co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G058070

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
2	GO:0042550: photosystem I stabilization	0.00E+00
3	GO:2000505: regulation of energy homeostasis	0.00E+00
4	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	0.00E+00
5	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
6	GO:0042221: response to chemical	0.00E+00
7	GO:0010028: xanthophyll cycle	0.00E+00
8	GO:0019676: ammonia assimilation cycle	0.00E+00
9	GO:0035436: triose phosphate transmembrane transport	0.00E+00
10	GO:0015714: phosphoenolpyruvate transport	0.00E+00
11	GO:0030243: cellulose metabolic process	0.00E+00
12	GO:0030388: fructose 1,6-bisphosphate metabolic process	0.00E+00
13	GO:0055070: copper ion homeostasis	0.00E+00
14	GO:0051188: cofactor biosynthetic process	0.00E+00
15	GO:0015979: photosynthesis	4.07E-21
16	GO:0015995: chlorophyll biosynthetic process	5.29E-15
17	GO:0010207: photosystem II assembly	5.35E-14
18	GO:0006098: pentose-phosphate shunt	9.14E-14
19	GO:0009773: photosynthetic electron transport in photosystem I	1.12E-13
20	GO:0016117: carotenoid biosynthetic process	3.63E-10
21	GO:0006364: rRNA processing	1.26E-09
22	GO:0009637: response to blue light	1.31E-08
23	GO:0010114: response to red light	2.29E-08
24	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.35E-08
25	GO:0010218: response to far red light	3.84E-08
26	GO:0010027: thylakoid membrane organization	1.35E-07
27	GO:0009902: chloroplast relocation	1.35E-07
28	GO:0043085: positive regulation of catalytic activity	3.24E-07
29	GO:0000023: maltose metabolic process	1.19E-06
30	GO:0009765: photosynthesis, light harvesting	2.28E-06
31	GO:0019252: starch biosynthetic process	2.49E-06
32	GO:0009772: photosynthetic electron transport in photosystem II	2.53E-06
33	GO:0070838: divalent metal ion transport	2.53E-06
34	GO:0080167: response to karrikin	6.69E-06
35	GO:0009106: lipoate metabolic process	1.07E-05
36	GO:0030003: cellular cation homeostasis	1.07E-05
37	GO:0006766: vitamin metabolic process	1.07E-05
38	GO:0009108: coenzyme biosynthetic process	1.07E-05
39	GO:0010155: regulation of proton transport	1.72E-05
40	GO:0018298: protein-chromophore linkage	1.72E-05
41	GO:0010103: stomatal complex morphogenesis	2.22E-05
42	GO:0009072: aromatic amino acid family metabolic process	2.89E-05
43	GO:0006814: sodium ion transport	6.15E-05
44	GO:0006546: glycine catabolic process	8.41E-05
45	GO:0019216: regulation of lipid metabolic process	1.08E-04
46	GO:0009595: detection of biotic stimulus	1.08E-04
47	GO:0010196: nonphotochemical quenching	1.08E-04
48	GO:0009767: photosynthetic electron transport chain	1.43E-04
49	GO:0019344: cysteine biosynthetic process	1.45E-04
50	GO:0019761: glucosinolate biosynthetic process	1.67E-04
51	GO:0006636: unsaturated fatty acid biosynthetic process	1.82E-04
52	GO:0043900: regulation of multi-organism process	1.92E-04
53	GO:0019748: secondary metabolic process	1.92E-04
54	GO:0000096: sulfur amino acid metabolic process	1.92E-04
55	GO:0009411: response to UV	4.35E-04
56	GO:0010206: photosystem II repair	4.35E-04
57	GO:0046777: protein autophosphorylation	4.58E-04
58	GO:0009695: jasmonic acid biosynthetic process	5.31E-04
59	GO:0015986: ATP synthesis coupled proton transport	5.31E-04
60	GO:0010310: regulation of hydrogen peroxide metabolic process	5.92E-04
61	GO:0022900: electron transport chain	6.15E-04
62	GO:0015977: carbon fixation	7.74E-04
63	GO:0016556: mRNA modification	1.22E-03
64	GO:0009697: salicylic acid biosynthetic process	1.22E-03
65	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.48E-03
66	GO:0044272: sulfur compound biosynthetic process	1.49E-03
67	GO:0006875: cellular metal ion homeostasis	1.49E-03
68	GO:0009416: response to light stimulus	1.61E-03
69	GO:0055114: oxidation-reduction process	1.67E-03
70	GO:0031408: oxylipin biosynthetic process	2.06E-03
71	GO:0042793: transcription from plastid promoter	2.06E-03
72	GO:0016024: CDP-diacylglycerol biosynthetic process	2.46E-03
73	GO:0022904: respiratory electron transport chain	2.46E-03
74	GO:0051289: protein homotetramerization	2.46E-03
75	GO:0019760: glucosinolate metabolic process	2.46E-03
76	GO:0006733: oxidoreduction coenzyme metabolic process	2.46E-03
77	GO:0006833: water transport	2.73E-03
78	GO:0009750: response to fructose	2.73E-03
79	GO:0009744: response to sucrose	2.75E-03
80	GO:0009749: response to glucose	3.13E-03
