co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G053711

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	0.00E+00
2	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
3	GO:0010028: xanthophyll cycle	0.00E+00
4	GO:0051188: cofactor biosynthetic process	0.00E+00
5	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
6	GO:0042550: photosystem I stabilization	0.00E+00
7	GO:0009234: menaquinone biosynthetic process	0.00E+00
8	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
9	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.42E-14
10	GO:0006098: pentose-phosphate shunt	2.58E-11
11	GO:0010207: photosystem II assembly	2.59E-11
12	GO:0015995: chlorophyll biosynthetic process	1.38E-10
13	GO:0010027: thylakoid membrane organization	1.56E-10
14	GO:0016117: carotenoid biosynthetic process	7.65E-09
15	GO:0006364: rRNA processing	9.55E-09
16	GO:0015979: photosynthesis	1.93E-08
17	GO:0000096: sulfur amino acid metabolic process	1.94E-06
18	GO:0009902: chloroplast relocation	2.63E-06
19	GO:0009767: photosynthetic electron transport chain	3.63E-06
20	GO:0006636: unsaturated fatty acid biosynthetic process	5.12E-06
21	GO:0006766: vitamin metabolic process	8.26E-06
22	GO:0009108: coenzyme biosynthetic process	8.26E-06
23	GO:0009106: lipoate metabolic process	8.26E-06
24	GO:0032544: plastid translation	1.15E-05
25	GO:0043085: positive regulation of catalytic activity	5.43E-05
26	GO:0006546: glycine catabolic process	6.64E-05
27	GO:0045036: protein targeting to chloroplast	8.82E-05
28	GO:0009637: response to blue light	1.10E-04
29	GO:0042793: transcription from plastid promoter	1.14E-04
30	GO:0019761: glucosinolate biosynthetic process	1.26E-04
31	GO:0010114: response to red light	1.44E-04
32	GO:0019748: secondary metabolic process	1.62E-04
33	GO:0070838: divalent metal ion transport	1.62E-04
34	GO:0016226: iron-sulfur cluster assembly	1.65E-04
35	GO:0009416: response to light stimulus	1.85E-04
36	GO:0010218: response to far red light	1.87E-04
37	GO:0000023: maltose metabolic process	2.11E-04
38	GO:0019684: photosynthesis, light reaction	2.20E-04
39	GO:0030154: cell differentiation	2.20E-04
40	GO:0010155: regulation of proton transport	2.66E-04
41	GO:0030003: cellular cation homeostasis	3.71E-04
42	GO:0080167: response to karrikin	3.71E-04
43	GO:0010206: photosystem II repair	3.71E-04
44	GO:0009773: photosynthetic electron transport in photosystem I	3.72E-04
45	GO:0009695: jasmonic acid biosynthetic process	4.32E-04
46	GO:0006573: valine metabolic process	5.78E-04
47	GO:0009768: photosynthesis, light harvesting in photosystem I	5.78E-04
48	GO:0009069: serine family amino acid metabolic process	5.78E-04
49	GO:0019676: ammonia assimilation cycle	5.78E-04
50	GO:0006434: seryl-tRNA aminoacylation	5.78E-04
51	GO:0009072: aromatic amino acid family metabolic process	6.63E-04
52	GO:0016556: mRNA modification	1.05E-03
53	GO:0019344: cysteine biosynthetic process	1.14E-03
54	GO:0009765: photosynthesis, light harvesting	1.27E-03
55	GO:0006875: cellular metal ion homeostasis	1.34E-03
56	GO:0042372: phylloquinone biosynthetic process	1.34E-03
57	GO:0044272: sulfur compound biosynthetic process	1.34E-03
58	GO:0019252: starch biosynthetic process	1.35E-03
59	GO:0009658: chloroplast organization	1.95E-03
60	GO:0051289: protein homotetramerization	2.23E-03
61	GO:0006733: oxidoreduction coenzyme metabolic process	2.23E-03
62	GO:0008652: cellular amino acid biosynthetic process	2.82E-03
63	GO:0009966: regulation of signal transduction	3.04E-03
64	GO:0018298: protein-chromophore linkage	3.04E-03
65	GO:0022900: electron transport chain	3.25E-03
66	GO:0051260: protein homooligomerization	3.26E-03
67	GO:0009117: nucleotide metabolic process	3.26E-03
