co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G056424

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030243: cellulose metabolic process	0.00E+00
2	GO:0030388: fructose 1,6-bisphosphate metabolic process	0.00E+00
3	GO:0051188: cofactor biosynthetic process	0.00E+00
4	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
5	GO:0042550: photosystem I stabilization	0.00E+00
6	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	0.00E+00
7	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
8	GO:0010028: xanthophyll cycle	0.00E+00
9	GO:0019676: ammonia assimilation cycle	0.00E+00
10	GO:0035436: triose phosphate transmembrane transport	0.00E+00
11	GO:0015714: phosphoenolpyruvate transport	0.00E+00
12	GO:0015995: chlorophyll biosynthetic process	3.59E-18
13	GO:0015979: photosynthesis	3.91E-16
14	GO:0006098: pentose-phosphate shunt	1.55E-13
15	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.55E-13
16	GO:0016117: carotenoid biosynthetic process	2.53E-13
17	GO:0009773: photosynthetic electron transport in photosystem I	1.19E-11
18	GO:0010207: photosystem II assembly	8.29E-11
19	GO:0010027: thylakoid membrane organization	4.93E-10
20	GO:0006364: rRNA processing	1.94E-09
21	GO:0006636: unsaturated fatty acid biosynthetic process	3.61E-09
22	GO:0043085: positive regulation of catalytic activity	2.06E-08
23	GO:0009767: photosynthetic electron transport chain	1.31E-07
24	GO:0009108: coenzyme biosynthetic process	1.36E-07
25	GO:0009106: lipoate metabolic process	1.36E-07
26	GO:0006766: vitamin metabolic process	1.36E-07
27	GO:0009902: chloroplast relocation	1.74E-07
28	GO:0009637: response to blue light	5.02E-07
29	GO:0010114: response to red light	8.02E-07
30	GO:0010218: response to far red light	1.24E-06
31	GO:0006546: glycine catabolic process	2.72E-06
32	GO:0009416: response to light stimulus	2.87E-06
33	GO:0070838: divalent metal ion transport	2.92E-06
34	GO:0009772: photosynthetic electron transport in photosystem II	2.92E-06
35	GO:0019748: secondary metabolic process	2.92E-06
36	GO:0030003: cellular cation homeostasis	1.23E-05
37	GO:0000023: maltose metabolic process	2.72E-05
38	GO:0009072: aromatic amino acid family metabolic process	3.31E-05
39	GO:0019252: starch biosynthetic process	3.89E-05
40	GO:0009695: jasmonic acid biosynthetic process	4.19E-05
41	GO:0006733: oxidoreduction coenzyme metabolic process	5.40E-05
42	GO:0009697: salicylic acid biosynthetic process	7.00E-05
43	GO:0006814: sodium ion transport	7.00E-05
44	GO:0080167: response to karrikin	8.50E-05
45	GO:0019216: regulation of lipid metabolic process	1.19E-04
46	GO:0009595: detection of biotic stimulus	1.19E-04
47	GO:0009117: nucleotide metabolic process	1.19E-04
48	GO:0009409: response to cold	1.26E-04
49	GO:0019344: cysteine biosynthetic process	1.68E-04
50	GO:0019761: glucosinolate biosynthetic process	1.94E-04
51	GO:0000096: sulfur amino acid metabolic process	2.11E-04
52	GO:0043900: regulation of multi-organism process	2.11E-04
53	GO:0019684: photosynthesis, light reaction	3.09E-04
54	GO:0010155: regulation of proton transport	3.70E-04
55	GO:0010103: stomatal complex morphogenesis	4.38E-04
56	GO:0015986: ATP synthesis coupled proton transport	5.95E-04
57	GO:0010310: regulation of hydrogen peroxide metabolic process	6.45E-04
58	GO:0022900: electron transport chain	7.02E-04
59	GO:0015977: carbon fixation	8.44E-04
60	GO:0016556: mRNA modification	1.33E-03
61	GO:0044272: sulfur compound biosynthetic process	1.58E-03
62	GO:0006875: cellular metal ion homeostasis	1.58E-03
63	GO:0010236: plastoquinone biosynthetic process	1.58E-03
64	GO:0032544: plastid translation	1.58E-03
65	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.61E-03
66	GO:0031408: oxylipin biosynthetic process	2.23E-03
67	GO:0042793: transcription from plastid promoter	2.23E-03
68	GO:0042742: defense response to bacterium	2.55E-03
69	GO:0016024: CDP-diacylglycerol biosynthetic process	2.60E-03
70	GO:0019760: glucosinolate metabolic process	2.60E-03
71	GO:0009750: response to fructose	2.97E-03
72	GO:0006833: water transport	2.97E-03
73	GO:0009744: response to sucrose	3.06E-03
74	GO:0030154: cell differentiation	3.41E-03
