Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G056462

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0048574: long-day photoperiodism, flowering2.84E-05
2GO:0009956: radial pattern formation7.57E-05
3GO:0010638: positive regulation of organelle organization1.37E-04
4GO:0048235: pollen sperm cell differentiation1.37E-04
5GO:0008356: asymmetric cell division2.10E-04
6GO:0033044: regulation of chromosome organization2.91E-04
7GO:0010050: vegetative phase change3.81E-04
8GO:0007267: cell-cell signaling3.81E-04
9GO:0055072: iron ion homeostasis4.76E-04
10GO:0006396: RNA processing5.57E-04
11GO:0010073: meristem maintenance5.79E-04
12GO:0016572: histone phosphorylation6.88E-04
13GO:0009451: RNA modification8.04E-04
14GO:0006338: chromatin remodeling8.04E-04
15GO:0006312: mitotic recombination9.26E-04
16GO:0009616: virus induced gene silencing9.26E-04
17GO:0019915: lipid storage1.05E-03
18GO:0001522: pseudouridine synthesis1.18E-03
19GO:0006281: DNA repair1.22E-03
20GO:0006289: nucleotide-excision repair1.32E-03
21GO:0031048: chromatin silencing by small RNA1.32E-03
22GO:0010014: meristem initiation1.45E-03
23GO:0007131: reciprocal meiotic recombination1.45E-03
24GO:0010162: seed dormancy process1.45E-03
25GO:0009855: determination of bilateral symmetry1.45E-03
26GO:0050826: response to freezing1.60E-03
27GO:0010267: production of ta-siRNAs involved in RNA interference1.89E-03
28GO:0035196: production of miRNAs involved in gene silencing by miRNA1.89E-03
29GO:0044267: cellular protein metabolic process1.89E-03
30GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.03E-03
31GO:0010182: sugar mediated signaling pathway2.19E-03
32GO:0010090: trichome morphogenesis2.19E-03
33GO:0006346: methylation-dependent chromatin silencing2.34E-03
34GO:0009845: seed germination2.67E-03
35GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation2.84E-03
36GO:0009560: embryo sac egg cell differentiation3.21E-03
37GO:0007049: cell cycle3.40E-03
38GO:0048366: leaf development3.79E-03
39GO:0009086: methionine biosynthetic process3.79E-03
40GO:0051567: histone H3-K9 methylation4.82E-03
41GO:0009640: photomorphogenesis5.03E-03
42GO:0006306: DNA methylation5.24E-03
43GO:0006414: translational elongation5.46E-03
44GO:0000398: mRNA splicing, via spliceosome5.69E-03
45GO:0006952: defense response8.38E-03
46GO:0009909: regulation of flower development1.00E-02
47GO:0016567: protein ubiquitination1.52E-02
48GO:0006355: regulation of transcription, DNA-templated2.41E-02
49GO:0009793: embryo development ending in seed dormancy2.65E-02
50GO:0006810: transport2.92E-02
51GO:0006457: protein folding3.41E-02
52GO:0015031: protein transport4.11E-02
RankGO TermAdjusted P value
1GO:0070628: proteasome binding1.37E-04
2GO:0043130: ubiquitin binding5.79E-04
3GO:0009982: pseudouridine synthase activity8.04E-04
4GO:0003684: damaged DNA binding9.26E-04
5GO:0005200: structural constituent of cytoskeleton2.03E-03
6GO:0003746: translation elongation factor activity4.40E-03
7GO:0051082: unfolded protein binding1.36E-02
RankGO TermAdjusted P value
1GO:0000812: Swr1 complex0.00E+00
2GO:0035267: NuA4 histone acetyltransferase complex2.84E-05
3GO:0031011: Ino80 complex3.81E-04
4GO:0016604: nuclear body5.79E-04
5GO:0019013: viral nucleocapsid2.19E-03
6GO:0005730: nucleolus3.10E-02