co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G057554

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042221: response to chemical	0.00E+00
2	GO:0010028: xanthophyll cycle	0.00E+00
3	GO:0030243: cellulose metabolic process	0.00E+00
4	GO:0030388: fructose 1,6-bisphosphate metabolic process	0.00E+00
5	GO:0055070: copper ion homeostasis	0.00E+00
6	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
7	GO:0042550: photosystem I stabilization	0.00E+00
8	GO:2000505: regulation of energy homeostasis	0.00E+00
9	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	0.00E+00
10	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
11	GO:0015979: photosynthesis	8.51E-16
12	GO:0009773: photosynthetic electron transport in photosystem I	2.57E-12
13	GO:0010207: photosystem II assembly	1.29E-11
14	GO:0010027: thylakoid membrane organization	7.80E-11
15	GO:0043085: positive regulation of catalytic activity	1.57E-10
16	GO:0006098: pentose-phosphate shunt	2.99E-10
17	GO:0019252: starch biosynthetic process	2.36E-09
18	GO:0016117: carotenoid biosynthetic process	4.65E-09
19	GO:0000023: maltose metabolic process	1.75E-08
20	GO:0015995: chlorophyll biosynthetic process	6.58E-08
21	GO:0006364: rRNA processing	7.88E-08
22	GO:0046777: protein autophosphorylation	4.70E-07
23	GO:0070838: divalent metal ion transport	1.52E-06
24	GO:0030003: cellular cation homeostasis	6.52E-06
25	GO:0010155: regulation of proton transport	9.39E-06
26	GO:0010103: stomatal complex morphogenesis	1.22E-05
27	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.61E-05
28	GO:0006814: sodium ion transport	3.86E-05
29	GO:0009902: chloroplast relocation	4.38E-05
30	GO:0010196: nonphotochemical quenching	7.69E-05
31	GO:0019761: glucosinolate biosynthetic process	9.73E-05
32	GO:0000096: sulfur amino acid metabolic process	1.38E-04
33	GO:0009772: photosynthetic electron transport in photosystem II	1.38E-04
34	GO:0009657: plastid organization	1.80E-04
35	GO:0080167: response to karrikin	2.79E-04
36	GO:0006766: vitamin metabolic process	3.20E-04
37	GO:0009411: response to UV	3.20E-04
38	GO:0009108: coenzyme biosynthetic process	3.20E-04
39	GO:0010206: photosystem II repair	3.20E-04
40	GO:0034660: ncRNA metabolic process	3.20E-04
41	GO:0009106: lipoate metabolic process	3.20E-04
42	GO:0015986: ATP synthesis coupled proton transport	3.56E-04
43	GO:0019676: ammonia assimilation cycle	5.25E-04
44	GO:0071482: cellular response to light stimulus	5.25E-04
45	GO:0009072: aromatic amino acid family metabolic process	5.74E-04
46	GO:0016556: mRNA modification	9.08E-04
47	GO:0006546: glycine catabolic process	1.11E-03
48	GO:0006875: cellular metal ion homeostasis	1.22E-03
49	GO:0044272: sulfur compound biosynthetic process	1.22E-03
50	GO:0042793: transcription from plastid promoter	1.56E-03
51	GO:0006636: unsaturated fatty acid biosynthetic process	1.80E-03
52	GO:0022904: respiratory electron transport chain	2.03E-03
53	GO:0051289: protein homotetramerization	2.03E-03
54	GO:0019760: glucosinolate metabolic process	2.03E-03
55	GO:0019684: photosynthesis, light reaction	2.35E-03
56	GO:0009624: response to nematode	2.37E-03
57	GO:0009966: regulation of signal transduction	2.65E-03
58	GO:0022900: electron transport chain	2.72E-03
59	GO:0045454: cell redox homeostasis	2.80E-03
60	GO:0009595: detection of biotic stimulus	2.96E-03
61	GO:0045037: protein import into chloroplast stroma	2.96E-03
62	GO:0015976: carbon utilization	2.96E-03
63	GO:0006014: D-ribose metabolic process	2.96E-03
64	GO:0050821: protein stabilization	2.96E-03
65	GO:0016485: protein processing	2.96E-03
66	GO:0019216: regulation of lipid metabolic process	2.96E-03
67	GO:0051260: protein homooligomerization	2.96E-03
68	GO:0009695: jasmonic acid biosynthetic process	3.74E-03
69	GO:0043900: regulation of multi-organism process	4.05E-03
70	GO:0034755: iron ion transmembrane transport	4.05E-03
71	GO:0019748: secondary metabolic process	4.05E-03
72	GO:0015994: chlorophyll metabolic process	4.05E-03
73	GO:0070084: protein initiator methionine removal	4.05E-03
74	GO:0006796: phosphate-containing compound metabolic process	4.05E-03
