo-inositol hexakisphosphate biosynthetic process7.27E-03
56GO:0006546: glycine catabolic process7.27E-03
57GO:0009409: response to cold8.02E-03
58GO:0042793: transcription from plastid promoter9.13E-03
59GO:0007030: Golgi organization1.01E-02
60GO:0015996: chlorophyll catabolic process1.01E-02
61GO:0010075: regulation of meristem growth1.01E-02
62GO:0006636: unsaturated fatty acid biosynthetic process1.01E-02
63GO:0006833: water transport1.11E-02
64GO:0006972: hyperosmotic response1.11E-02
65GO:0042545: cell wall modification1.11E-02
66GO:0009750: response to fructose1.11E-02
67GO:0019684: photosynthesis, light reaction1.22E-02
68GO:0030154: cell differentiation1.22E-02
69GO:0009749: response to glucose1.22E-02
70GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione1.33E-02
71GO:0009664: plant-type cell wall organization1.33E-02
72GO:0010155: regulation of proton transport1.33E-02
73GO:0010103: stomatal complex morphogenesis1.45E-02
74GO:0006807: nitrogen compound metabolic process1.56E-02
75GO:0010224: response to UV-B1.56E-02
76GO:0035304: regulation of protein dephosphorylation1.56E-02
77GO:0009773: photosynthetic electron transport in photosystem I1.56E-02
78GO:0009817: defense response to fungus, incompatible interaction1.68E-02
79GO:0042254: ribosome biogenesis1.94E-02
80GO:0009735: response to cytokinin2.48E-02
81GO:0019344: cysteine biosynthetic process2.76E-02
82GO:0016117: carotenoid biosynthetic process2.76E-02
83GO:0009637: response to blue light2.76E-02
84GO:0009790: embryo development2.91E-02
85GO:0010114: response to red light3.06E-02
86GO:0010218: response to far red light3.37E-02
87GO:0006414: translational elongation4.03E-02
88GO:0009744: response to sucrose4.03E-02
89GO:0008652: cellular amino acid biosynthetic process4.55E-02
90GO:0009644: response to high light intensity4.72E-02
RankGO TermAdjusted P value
1GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
2GO:0004479: methionyl-tRNA formyltransferase activity0.00E+00
3GO:0004830: tryptophan-tRNA ligase activity0.00E+00
4GO:0030267: glyoxylate reductase (NADP) activity0.00E+00
5GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
6GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
7GO:0003735: structural constituent of ribosome1.09E-09
8GO:0016851: magnesium chelatase activity2.62E-04
9GO:0004828: serine-tRNA ligase activity2.62E-04
10GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity2.62E-04
11GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity2.62E-04
12GO:0004824: lysine-tRNA ligase activity2.62E-04
13GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.62E-04
14GO:0004812: aminoacyl-tRNA ligase activity5.25E-04
15GO:0051920: peroxiredoxin activity6.18E-04
16GO:0016742: hydroxymethyl-, formyl- and related transferase activity6.18E-04
17GO:0016209: antioxidant activity1.55E-03
18GO:0004659: prenyltransferase activity1.55E-03
19GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity2.08E-03
20GO:0004356: glutamate-ammonia ligase activity2.65E-03
21GO:0004784: superoxide dismutase activity4.02E-03
22GO:0008312: 7S RNA binding4.02E-03
23GO:0003723: RNA binding8.81E-03
24GO:0008081: phosphoric diester hydrolase activity1.01E-02
25GO:0016874: ligase activity1.45E-02
26GO:0008236: serine-type peptidase activity2.76E-02
27GO:0003746: translation elongation factor activity3.22E-02
28GO:0017111: nucleoside-triphosphatase activity3.82E-02
RankGO TermAdjusted P value
1GO:0009570: chloroplast stroma7.73E-20
2GO:0009507: chloroplast9.02E-18
3GO:0005840: ribosome2.91E-12
4GO:0009941: chloroplast envelope2.21E-11
5GO:0009579: thylakoid4.27E-09
6GO:0030529: intracellular ribonucleoprotein complex3.48E-07
7GO:0005622: intracellular6.13E-05
8GO:0000311: plastid large ribosomal subunit2.62E-04
9GO:0005960: glycine cleavage complex2.62E-04
10GO:0009840: chloroplastic endopeptidase Clp complex2.08E-03
11GO:0009535: chloroplast thylakoid membrane2.72E-03
12GO:0048500: signal recognition particle3.31E-03
13GO:0015935: small ribosomal subunit3.55E-03
14GO:0009532: plastid stroma4.02E-03
15GO:0009534: chloroplast thylakoid5.80E-03
16GO:0009295: nucleoid7.27E-03
17GO:0009543: chloroplast thylakoid lumen9.13E-03
18GO:0010319: stromule3.06E-02
19GO:0015934: large ribosomal subunit3.06E-02
20GO:0031977: thylakoid lumen3.22E-02
21GO:0048046: apoplast3.79E-02