co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G053322

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048564: photosystem I assembly	0.00E+00
2	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
3	GO:0043953: protein transport by the Tat complex	0.00E+00
4	GO:0000372: Group I intron splicing	0.00E+00
5	GO:0032543: mitochondrial translation	0.00E+00
6	GO:1901259: chloroplast rRNA processing	0.00E+00
7	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
8	GO:0090342: regulation of cell aging	0.00E+00
9	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
10	GO:0042780: tRNA 3'-end processing	0.00E+00
11	GO:1900865: chloroplast RNA modification	0.00E+00
12	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
13	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
14	GO:0043686: co-translational protein modification	0.00E+00
15	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
16	GO:0090391: granum assembly	0.00E+00
17	GO:0009658: chloroplast organization	9.31E-12
18	GO:0006399: tRNA metabolic process	2.49E-10
19	GO:0006364: rRNA processing	2.11E-08
20	GO:0010027: thylakoid membrane organization	4.18E-08
21	GO:0006457: protein folding	4.00E-07
22	GO:0009306: protein secretion	4.13E-07
23	GO:0006655: phosphatidylglycerol biosynthetic process	1.49E-06
24	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.69E-06
25	GO:0045038: protein import into chloroplast thylakoid membrane	5.13E-06
26	GO:0010103: stomatal complex morphogenesis	9.71E-06
27	GO:0010207: photosystem II assembly	1.81E-05
28	GO:0045036: protein targeting to chloroplast	2.84E-05
29	GO:1901671: positive regulation of superoxide dismutase activity	4.88E-05
30	GO:0016556: mRNA modification	2.81E-04
31	GO:0000373: Group II intron splicing	3.35E-04
32	GO:0006782: protoporphyrinogen IX biosynthetic process	3.35E-04
33	GO:0006779: porphyrin-containing compound biosynthetic process	3.73E-04
34	GO:0010468: regulation of gene expression	5.69E-04
35	GO:0042793: transcription from plastid promoter	6.04E-04
36	GO:0009073: aromatic amino acid family biosynthetic process	7.21E-04
37	GO:0006184: obsolete GTP catabolic process	1.16E-03
38	GO:0016226: iron-sulfur cluster assembly	1.18E-03
39	GO:0045893: positive regulation of transcription, DNA-templated	1.20E-03
40	GO:0071722: detoxification of arsenic-containing substance	1.30E-03
41	GO:0006429: leucyl-tRNA aminoacylation	1.30E-03
42	GO:0006591: ornithine metabolic process	1.30E-03
43	GO:0009959: negative gravitropism	1.30E-03
44	GO:0016050: vesicle organization	1.30E-03
45	GO:0000023: maltose metabolic process	1.46E-03
46	GO:0019252: starch biosynthetic process	1.89E-03
47	GO:0015995: chlorophyll biosynthetic process	2.54E-03
48	GO:0009407: toxin catabolic process	2.67E-03
49	GO:0019464: glycine decarboxylation via glycine cleavage system	2.91E-03
50	GO:0030308: negative regulation of cell growth	2.91E-03
51	GO:0051555: flavonol biosynthetic process	2.91E-03
52	GO:0019481: L-alanine catabolic process, by transamination	2.91E-03
53	GO:0010236: plastoquinone biosynthetic process	2.91E-03
54	GO:0010253: UDP-rhamnose biosynthetic process	2.91E-03
55	GO:0042372: phylloquinone biosynthetic process	2.91E-03
56	GO:0010192: mucilage biosynthetic process	2.91E-03
57	GO:0009642: response to light intensity	2.91E-03
58	GO:0005987: sucrose catabolic process	2.91E-03
59	GO:0010380: regulation of chlorophyll biosynthetic process	2.91E-03
60	GO:0009225: nucleotide-sugar metabolic process	2.91E-03
61	GO:0006200: obsolete ATP catabolic process	3.26E-03
62	GO:0009902: chloroplast relocation	3.29E-03
63	GO:0006546: glycine catabolic process	4.02E-03
64	GO:0043067: regulation of programmed cell death	4.97E-03
65	GO:0009231: riboflavin biosynthetic process	4.97E-03
66	GO:0019760: glucosinolate metabolic process	4.97E-03
67	GO:0000304: response to singlet oxygen	4.97E-03
68	GO:0006450: regulation of translational fidelity	4.97E-03
69	GO:0006733: oxidoreduction coenzyme metabolic process	4.97E-03
70	GO:0010038: response to metal ion	4.97E-03
71	GO:0051085: chaperone mediated protein folding requiring cofactor	4.97E-03