81	GO:0009657: plastid organization	3.13E-03
82	GO:0019684: photosynthesis, light reaction	3.13E-03
83	GO:0009624: response to nematode	3.45E-03
84	GO:0009966: regulation of signal transduction	3.57E-03
85	GO:0006782: protoporphyrinogen IX biosynthetic process	3.63E-03
86	GO:0051260: protein homooligomerization	3.63E-03
87	GO:0009117: nucleotide metabolic process	3.63E-03
88	GO:0045037: protein import into chloroplast stroma	3.63E-03
89	GO:0050821: protein stabilization	3.63E-03
90	GO:0016485: protein processing	3.63E-03
91	GO:0009644: response to high light intensity	3.71E-03
92	GO:0010200: response to chitin	4.02E-03
93	GO:0006612: protein targeting to membrane	4.02E-03
94	GO:0010363: regulation of plant-type hypersensitive response	4.51E-03
95	GO:0035304: regulation of protein dephosphorylation	4.51E-03
96	GO:0006096: glycolytic process	4.65E-03
97	GO:0009813: flavonoid biosynthetic process	4.96E-03
98	GO:0034755: iron ion transmembrane transport	4.96E-03
99	GO:0007568: aging	4.96E-03
100	GO:0015994: chlorophyll metabolic process	4.96E-03
101	GO:0070084: protein initiator methionine removal	4.96E-03
102	GO:0006796: phosphate-containing compound metabolic process	4.96E-03
103	GO:0031348: negative regulation of defense response	5.01E-03
104	GO:0009867: jasmonic acid mediated signaling pathway	5.01E-03
105	GO:0009409: response to cold	5.56E-03
106	GO:0046688: response to copper ion	6.40E-03
107	GO:0006542: glutamine biosynthetic process	6.40E-03
108	GO:0017148: negative regulation of translation	6.40E-03
109	GO:0006783: heme biosynthetic process	6.40E-03
110	GO:0000165: MAPK cascade	7.37E-03
111	GO:0000413: protein peptidyl-prolyl isomerization	7.37E-03
112	GO:0042742: defense response to bacterium	7.92E-03
113	GO:0034660: ncRNA metabolic process	7.99E-03
114	GO:0009987: cellular process	7.99E-03
115	GO:0033014: tetrapyrrole biosynthetic process	7.99E-03
116	GO:0005985: sucrose metabolic process	9.71E-03
117	GO:0046939: nucleotide phosphorylation	9.71E-03
118	GO:0009832: plant-type cell wall biogenesis	1.35E-02
119	GO:0009658: chloroplast organization	1.55E-02
120	GO:0006354: DNA-templated transcription, elongation	1.55E-02
121	GO:0006006: glucose metabolic process	1.55E-02
122	GO:0006754: ATP biosynthetic process	1.55E-02
123	GO:0006779: porphyrin-containing compound biosynthetic process	1.77E-02
124	GO:0008652: cellular amino acid biosynthetic process	2.08E-02
125	GO:0006108: malate metabolic process	2.23E-02
126	GO:0006655: phosphatidylglycerol biosynthetic process	2.23E-02
127	GO:0007030: Golgi organization	2.48E-02
128	GO:0016049: cell growth	2.73E-02
129	GO:0006972: hyperosmotic response	2.73E-02
130	GO:0030154: cell differentiation	3.00E-02
131	GO:0015992: proton transport	3.00E-02
132	GO:0016126: sterol biosynthetic process	3.00E-02
133	GO:0006631: fatty acid metabolic process	3.00E-02
134	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	3.27E-02
135	GO:0045893: positive regulation of transcription, DNA-templated	3.39E-02
136	GO:0050832: defense response to fungus	3.54E-02
137	GO:0010193: response to ozone	3.55E-02
138	GO:0006807: nitrogen compound metabolic process	3.84E-02
139	GO:0010224: response to UV-B	3.84E-02
140	GO:0006139: nucleobase-containing compound metabolic process	3.84E-02
141	GO:0009817: defense response to fungus, incompatible interaction	4.14E-02

Rank	GO Term	Adjusted P value
1	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
2	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
3	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
4	GO:0004802: transketolase activity	0.00E+00
5	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
6	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
7	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
8	GO:0051738: xanthophyll binding	0.00E+00
9	GO:0015131: oxaloacetate transmembrane transporter activity	0.00E+00
10	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	0.00E+00
11	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
12	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
13	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
14	GO:0009496: plastoquinol--plastocyanin reductase activity	0.00E+00
15	GO:0045550: geranylgeranyl reductase activity	0.00E+00
16	GO:0016168: chlorophyll binding	2.01E-10
17	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.61E-07
18	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	8.41E-05
