Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G054120

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010269: response to selenium ion0.00E+00
2GO:0018283: iron incorporation into metallo-sulfur cluster0.00E+00
3GO:0043085: positive regulation of catalytic activity3.12E-06
4GO:0010207: photosystem II assembly4.77E-06
5GO:0009773: photosynthetic electron transport in photosystem I5.98E-06
6GO:0009902: chloroplast relocation1.39E-05
7GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.73E-05
8GO:0015979: photosynthesis2.14E-05
9GO:0006878: cellular copper ion homeostasis8.47E-05
10GO:0001887: selenium compound metabolic process8.47E-05
11GO:0006534: cysteine metabolic process8.47E-05
12GO:0006427: histidyl-tRNA aminoacylation8.47E-05
13GO:0042793: transcription from plastid promoter1.12E-04
14GO:0010027: thylakoid membrane organization2.20E-04
15GO:0035304: regulation of protein dephosphorylation2.72E-04
16GO:0007186: G-protein coupled receptor signaling pathway3.74E-04
17GO:0006733: oxidoreduction coenzyme metabolic process3.74E-04
18GO:0045454: cell redox homeostasis5.50E-04
19GO:0045038: protein import into chloroplast thylakoid membrane5.58E-04
20GO:0006014: D-ribose metabolic process5.58E-04
21GO:0019216: regulation of lipid metabolic process5.58E-04
22GO:0006790: sulfur compound metabolic process5.58E-04
23GO:0009595: detection of biotic stimulus5.58E-04
24GO:0009117: nucleotide metabolic process5.58E-04
25GO:0045037: protein import into chloroplast stroma5.58E-04
26GO:0019344: cysteine biosynthetic process6.44E-04
27GO:0006364: rRNA processing6.93E-04
28GO:0070084: protein initiator methionine removal7.61E-04
29GO:0009772: photosynthetic electron transport in photosystem II7.61E-04
30GO:0043900: regulation of multi-organism process7.61E-04
31GO:0019748: secondary metabolic process7.61E-04
32GO:0000023: maltose metabolic process9.26E-04
33GO:0006535: cysteine biosynthetic process from serine9.88E-04
34GO:0009108: coenzyme biosynthetic process1.23E-03
35GO:0010206: photosystem II repair1.23E-03
36GO:0034660: ncRNA metabolic process1.23E-03
37GO:0006801: superoxide metabolic process1.23E-03
38GO:0009106: lipoate metabolic process1.23E-03
39GO:0055072: iron ion homeostasis1.23E-03
40GO:0006766: vitamin metabolic process1.23E-03
41GO:0009987: cellular process1.23E-03
42GO:0010310: regulation of hydrogen peroxide metabolic process1.48E-03
43GO:0048868: pollen tube development1.75E-03
44GO:0009072: aromatic amino acid family metabolic process1.75E-03
45GO:0000302: response to reactive oxygen species2.02E-03
46GO:0009697: salicylic acid biosynthetic process2.31E-03
47GO:0016556: mRNA modification2.31E-03
48GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.60E-03
49GO:0006546: glycine catabolic process2.60E-03
50GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway2.60E-03
51GO:0010039: response to iron ion2.60E-03
52GO:0009765: photosynthesis, light harvesting2.60E-03
53GO:0019252: starch biosynthetic process2.73E-03
54GO:0006655: phosphatidylglycerol biosynthetic process3.26E-03
55GO:0031408: oxylipin biosynthetic process3.26E-03
56GO:0006636: unsaturated fatty acid biosynthetic process3.62E-03
57GO:0009749: response to glucose4.37E-03
58GO:0009657: plastid organization4.37E-03
59GO:0018298: protein-chromophore linkage4.75E-03
60GO:0010155: regulation of proton transport4.75E-03
61GO:0006417: regulation of translation4.75E-03
62GO:0006612: protein targeting to membrane5.14E-03
63GO:0010103: stomatal complex morphogenesis5.14E-03
64GO:0010200: response to chitin5.14E-03
65GO:0046777: protein autophosphorylation5.55E-03
66GO:0010182: sugar mediated signaling pathway5.55E-03