72	GO:0010731: protein glutathionylation	4.97E-03
73	GO:0045226: extracellular polysaccharide biosynthetic process	4.97E-03
74	GO:0016075: rRNA catabolic process	4.97E-03
75	GO:0019344: cysteine biosynthetic process	5.05E-03
76	GO:0051607: defense response to virus	5.65E-03
77	GO:0008299: isoprenoid biosynthetic process	6.58E-03
78	GO:0006228: UTP biosynthetic process	7.35E-03
79	GO:0010304: PSII associated light-harvesting complex II catabolic process	7.35E-03
80	GO:0051205: protein insertion into membrane	7.35E-03
81	GO:0009117: nucleotide metabolic process	7.35E-03
82	GO:0006183: GTP biosynthetic process	7.35E-03
83	GO:0006241: CTP biosynthetic process	7.35E-03
84	GO:0010214: seed coat development	7.35E-03
85	GO:0042026: protein refolding	7.35E-03
86	GO:0071704: organic substance metabolic process	7.35E-03
87	GO:0006165: nucleoside diphosphate phosphorylation	7.35E-03
88	GO:0019684: photosynthesis, light reaction	8.68E-03
89	GO:0010267: production of ta-siRNAs involved in RNA interference	9.86E-03
90	GO:0035196: production of miRNAs involved in gene silencing by miRNA	9.86E-03
91	GO:0019748: secondary metabolic process	1.00E-02
92	GO:0009308: amine metabolic process	1.00E-02
93	GO:0006569: tryptophan catabolic process	1.00E-02
94	GO:0010315: auxin efflux	1.00E-02
95	GO:0009772: photosynthetic electron transport in photosystem II	1.00E-02
96	GO:0009627: systemic acquired resistance	1.11E-02
97	GO:0006098: pentose-phosphate shunt	1.14E-02
98	GO:0035304: regulation of protein dephosphorylation	1.24E-02
99	GO:0000105: histidine biosynthetic process	1.30E-02
100	GO:0006749: glutathione metabolic process	1.30E-02
101	GO:0031347: regulation of defense response	1.30E-02
102	GO:0048229: gametophyte development	1.30E-02
103	GO:0009106: lipoate metabolic process	1.63E-02
104	GO:0032880: regulation of protein localization	1.63E-02
105	GO:0006766: vitamin metabolic process	1.63E-02
106	GO:0009411: response to UV	1.63E-02
107	GO:0009814: defense response, incompatible interaction	1.63E-02
108	GO:0009108: coenzyme biosynthetic process	1.63E-02
109	GO:0010583: response to cyclopentenone	1.63E-02
110	GO:0006189: 'de novo' IMP biosynthetic process	1.63E-02
111	GO:0010206: photosystem II repair	1.63E-02
112	GO:0034660: ncRNA metabolic process	1.63E-02
113	GO:0051604: protein maturation	1.98E-02
114	GO:0009585: red, far-red light phototransduction	2.36E-02
115	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.36E-02
116	GO:0045087: innate immune response	2.36E-02
117	GO:0001666: response to hypoxia	2.36E-02
118	GO:0009735: response to cytokinin	2.41E-02
119	GO:0006396: RNA processing	2.49E-02
120	GO:0000302: response to reactive oxygen species	2.76E-02
121	GO:0009684: indoleacetic acid biosynthetic process	2.76E-02
122	GO:0019761: glucosinolate biosynthetic process	3.04E-02
123	GO:0009416: response to light stimulus	3.07E-02
124	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.63E-02
125	GO:0009409: response to cold	3.92E-02
126	GO:0048481: plant ovule development	3.99E-02
127	GO:0006508: proteolysis	4.49E-02
128	GO:0009723: response to ethylene	4.52E-02
129	GO:0031408: oxylipin biosynthetic process	4.59E-02
130	GO:0006414: translational elongation	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
3	GO:0042586: peptide deformylase activity	0.00E+00
4	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
5	GO:0051743: red chlorophyll catabolite reductase activity	0.00E+00
6	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
7	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
8	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
9	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
10	GO:0003919: FMN adenylyltransferase activity	0.00E+00
11	GO:0005048: signal sequence binding	0.00E+00
12	GO:0003879: ATP phosphoribosyltransferase activity	0.00E+00
13	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
14	GO:0004853: uroporphyrinogen decarboxylase activity	4.88E-05
15	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	4.88E-05
