co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G053927

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043043: peptide biosynthetic process	0.00E+00
2	GO:0090391: granum assembly	0.00E+00
3	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
4	GO:0043953: protein transport by the Tat complex	0.00E+00
5	GO:0032543: mitochondrial translation	0.00E+00
6	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
7	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
8	GO:0009658: chloroplast organization	1.41E-11
9	GO:0010027: thylakoid membrane organization	6.13E-11
10	GO:0042793: transcription from plastid promoter	5.45E-10
11	GO:0009902: chloroplast relocation	1.10E-09
12	GO:0045893: positive regulation of transcription, DNA-templated	3.26E-07
13	GO:0035304: regulation of protein dephosphorylation	4.14E-07
14	GO:0045038: protein import into chloroplast thylakoid membrane	4.85E-07
15	GO:0006364: rRNA processing	9.20E-07
16	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.71E-06
17	GO:0010207: photosystem II assembly	3.86E-06
18	GO:0019344: cysteine biosynthetic process	3.89E-06
19	GO:0045037: protein import into chloroplast stroma	7.27E-05
20	GO:0006353: DNA-templated transcription, termination	7.27E-05
21	GO:0006655: phosphatidylglycerol biosynthetic process	8.55E-05
22	GO:0016226: iron-sulfur cluster assembly	1.16E-04
23	GO:0006508: proteolysis	1.43E-04
24	GO:0006457: protein folding	1.70E-04
25	GO:0006788: heme oxidation	5.07E-04
26	GO:0018160: peptidyl-pyrromethane cofactor linkage	5.07E-04
27	GO:0006433: prolyl-tRNA aminoacylation	5.07E-04
28	GO:0071722: detoxification of arsenic-containing substance	5.07E-04
29	GO:0009073: aromatic amino acid family biosynthetic process	8.01E-04
30	GO:0006546: glycine catabolic process	1.05E-03
31	GO:0006779: porphyrin-containing compound biosynthetic process	1.05E-03
32	GO:0032544: plastid translation	1.18E-03
33	GO:0010024: phytochromobilin biosynthetic process	1.18E-03
34	GO:0010380: regulation of chlorophyll biosynthetic process	1.18E-03
35	GO:1901671: positive regulation of superoxide dismutase activity	1.18E-03
36	GO:0019464: glycine decarboxylation via glycine cleavage system	1.18E-03
37	GO:0006432: phenylalanyl-tRNA aminoacylation	1.18E-03
38	GO:0010109: regulation of photosynthesis	1.18E-03
39	GO:0045036: protein targeting to chloroplast	1.26E-03
40	GO:0048481: plant ovule development	1.42E-03
41	GO:0000023: maltose metabolic process	1.42E-03
42	GO:0051607: defense response to virus	1.48E-03
43	GO:0000304: response to singlet oxygen	1.98E-03
44	GO:0006450: regulation of translational fidelity	1.98E-03
45	GO:0006733: oxidoreduction coenzyme metabolic process	1.98E-03
46	GO:0009247: glycolipid biosynthetic process	1.98E-03
47	GO:0015995: chlorophyll biosynthetic process	2.23E-03
48	GO:0030154: cell differentiation	2.24E-03
49	GO:0010267: production of ta-siRNAs involved in RNA interference	2.53E-03
50	GO:0035196: production of miRNAs involved in gene silencing by miRNA	2.53E-03
51	GO:0030259: lipid glycosylation	2.86E-03
52	GO:0009117: nucleotide metabolic process	2.86E-03
53	GO:0019375: galactolipid biosynthetic process	2.86E-03
54	GO:0009695: jasmonic acid biosynthetic process	3.56E-03
55	GO:0070084: protein initiator methionine removal	3.92E-03
56	GO:0006569: tryptophan catabolic process	3.92E-03
57	GO:0019748: secondary metabolic process	3.92E-03
58	GO:0010468: regulation of gene expression	3.92E-03
59	GO:0031347: regulation of defense response	5.05E-03
60	GO:0009306: protein secretion	5.05E-03
61	GO:0006749: glutathione metabolic process	5.05E-03
62	GO:0019252: starch biosynthetic process	5.81E-03
63	GO:0009108: coenzyme biosynthetic process	6.30E-03
64	GO:0033014: tetrapyrrole biosynthetic process	6.30E-03
65	GO:0006189: 'de novo' IMP biosynthetic process	6.30E-03
66	GO:0010206: photosystem II repair	6.30E-03
67	GO:0034660: ncRNA metabolic process	6.30E-03
68	GO:0009106: lipoate metabolic process	6.30E-03
69	GO:0032880: regulation of protein localization	6.30E-03
70	GO:0006766: vitamin metabolic process	6.30E-03
71	GO:0009987: cellular process	6.30E-03
72	GO:0043039: tRNA aminoacylation	7.65E-03
73	GO:0006399: tRNA metabolic process	7.65E-03
74	GO:0051604: protein maturation	7.65E-03
75	GO:0006098: pentose-phosphate shunt	7.76E-03
76	GO:0019761: glucosinolate biosynthetic process	7.83E-03
77	GO:0009793: embryo development ending in seed dormancy	8.08E-03
78	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	9.09E-03
79	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	9.09E-03
80	GO:0045087: innate immune response	9.09E-03
81	GO:0009684: indoleacetic acid biosynthetic process	1.06E-02
82	GO:0009407: toxin catabolic process	1.06E-02
83	GO:0000302: response to reactive oxygen species	1.06E-02
84	GO:0006418: tRNA aminoacylation for protein translation	1.10E-02
85	GO:0006414: translational elongation	1.24E-02