67GO:0010363: regulation of plant-type hypersensitive response5.55E-03
68GO:0009867: jasmonic acid mediated signaling pathway5.98E-03
69GO:0031348: negative regulation of defense response5.98E-03
70GO:0009695: jasmonic acid biosynthetic process5.98E-03
71GO:0000165: MAPK cascade7.77E-03
72GO:0000413: protein peptidyl-prolyl isomerization7.77E-03
73GO:0009073: aromatic amino acid family biosynthetic process9.23E-03
74GO:0006662: glycerol ether metabolic process9.23E-03
75GO:0009637: response to blue light9.73E-03
76GO:0019761: glucosinolate biosynthetic process1.02E-02
77GO:0010114: response to red light1.08E-02
78GO:0010218: response to far red light1.19E-02
79GO:0006418: tRNA aminoacylation for protein translation1.30E-02
80GO:0009658: chloroplast organization1.30E-02
81GO:0009744: response to sucrose1.41E-02
82GO:0006508: proteolysis1.52E-02
83GO:0015995: chlorophyll biosynthetic process1.59E-02
84GO:0008652: cellular amino acid biosynthetic process1.59E-02
85GO:0006812: cation transport1.59E-02
86GO:0042742: defense response to bacterium1.68E-02
87GO:0030001: metal ion transport1.72E-02
88GO:0045893: positive regulation of transcription, DNA-templated2.25E-02
89GO:0050832: defense response to fungus2.32E-02
90GO:0006413: translational initiation2.76E-02
91GO:0006184: obsolete GTP catabolic process3.80E-02
RankGO TermAdjusted P value
1GO:0015038: glutathione disulfide oxidoreductase activity0.00E+00
2GO:0030385: ferredoxin:thioredoxin reductase activity0.00E+00
3GO:0008937: ferredoxin-NAD(P) reductase activity0.00E+00
4GO:0016532: superoxide dismutase copper chaperone activity0.00E+00
5GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
6GO:0009000: selenocysteine lyase activity0.00E+00
7GO:0004821: histidine-tRNA ligase activity8.47E-05
8GO:0031071: cysteine desulfurase activity8.47E-05
9GO:0015035: protein disulfide oxidoreductase activity1.50E-04
10GO:0004124: cysteine synthase activity5.58E-04
11GO:0004747: ribokinase activity5.58E-04
12GO:0070006: metalloaminopeptidase activity7.61E-04
13GO:0008235: metalloexopeptidase activity9.88E-04
14GO:0004784: superoxide dismutase activity1.48E-03
15GO:0004177: aminopeptidase activity2.02E-03
16GO:0008080: N-acetyltransferase activity4.37E-03
17GO:0016168: chlorophyll binding4.75E-03
18GO:0015297: antiporter activity5.55E-03
19GO:0009055: electron carrier activity5.77E-03
20GO:0004222: metalloendopeptidase activity6.86E-03
21GO:0051539: 4 iron, 4 sulfur cluster binding8.25E-03
22GO:0003755: peptidyl-prolyl cis-trans isomerase activity8.74E-03
23GO:0016773: phosphotransferase activity, alcohol group as acceptor1.02E-02
24GO:0004812: aminoacyl-tRNA ligase activity1.41E-02
25GO:0004252: serine-type endopeptidase activity2.61E-02
26GO:0003743: translation initiation factor activity3.22E-02
27GO:0030170: pyridoxal phosphate binding3.72E-02
28GO:0016740: transferase activity4.63E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.35E-12
2GO:0009535: chloroplast thylakoid membrane7.98E-07
3GO:0009534: chloroplast thylakoid2.20E-06
4GO:0009941: chloroplast envelope2.73E-06
5GO:0009527: plastid outer membrane8.47E-05
6GO:0030093: chloroplast photosystem I8.47E-05
7GO:0009528: plastid inner membrane8.47E-05
8GO:0009522: photosystem I2.72E-04
9GO:0009579: thylakoid3.20E-04
10GO:0009523: photosystem II5.47E-04
11GO:0009538: photosystem I reaction center5.58E-04
12GO:0009508: plastid chromosome7.61E-04
13GO:0031977: thylakoid lumen8.06E-04
14GO:0009570: chloroplast stroma1.41E-03
15GO:0009532: plastid stroma1.48E-03
16GO:0009295: nucleoid2.60E-03
17GO:0009543: chloroplast thylakoid lumen3.26E-03
18GO:0009706: chloroplast inner membrane6.86E-03
19GO:0010319: stromule1.08E-02
20GO:0010287: plastoglobule1.59E-02