75	GO:0009813: flavonoid biosynthetic process	4.05E-03
76	GO:0006568: tryptophan metabolic process	5.23E-03
77	GO:0046688: response to copper ion	5.23E-03
78	GO:0017148: negative regulation of translation	5.23E-03
79	GO:0000413: protein peptidyl-prolyl isomerization	5.49E-03
80	GO:0009987: cellular process	6.52E-03
81	GO:0010205: photoinhibition	6.52E-03
82	GO:0006662: glycerol ether metabolic process	7.06E-03
83	GO:0019344: cysteine biosynthetic process	7.63E-03
84	GO:0009637: response to blue light	7.63E-03
85	GO:0046939: nucleotide phosphorylation	7.91E-03
86	GO:0010310: regulation of hydrogen peroxide metabolic process	7.91E-03
87	GO:0005985: sucrose metabolic process	7.91E-03
88	GO:0010114: response to red light	8.84E-03
89	GO:0000162: tryptophan biosynthetic process	9.41E-03
90	GO:0010218: response to far red light	1.01E-02
91	GO:0005983: starch catabolic process	1.10E-02
92	GO:0009832: plant-type cell wall biogenesis	1.10E-02
93	GO:0009658: chloroplast organization	1.16E-02
94	GO:0006006: glucose metabolic process	1.26E-02
95	GO:0009697: salicylic acid biosynthetic process	1.26E-02
96	GO:0006754: ATP biosynthetic process	1.26E-02
97	GO:0006354: DNA-templated transcription, elongation	1.26E-02
98	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.44E-02
99	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.44E-02
100	GO:0008652: cellular amino acid biosynthetic process	1.55E-02
101	GO:0046854: phosphatidylinositol phosphorylation	1.62E-02
102	GO:0042742: defense response to bacterium	1.75E-02
103	GO:0006108: malate metabolic process	1.82E-02
104	GO:0006655: phosphatidylglycerol biosynthetic process	1.82E-02
105	GO:0009767: photosynthetic electron transport chain	1.82E-02
106	GO:0031408: oxylipin biosynthetic process	1.82E-02
107	GO:0006833: water transport	2.22E-02
108	GO:0009750: response to fructose	2.22E-02
109	GO:0016049: cell growth	2.22E-02
110	GO:0006631: fatty acid metabolic process	2.44E-02
111	GO:0030154: cell differentiation	2.44E-02
112	GO:0015992: proton transport	2.44E-02
113	GO:0016126: sterol biosynthetic process	2.44E-02
114	GO:0055114: oxidation-reduction process	2.50E-02
115	GO:0045893: positive regulation of transcription, DNA-templated	2.54E-02
116	GO:0009664: plant-type cell wall organization	2.66E-02
117	GO:0010193: response to ozone	2.89E-02
118	GO:0006612: protein targeting to membrane	2.89E-02
119	GO:0010200: response to chitin	2.89E-02
120	GO:0010363: regulation of plant-type hypersensitive response	3.12E-02
121	GO:0010224: response to UV-B	3.12E-02
122	GO:0035304: regulation of protein dephosphorylation	3.12E-02
123	GO:0006139: nucleobase-containing compound metabolic process	3.12E-02
124	GO:0009416: response to light stimulus	3.13E-02
125	GO:0009867: jasmonic acid mediated signaling pathway	3.37E-02
126	GO:0009817: defense response to fungus, incompatible interaction	3.37E-02
127	GO:0031348: negative regulation of defense response	3.37E-02
128	GO:0000165: MAPK cascade	4.40E-02
129	GO:0030163: protein catabolic process	4.68E-02
130	GO:0009735: response to cytokinin	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0019200: carbohydrate kinase activity	0.00E+00
3	GO:0051738: xanthophyll binding	0.00E+00
4	GO:0015131: oxaloacetate transmembrane transporter activity	0.00E+00
5	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
6	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
7	GO:0009496: plastoquinol--plastocyanin reductase activity	0.00E+00
8	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
9	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
10	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
11	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
12	GO:0004802: transketolase activity	0.00E+00
13	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
14	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.54E-07
15	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	9.62E-06
16	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	5.33E-05
17	GO:0016168: chlorophyll binding	2.17E-04
18	GO:0009055: electron carrier activity	2.90E-04