86	GO:0010228: vegetative to reproductive phase transition of meristem	1.56E-02
87	GO:0006200: obsolete ATP catabolic process	1.73E-02
88	GO:0008033: tRNA processing	1.75E-02
89	GO:0031408: oxylipin biosynthetic process	1.75E-02
90	GO:0048316: seed development	1.75E-02
91	GO:0009965: leaf morphogenesis	1.82E-02
92	GO:0006636: unsaturated fatty acid biosynthetic process	1.95E-02
93	GO:0042545: cell wall modification	2.15E-02
94	GO:0019684: photosynthesis, light reaction	2.36E-02
95	GO:0010155: regulation of proton transport	2.57E-02
96	GO:0009627: systemic acquired resistance	2.79E-02
97	GO:0010103: stomatal complex morphogenesis	2.79E-02
98	GO:0006352: DNA-templated transcription, initiation	2.79E-02
99	GO:0009773: photosynthetic electron transport in photosystem I	3.02E-02
100	GO:0046777: protein autophosphorylation	3.02E-02
101	GO:0009553: embryo sac development	3.25E-02
102	GO:0009620: response to fungus	3.25E-02
103	GO:0009409: response to cold	3.27E-02
104	GO:0042254: ribosome biogenesis	3.74E-02
105	GO:0009853: photorespiration	3.99E-02
106	GO:0006626: protein targeting to mitochondrion	4.25E-02
107	GO:0030163: protein catabolic process	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0046408: chlorophyll synthetase activity	0.00E+00
4	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
5	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
6	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
7	GO:0004252: serine-type endopeptidase activity	3.57E-08
8	GO:0000774: adenyl-nucleotide exchange factor activity	3.22E-05
9	GO:0008233: peptidase activity	2.28E-04
10	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	3.03E-04
11	GO:0051087: chaperone binding	4.16E-04
12	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	5.07E-04
13	GO:0035250: UDP-galactosyltransferase activity	5.07E-04
14	GO:0004362: glutathione-disulfide reductase activity	5.07E-04
15	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	5.07E-04
16	GO:0008194: UDP-glycosyltransferase activity	5.07E-04
17	GO:0004827: proline-tRNA ligase activity	5.07E-04
18	GO:0004418: hydroxymethylbilane synthase activity	5.07E-04
19	GO:0008236: serine-type peptidase activity	8.89E-04
20	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.18E-03
21	GO:0004826: phenylalanine-tRNA ligase activity	1.18E-03
22	GO:0004462: lactoylglutathione lyase activity	1.18E-03
23	GO:0004392: heme oxygenase (decyclizing) activity	1.18E-03
24	GO:0016209: antioxidant activity	2.86E-03
25	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	2.86E-03
26	GO:0070569: uridylyltransferase activity	2.86E-03
27	GO:0004659: prenyltransferase activity	2.86E-03
28	GO:0004765: shikimate kinase activity	2.86E-03
29	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	2.86E-03
30	GO:0070006: metalloaminopeptidase activity	3.92E-03
31	GO:0016987: sigma factor activity	3.92E-03
32	GO:0008235: metalloexopeptidase activity	5.05E-03
33	GO:0008173: RNA methyltransferase activity	5.05E-03
34	GO:0008312: 7S RNA binding	7.65E-03
35	GO:0043022: ribosome binding	7.65E-03
36	GO:0003746: translation elongation factor activity	9.03E-03
37	GO:0008266: poly(U) RNA binding	9.09E-03
38	GO:0051082: unfolded protein binding	9.66E-03
39	GO:0004177: aminopeptidase activity	1.06E-02
40	GO:0000049: tRNA binding	1.06E-02
41	GO:0046914: transition metal ion binding	1.22E-02
42	GO:0004812: aminoacyl-tRNA ligase activity	1.24E-02
43	GO:0043531: ADP binding	1.39E-02
44	GO:0042803: protein homodimerization activity	1.73E-02
45	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.36E-02
46	GO:0016887: ATPase activity	2.86E-02
47	GO:0008565: protein transporter activity	3.25E-02
48	GO:0031072: heat shock protein binding	3.25E-02
49	GO:0042802: identical protein binding	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0080085: signal recognition particle, chloroplast targeting	0.00E+00
3	GO:0055035: plastid thylakoid membrane	0.00E+00
4	GO:0009507: chloroplast	1.04E-23
5	GO:0009570: chloroplast stroma	1.59E-19
6	GO:0009941: chloroplast envelope	3.19E-15
7	GO:0009840: chloroplastic endopeptidase Clp complex	1.03E-11
8	GO:0009535: chloroplast thylakoid membrane	1.22E-10
9	GO:0009532: plastid stroma	8.01E-10
10	GO:0009534: chloroplast thylakoid	5.55E-08
11	GO:0009579: thylakoid	3.72E-06
12	GO:0009526: plastid envelope	5.07E-04
13	GO:0005960: glycine cleavage complex	5.07E-04
14	GO:0009533: chloroplast stromal thylakoid	1.18E-03
15	GO:0009536: plastid	1.48E-03
16	GO:0009706: chloroplast inner membrane	4.36E-03
17	GO:0031225: anchored component of membrane	5.05E-03
18	GO:0005759: mitochondrial matrix	5.23E-03
19	GO:0048500: signal recognition particle	6.30E-03
20	GO:0010319: stromule	8.42E-03
21	GO:0005739: mitochondrion	1.28E-02
22	GO:0009295: nucleoid	1.39E-02
23	GO:0042651: thylakoid membrane	1.75E-02
24	GO:0048046: apoplast	3.99E-02