19	GO:0004332: fructose-bisphosphate aldolase activity	1.08E-04
20	GO:0016984: ribulose-bisphosphate carboxylase activity	1.08E-04
21	GO:0009055: electron carrier activity	1.56E-04
22	GO:0051537: 2 iron, 2 sulfur cluster binding	5.31E-04
23	GO:0008883: glutamyl-tRNA reductase activity	6.44E-04
24	GO:0016679: oxidoreductase activity, acting on diphenols and related substances as donors	6.44E-04
25	GO:0004618: phosphoglycerate kinase activity	6.44E-04
26	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.44E-04
27	GO:0015088: copper uptake transmembrane transporter activity	6.44E-04
28	GO:0015140: malate transmembrane transporter activity	6.44E-04
29	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.49E-03
30	GO:0045430: chalcone isomerase activity	1.49E-03
31	GO:0004605: phosphatidate cytidylyltransferase activity	1.49E-03
32	GO:0051920: peroxiredoxin activity	1.49E-03
33	GO:0005215: transporter activity	1.89E-03
34	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	2.46E-03
35	GO:0016872: intramolecular lyase activity	2.46E-03
36	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.63E-03
37	GO:0016209: antioxidant activity	3.63E-03
38	GO:0071949: FAD binding	3.63E-03
39	GO:0070006: metalloaminopeptidase activity	4.96E-03
40	GO:0005381: iron ion transmembrane transporter activity	4.96E-03
41	GO:0004470: malic enzyme activity	4.96E-03
42	GO:0004017: adenylate kinase activity	4.96E-03
43	GO:0008235: metalloexopeptidase activity	6.40E-03
44	GO:0004356: glutamate-ammonia ligase activity	6.40E-03
45	GO:0051287: NAD binding	6.90E-03
46	GO:0051536: iron-sulfur cluster binding	7.30E-03
47	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	7.99E-03
48	GO:0019201: nucleotide kinase activity	7.99E-03
49	GO:0008121: ubiquinol-cytochrome-c reductase activity	7.99E-03
50	GO:0019205: nucleobase-containing compound kinase activity	7.99E-03
51	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.73E-03
52	GO:0016776: phosphotransferase activity, phosphate group as acceptor	1.15E-02
53	GO:0004427: inorganic diphosphatase activity	1.15E-02
54	GO:0042578: phosphoric ester hydrolase activity	1.15E-02
55	GO:0008266: poly(U) RNA binding	1.15E-02
56	GO:0004177: aminopeptidase activity	1.35E-02
57	GO:0046914: transition metal ion binding	1.55E-02
58	GO:0016491: oxidoreductase activity	1.66E-02
59	GO:0048037: cofactor binding	1.77E-02
60	GO:0003690: double-stranded DNA binding	1.77E-02
61	GO:0050661: NADP binding	1.86E-02
62	GO:0042803: protein homodimerization activity	2.44E-02
63	GO:0046961: proton-transporting ATPase activity, rotational mechanism	2.48E-02
64	GO:0046872: metal ion binding	2.65E-02
65	GO:0004713: protein tyrosine kinase activity	2.73E-02
66	GO:0016829: lyase activity	2.89E-02
67	GO:0008080: N-acetyltransferase activity	3.00E-02
68	GO:0015035: protein disulfide oxidoreductase activity	3.25E-02
69	GO:0005506: iron ion binding	3.98E-02
70	GO:0015078: hydrogen ion transmembrane transporter activity	4.45E-02
71	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0009512: cytochrome b6f complex	0.00E+00
2	GO:0030093: chloroplast photosystem I	0.00E+00
3	GO:0009507: chloroplast	7.15E-35
4	GO:0009535: chloroplast thylakoid membrane	7.08E-31
5	GO:0009941: chloroplast envelope	3.21E-27
6	GO:0009579: thylakoid	1.33E-26
7	GO:0009522: photosystem I	1.06E-17
8	GO:0010287: plastoglobule	8.41E-12
9	GO:0009534: chloroplast thylakoid	8.41E-12
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.77E-10
11	GO:0031977: thylakoid lumen	9.40E-10
12	GO:0009543: chloroplast thylakoid lumen	1.60E-09
13	GO:0009538: photosystem I reaction center	2.25E-09
14	GO:0009570: chloroplast stroma	5.61E-08
15	GO:0016020: membrane	1.68E-07
16	GO:0009523: photosystem II	2.35E-07
17	GO:0042651: thylakoid membrane	1.43E-04
18	GO:0009508: plastid chromosome	1.92E-04
19	GO:0048046: apoplast	6.27E-04
20	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	6.44E-04
21	GO:0042406: extrinsic component of endoplasmic reticulum membrane	6.44E-04
22	GO:0009517: PSII associated light-harvesting complex II	6.44E-04
23	GO:0009706: chloroplast inner membrane	7.00E-04
24	GO:0009295: nucleoid	1.48E-03
25	GO:0009533: chloroplast stromal thylakoid	1.49E-03
26	GO:0010319: stromule	1.69E-03
27	GO:0019898: extrinsic component of membrane	6.40E-03
28	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	7.99E-03
29	GO:0009654: photosystem II oxygen evolving complex	7.99E-03
30	GO:0009536: plastid	1.03E-02