19	GO:0016679: oxidoreductase activity, acting on diphenols and related substances as donors	5.25E-04
20	GO:0004618: phosphoglycerate kinase activity	5.25E-04
21	GO:0015088: copper uptake transmembrane transporter activity	5.25E-04
22	GO:0015140: malate transmembrane transporter activity	5.25E-04
23	GO:0015035: protein disulfide oxidoreductase activity	6.68E-04
24	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.22E-03
25	GO:0045430: chalcone isomerase activity	1.22E-03
26	GO:0016872: intramolecular lyase activity	2.03E-03
27	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	2.03E-03
28	GO:0004332: fructose-bisphosphate aldolase activity	2.96E-03
29	GO:0004747: ribokinase activity	2.96E-03
30	GO:0051537: 2 iron, 2 sulfur cluster binding	3.74E-03
31	GO:0005381: iron ion transmembrane transporter activity	4.05E-03
32	GO:0004470: malic enzyme activity	4.05E-03
33	GO:0004017: adenylate kinase activity	4.05E-03
34	GO:0070006: metalloaminopeptidase activity	4.05E-03
35	GO:0005215: transporter activity	4.16E-03
36	GO:0004222: metalloendopeptidase activity	4.58E-03
37	GO:0051287: NAD binding	4.75E-03
38	GO:0004834: tryptophan synthase activity	5.23E-03
39	GO:0008235: metalloexopeptidase activity	5.23E-03
40	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.51E-03
41	GO:0019201: nucleotide kinase activity	6.52E-03
42	GO:0008121: ubiquinol-cytochrome-c reductase activity	6.52E-03
43	GO:0019205: nucleobase-containing compound kinase activity	6.52E-03
44	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	6.52E-03
45	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	6.52E-03
46	GO:0004089: carbonate dehydratase activity	6.52E-03
47	GO:0008047: enzyme activator activity	7.91E-03
48	GO:0004427: inorganic diphosphatase activity	9.41E-03
49	GO:0042578: phosphoric ester hydrolase activity	9.41E-03
50	GO:0008266: poly(U) RNA binding	9.41E-03
51	GO:0016776: phosphotransferase activity, phosphate group as acceptor	9.41E-03
52	GO:0004177: aminopeptidase activity	1.10E-02
53	GO:0046914: transition metal ion binding	1.26E-02
54	GO:0048037: cofactor binding	1.44E-02
55	GO:0003690: double-stranded DNA binding	1.44E-02
56	GO:0042803: protein homodimerization activity	1.82E-02
57	GO:0046961: proton-transporting ATPase activity, rotational mechanism	2.02E-02
58	GO:0004713: protein tyrosine kinase activity	2.22E-02
59	GO:0051536: iron-sulfur cluster binding	2.77E-02
60	GO:0015297: antiporter activity	3.12E-02
61	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	3.38E-02
62	GO:0015078: hydrogen ion transmembrane transporter activity	3.62E-02
63	GO:0016597: amino acid binding	4.14E-02
64	GO:0051539: 4 iron, 4 sulfur cluster binding	4.68E-02
65	GO:0008483: transaminase activity	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0009512: cytochrome b6f complex	0.00E+00
2	GO:0030093: chloroplast photosystem I	0.00E+00
3	GO:0009507: chloroplast	3.31E-35
4	GO:0009535: chloroplast thylakoid membrane	3.31E-24
5	GO:0009579: thylakoid	3.17E-22
6	GO:0009941: chloroplast envelope	4.52E-16
7	GO:0009534: chloroplast thylakoid	4.48E-14
8	GO:0009543: chloroplast thylakoid lumen	6.30E-12
9	GO:0031977: thylakoid lumen	6.64E-12
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.00E-11
11	GO:0009522: photosystem I	1.05E-08
12	GO:0009570: chloroplast stroma	3.24E-07
13	GO:0009538: photosystem I reaction center	5.28E-07
14	GO:0010287: plastoglobule	1.51E-06
15	GO:0009508: plastid chromosome	1.38E-04
16	GO:0019898: extrinsic component of membrane	2.19E-04
17	GO:0009654: photosystem II oxygen evolving complex	3.20E-04
18	GO:0016020: membrane	4.11E-04
19	GO:0009706: chloroplast inner membrane	4.73E-04
20	GO:0042406: extrinsic component of endoplasmic reticulum membrane	5.25E-04
21	GO:0009517: PSII associated light-harvesting complex II	5.25E-04
22	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	5.25E-04
23	GO:0009523: photosystem II	7.66E-04
24	GO:0009295: nucleoid	1.11E-03
25	GO:0010319: stromule	1.16E-03
26	GO:0042651: thylakoid membrane	1.56E-03
27	GO:0048046: apoplast	4.06E-03
28	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	6.52E-03