68	GO:0045037: protein import into chloroplast stroma	3.26E-03
69	GO:0050821: protein stabilization	3.26E-03
70	GO:0016485: protein processing	3.26E-03
71	GO:0019216: regulation of lipid metabolic process	3.26E-03
72	GO:0010103: stomatal complex morphogenesis	3.44E-03
73	GO:0009965: leaf morphogenesis	3.73E-03
74	GO:0046777: protein autophosphorylation	3.86E-03
75	GO:0009817: defense response to fungus, incompatible interaction	4.31E-03
76	GO:0050790: regulation of catalytic activity	4.47E-03
77	GO:0009813: flavonoid biosynthetic process	4.47E-03
78	GO:0034755: iron ion transmembrane transport	4.47E-03
79	GO:0007568: aging	4.47E-03
80	GO:0015994: chlorophyll metabolic process	4.47E-03
81	GO:0006796: phosphate-containing compound metabolic process	4.47E-03
82	GO:0006569: tryptophan catabolic process	4.47E-03
83	GO:0009088: threonine biosynthetic process	4.47E-03
84	GO:0060416: response to growth hormone	4.47E-03
85	GO:0045893: positive regulation of transcription, DNA-templated	5.36E-03
86	GO:0009913: epidermal cell differentiation	5.76E-03
87	GO:0007005: mitochondrion organization	5.76E-03
88	GO:0006542: glutamine biosynthetic process	5.76E-03
89	GO:0000413: protein peptidyl-prolyl isomerization	6.31E-03
90	GO:0009704: de-etiolation	7.20E-03
91	GO:0009411: response to UV	7.20E-03
92	GO:0009814: defense response, incompatible interaction	7.20E-03
93	GO:0034660: ncRNA metabolic process	7.20E-03
94	GO:0009735: response to cytokinin	7.49E-03
95	GO:0009073: aromatic amino acid family biosynthetic process	8.12E-03
96	GO:0006412: translation	8.17E-03
97	GO:0015977: carbon fixation	1.04E-02
98	GO:0009684: indoleacetic acid biosynthetic process	1.21E-02
99	GO:0048481: plant ovule development	1.25E-02
100	GO:0006418: tRNA aminoacylation for protein translation	1.33E-02
101	GO:0009409: response to cold	1.37E-02
102	GO:0006814: sodium ion transport	1.39E-02
103	GO:0006006: glucose metabolic process	1.39E-02
104	GO:0048527: lateral root development	1.39E-02
105	GO:0009697: salicylic acid biosynthetic process	1.39E-02
106	GO:0006354: DNA-templated transcription, elongation	1.39E-02
107	GO:0009744: response to sucrose	1.50E-02
108	GO:0006096: glycolytic process	1.68E-02
109	GO:0046854: phosphatidylinositol phosphorylation	1.79E-02
110	GO:0009644: response to high light intensity	1.88E-02
111	GO:0010228: vegetative to reproductive phase transition of meristem	1.88E-02
112	GO:0006108: malate metabolic process	2.00E-02
113	GO:0006655: phosphatidylglycerol biosynthetic process	2.00E-02
114	GO:0031408: oxylipin biosynthetic process	2.00E-02
115	GO:0007030: Golgi organization	2.22E-02
116	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.22E-02
117	GO:0006833: water transport	2.45E-02
118	GO:0006972: hyperosmotic response	2.45E-02
119	GO:0042545: cell wall modification	2.45E-02
120	GO:0009750: response to fructose	2.45E-02
121	GO:0006631: fatty acid metabolic process	2.69E-02
122	GO:0009749: response to glucose	2.69E-02
123	GO:0009657: plastid organization	2.69E-02
124	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.93E-02
125	GO:0006807: nitrogen compound metabolic process	3.45E-02
126	GO:0010224: response to UV-B	3.45E-02
127	GO:0035304: regulation of protein dephosphorylation	3.45E-02
128	GO:0007017: microtubule-based process	4.28E-02
129	GO:0009853: photorespiration	4.56E-02
130	GO:0006520: cellular amino acid metabolic process	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0031409: pigment binding	0.00E+00
4	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
5	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
6	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
7	GO:0045550: geranylgeranyl reductase activity	0.00E+00
8	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