75	GO:0009749: response to glucose	3.41E-03
76	GO:0009657: plastid organization	3.41E-03
77	GO:0009624: response to nematode	3.84E-03
78	GO:0050821: protein stabilization	3.85E-03
79	GO:0016485: protein processing	3.85E-03
80	GO:0006782: protoporphyrinogen IX biosynthetic process	3.85E-03
81	GO:0045037: protein import into chloroplast stroma	3.85E-03
82	GO:0009966: regulation of signal transduction	3.87E-03
83	GO:0009644: response to high light intensity	4.12E-03
84	GO:0006612: protein targeting to membrane	4.37E-03
85	GO:0010200: response to chitin	4.37E-03
86	GO:0035304: regulation of protein dephosphorylation	4.89E-03
87	GO:0046777: protein autophosphorylation	4.89E-03
88	GO:0010363: regulation of plant-type hypersensitive response	4.89E-03
89	GO:0010189: vitamin E biosynthetic process	5.24E-03
90	GO:0006796: phosphate-containing compound metabolic process	5.24E-03
91	GO:0006569: tryptophan catabolic process	5.24E-03
92	GO:0009088: threonine biosynthetic process	5.24E-03
93	GO:0060416: response to growth hormone	5.24E-03
94	GO:0050790: regulation of catalytic activity	5.24E-03
95	GO:0009813: flavonoid biosynthetic process	5.24E-03
96	GO:0034755: iron ion transmembrane transport	5.24E-03
97	GO:0007568: aging	5.24E-03
98	GO:0015994: chlorophyll metabolic process	5.24E-03
99	GO:0009867: jasmonic acid mediated signaling pathway	5.44E-03
100	GO:0031348: negative regulation of defense response	5.44E-03
101	GO:0006542: glutamine biosynthetic process	6.79E-03
102	GO:0006783: heme biosynthetic process	6.79E-03
103	GO:0006568: tryptophan metabolic process	6.79E-03
104	GO:0000165: MAPK cascade	8.00E-03
105	GO:0000413: protein peptidyl-prolyl isomerization	8.00E-03
106	GO:0033014: tetrapyrrole biosynthetic process	8.47E-03
107	GO:0010206: photosystem II repair	8.47E-03
108	GO:0034660: ncRNA metabolic process	8.47E-03
109	GO:0009704: de-etiolation	8.47E-03
110	GO:0009411: response to UV	8.47E-03
111	GO:0009814: defense response, incompatible interaction	8.47E-03
112	GO:0009735: response to cytokinin	9.49E-03
113	GO:0005985: sucrose metabolic process	1.03E-02
114	GO:0000162: tryptophan biosynthetic process	1.22E-02
115	GO:0009684: indoleacetic acid biosynthetic process	1.43E-02
116	GO:0009832: plant-type cell wall biogenesis	1.43E-02
117	GO:0048527: lateral root development	1.65E-02
118	GO:0006754: ATP biosynthetic process	1.65E-02
119	GO:0006354: DNA-templated transcription, elongation	1.65E-02
120	GO:0006006: glucose metabolic process	1.65E-02
121	GO:0009765: photosynthesis, light harvesting	1.88E-02
122	GO:0006779: porphyrin-containing compound biosynthetic process	1.88E-02
123	GO:0045036: protein targeting to chloroplast	2.12E-02
124	GO:0006096: glycolytic process	2.26E-02
125	GO:0008652: cellular amino acid biosynthetic process	2.26E-02
126	GO:0006655: phosphatidylglycerol biosynthetic process	2.37E-02
127	GO:0007030: Golgi organization	2.63E-02
128	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.63E-02
129	GO:0009965: leaf morphogenesis	2.78E-02
130	GO:0016049: cell growth	2.90E-02
131	GO:0006972: hyperosmotic response	2.90E-02
132	GO:0015992: proton transport	3.18E-02
133	GO:0016126: sterol biosynthetic process	3.18E-02
134	GO:0006631: fatty acid metabolic process	3.18E-02
135	GO:0018298: protein-chromophore linkage	3.47E-02
136	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	3.47E-02
137	GO:0045893: positive regulation of transcription, DNA-templated	3.68E-02
138	GO:0050832: defense response to fungus	3.85E-02
139	GO:0055114: oxidation-reduction process	3.87E-02
140	GO:0006807: nitrogen compound metabolic process	4.08E-02
141	GO:0010224: response to UV-B	4.08E-02
142	GO:0009817: defense response to fungus, incompatible interaction	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
3	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
4	GO:0045550: geranylgeranyl reductase activity	0.00E+00
5	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
6	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
7	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
8	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