16	GO:0000774: adenyl-nucleotide exchange factor activity	1.59E-04
17	GO:0051082: unfolded protein binding	1.89E-04
18	GO:0008565: protein transporter activity	2.38E-04
19	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.24E-03
20	GO:0004525: ribonuclease III activity	1.24E-03
21	GO:0050377: UDP-glucose 4,6-dehydratase activity	1.30E-03
22	GO:0004823: leucine-tRNA ligase activity	1.30E-03
23	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.30E-03
24	GO:0010280: UDP-L-rhamnose synthase activity	1.30E-03
25	GO:0004362: glutathione-disulfide reductase activity	1.30E-03
26	GO:0004585: ornithine carbamoyltransferase activity	1.30E-03
27	GO:0051087: chaperone binding	1.66E-03
28	GO:0004252: serine-type endopeptidase activity	1.76E-03
29	GO:0031072: heat shock protein binding	2.01E-03
30	GO:0005525: GTP binding	2.70E-03
31	GO:0004462: lactoylglutathione lyase activity	2.91E-03
32	GO:0005496: steroid binding	2.91E-03
33	GO:0016630: protochlorophyllide reductase activity	2.91E-03
34	GO:0047134: protein-disulfide reductase activity	2.91E-03
35	GO:0046914: transition metal ion binding	3.30E-03
36	GO:0016743: carboxyl- or carbamoyltransferase activity	4.97E-03
37	GO:0008460: dTDP-glucose 4,6-dehydratase activity	4.97E-03
38	GO:0008831: dTDP-4-dehydrorhamnose reductase activity	4.97E-03
39	GO:0003959: NADPH dehydrogenase activity	4.97E-03
40	GO:0016887: ATPase activity	7.17E-03
41	GO:0004765: shikimate kinase activity	7.35E-03
42	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	7.35E-03
43	GO:0004550: nucleoside diphosphate kinase activity	7.35E-03
44	GO:0003913: DNA photolyase activity	7.35E-03
45	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	7.35E-03
46	GO:0070569: uridylyltransferase activity	7.35E-03
47	GO:0004659: prenyltransferase activity	7.35E-03
48	GO:0016831: carboxy-lyase activity	7.60E-03
49	GO:0005507: copper ion binding	9.47E-03
50	GO:0016868: intramolecular transferase activity, phosphotransferases	1.00E-02
51	GO:0016987: sigma factor activity	1.00E-02
52	GO:0003924: GTPase activity	1.18E-02
53	GO:0008173: RNA methyltransferase activity	1.30E-02
54	GO:0016817: hydrolase activity, acting on acid anhydrides	1.30E-02
55	GO:0004222: metalloendopeptidase activity	1.69E-02
56	GO:0008312: 7S RNA binding	1.98E-02
57	GO:0043022: ribosome binding	1.98E-02
58	GO:0004575: sucrose alpha-glucosidase activity	1.98E-02
59	GO:0008266: poly(U) RNA binding	2.36E-02
60	GO:0000166: nucleotide binding	2.38E-02
61	GO:0000287: magnesium ion binding	2.67E-02
62	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.76E-02
63	GO:0008236: serine-type peptidase activity	2.82E-02
64	GO:0003746: translation elongation factor activity	3.50E-02
65	GO:0003690: double-stranded DNA binding	3.63E-02
66	GO:0003723: RNA binding	4.14E-02

Rank	GO Term	Adjusted P value
1	GO:0042646: plastid nucleoid	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
4	GO:0009507: chloroplast	9.53E-30
5	GO:0009570: chloroplast stroma	2.24E-19
6	GO:0009941: chloroplast envelope	4.50E-14
7	GO:0009535: chloroplast thylakoid membrane	6.71E-13
8	GO:0009579: thylakoid	7.14E-08
9	GO:0009532: plastid stroma	2.28E-06
10	GO:0009295: nucleoid	1.92E-05
11	GO:0009534: chloroplast thylakoid	4.60E-04
12	GO:0009840: chloroplastic endopeptidase Clp complex	5.69E-04
13	GO:0080085: signal recognition particle, chloroplast targeting	1.30E-03
14	GO:0009526: plastid envelope	1.30E-03
15	GO:0005960: glycine cleavage complex	1.30E-03
16	GO:0044445: cytosolic part	1.30E-03
17	GO:0009533: chloroplast stromal thylakoid	2.91E-03
18	GO:0005759: mitochondrial matrix	3.29E-03
19	GO:0010319: stromule	6.12E-03
20	GO:0031977: thylakoid lumen	6.71E-03
21	GO:0009536: plastid	7.69E-03
22	GO:0009508: plastid chromosome	1.00E-02
23	GO:0019013: viral nucleocapsid	1.24E-02
24	GO:0019898: extrinsic component of membrane	1.30E-02
25	GO:0009654: photosystem II oxygen evolving complex	1.63E-02
26	GO:0048500: signal recognition particle	1.63E-02
27	GO:0009706: chloroplast inner membrane	1.69E-02
28	GO:0005739: mitochondrion	4.13E-02
29	GO:0009543: chloroplast thylakoid lumen	4.59E-02