9	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
10	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
11	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
12	GO:0004802: transketolase activity	0.00E+00
13	GO:0016168: chlorophyll binding	1.25E-05
14	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.38E-05
15	GO:0009055: electron carrier activity	4.31E-04
16	GO:0051537: 2 iron, 2 sulfur cluster binding	4.32E-04
17	GO:0004795: threonine synthase activity	5.78E-04
18	GO:0004618: phosphoglycerate kinase activity	5.78E-04
19	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	5.78E-04
20	GO:0015088: copper uptake transmembrane transporter activity	5.78E-04
21	GO:0004828: serine-tRNA ligase activity	5.78E-04
22	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	5.78E-04
23	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.34E-03
24	GO:0045430: chalcone isomerase activity	1.34E-03
25	GO:0033897: ribonuclease T2 activity	2.23E-03
26	GO:0016872: intramolecular lyase activity	2.23E-03
27	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	2.23E-03
28	GO:0004765: shikimate kinase activity	3.26E-03
29	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.26E-03
30	GO:0016984: ribulose-bisphosphate carboxylase activity	3.26E-03
31	GO:0071949: FAD binding	3.26E-03
32	GO:0004332: fructose-bisphosphate aldolase activity	3.26E-03
33	GO:0030234: enzyme regulator activity	4.47E-03
34	GO:0005381: iron ion transmembrane transporter activity	4.47E-03
35	GO:0004470: malic enzyme activity	4.47E-03
36	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.47E-03
37	GO:0051287: NAD binding	5.67E-03
38	GO:0004356: glutamate-ammonia ligase activity	5.76E-03
39	GO:0051536: iron-sulfur cluster binding	5.99E-03
40	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	7.20E-03
41	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.49E-03
42	GO:0004427: inorganic diphosphatase activity	1.04E-02
43	GO:0004812: aminoacyl-tRNA ligase activity	1.50E-02
44	GO:0003690: double-stranded DNA binding	1.59E-02
45	GO:0043531: ADP binding	1.59E-02
46	GO:0042803: protein homodimerization activity	2.09E-02
47	GO:0019901: protein kinase binding	2.45E-02
48	GO:0004713: protein tyrosine kinase activity	2.45E-02
49	GO:0015035: protein disulfide oxidoreductase activity	2.79E-02
50	GO:0003735: structural constituent of ribosome	3.24E-02
51	GO:0016597: amino acid binding	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0009782: photosystem I antenna complex	0.00E+00
2	GO:0009512: cytochrome b6f complex	0.00E+00
3	GO:0009507: chloroplast	1.71E-28
4	GO:0009570: chloroplast stroma	1.03E-20
5	GO:0009535: chloroplast thylakoid membrane	2.04E-19
6	GO:0009941: chloroplast envelope	1.54E-17
7	GO:0009579: thylakoid	9.20E-15
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.17E-10
9	GO:0009543: chloroplast thylakoid lumen	9.88E-10
10	GO:0031977: thylakoid lumen	4.92E-07
11	GO:0009534: chloroplast thylakoid	2.30E-06
12	GO:0009522: photosystem I	2.07E-05
13	GO:0009523: photosystem II	8.07E-05
14	GO:0042406: extrinsic component of endoplasmic reticulum membrane	5.78E-04
15	GO:0030093: chloroplast photosystem I	5.78E-04
16	GO:0048046: apoplast	1.59E-03
17	GO:0042651: thylakoid membrane	1.78E-03
18	GO:0055028: cortical microtubule	2.23E-03
19	GO:0009508: plastid chromosome	4.47E-03
20	GO:0019898: extrinsic component of membrane	5.76E-03
21	GO:0009654: photosystem II oxygen evolving complex	7.20E-03
22	GO:0010319: stromule	1.02E-02
23	GO:0009295: nucleoid	1.59E-02
24	GO:0010287: plastoglobule	1.78E-02
25	GO:0005840: ribosome	2.05E-02
26	GO:0016020: membrane	2.31E-02
27	GO:0030529: intracellular ribonucleoprotein complex	2.82E-02
28	GO:0009706: chloroplast inner membrane	4.28E-02