9	GO:0004802: transketolase activity	0.00E+00
10	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
11	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
12	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
13	GO:0015131: oxaloacetate transmembrane transporter activity	0.00E+00
14	GO:0051537: 2 iron, 2 sulfur cluster binding	4.19E-05
15	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.94E-05
16	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	9.55E-05
17	GO:0016984: ribulose-bisphosphate carboxylase activity	1.19E-04
18	GO:0009055: electron carrier activity	2.05E-04
19	GO:0016168: chlorophyll binding	3.70E-04
20	GO:0015140: malate transmembrane transporter activity	6.82E-04
21	GO:0008883: glutamyl-tRNA reductase activity	6.82E-04
22	GO:0004795: threonine synthase activity	6.82E-04
23	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	6.82E-04
24	GO:0004618: phosphoglycerate kinase activity	6.82E-04
25	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.82E-04
26	GO:0015088: copper uptake transmembrane transporter activity	6.82E-04
27	GO:0051536: iron-sulfur cluster binding	1.51E-03
28	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.58E-03
29	GO:0045430: chalcone isomerase activity	1.58E-03
30	GO:0004605: phosphatidate cytidylyltransferase activity	1.58E-03
31	GO:0051920: peroxiredoxin activity	1.58E-03
32	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.58E-03
33	GO:0033897: ribonuclease T2 activity	2.60E-03
34	GO:0016872: intramolecular lyase activity	2.60E-03
35	GO:0016209: antioxidant activity	3.85E-03
36	GO:0071949: FAD binding	3.85E-03
37	GO:0004332: fructose-bisphosphate aldolase activity	3.85E-03
38	GO:0004765: shikimate kinase activity	3.85E-03
39	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.85E-03
40	GO:0030234: enzyme regulator activity	5.24E-03
41	GO:0005381: iron ion transmembrane transporter activity	5.24E-03
42	GO:0004356: glutamate-ammonia ligase activity	6.79E-03
43	GO:0004834: tryptophan synthase activity	6.79E-03
44	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	8.47E-03
45	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.49E-03
46	GO:0004427: inorganic diphosphatase activity	1.22E-02
47	GO:0042578: phosphoric ester hydrolase activity	1.22E-02
48	GO:0046914: transition metal ion binding	1.65E-02
49	GO:0043531: ADP binding	1.88E-02
50	GO:0003690: double-stranded DNA binding	1.88E-02
51	GO:0050661: NADP binding	2.02E-02
52	GO:0046961: proton-transporting ATPase activity, rotational mechanism	2.63E-02
53	GO:0005215: transporter activity	2.76E-02
54	GO:0019901: protein kinase binding	2.90E-02
55	GO:0004713: protein tyrosine kinase activity	2.90E-02
56	GO:0008080: N-acetyltransferase activity	3.18E-02
57	GO:0015078: hydrogen ion transmembrane transporter activity	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0009512: cytochrome b6f complex	0.00E+00
2	GO:0030093: chloroplast photosystem I	0.00E+00
3	GO:0009507: chloroplast	2.83E-30
4	GO:0009535: chloroplast thylakoid membrane	4.66E-26
5	GO:0009941: chloroplast envelope	6.07E-23
6	GO:0009579: thylakoid	4.67E-19
7	GO:0009534: chloroplast thylakoid	3.55E-13
8	GO:0009570: chloroplast stroma	5.12E-13
9	GO:0009543: chloroplast thylakoid lumen	2.47E-11
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.21E-10
11	GO:0009522: photosystem I	7.05E-10
12	GO:0031977: thylakoid lumen	1.31E-09
13	GO:0010287: plastoglobule	2.43E-07
14	GO:0009538: photosystem I reaction center	1.02E-06
15	GO:0009523: photosystem II	1.25E-04
16	GO:0009508: plastid chromosome	2.11E-04
17	GO:0010319: stromule	2.21E-04
18	GO:0019898: extrinsic component of membrane	3.29E-04
19	GO:0009654: photosystem II oxygen evolving complex	4.75E-04
20	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	6.82E-04
21	GO:0042406: extrinsic component of endoplasmic reticulum membrane	6.82E-04
22	GO:0009533: chloroplast stromal thylakoid	1.58E-03
23	GO:0009295: nucleoid	1.61E-03
24	GO:0042651: thylakoid membrane	2.23E-03
25	GO:0048046: apoplast	2.66E-03
26	GO:0016020: membrane	3.62E-03
27	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	8.47E-03
28	GO:0009536: plastid	3.82E-02