co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G048907

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030243: cellulose metabolic process	0.00E+00
2	GO:0030388: fructose 1,6-bisphosphate metabolic process	0.00E+00
3	GO:0055070: copper ion homeostasis	0.00E+00
4	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
5	GO:0042550: photosystem I stabilization	0.00E+00
6	GO:2000505: regulation of energy homeostasis	0.00E+00
7	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
8	GO:0042221: response to chemical	0.00E+00
9	GO:0042549: photosystem II stabilization	0.00E+00
10	GO:0015979: photosynthesis	7.09E-21
11	GO:0010207: photosystem II assembly	2.41E-18
12	GO:0009773: photosynthetic electron transport in photosystem I	2.07E-14
13	GO:0043085: positive regulation of catalytic activity	3.17E-12
14	GO:0006364: rRNA processing	1.80E-10
15	GO:0019252: starch biosynthetic process	1.70E-09
16	GO:0006098: pentose-phosphate shunt	4.73E-09
17	GO:0070838: divalent metal ion transport	5.73E-09
18	GO:0000023: maltose metabolic process	1.35E-08
19	GO:0030003: cellular cation homeostasis	5.05E-08
20	GO:0009657: plastid organization	1.40E-07
21	GO:0010027: thylakoid membrane organization	6.28E-07
22	GO:0015995: chlorophyll biosynthetic process	1.21E-06
23	GO:0009637: response to blue light	3.65E-06
24	GO:0010114: response to red light	5.37E-06
25	GO:0010218: response to far red light	7.68E-06
26	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	8.75E-06
27	GO:0010103: stomatal complex morphogenesis	1.04E-05
28	GO:0035304: regulation of protein dephosphorylation	1.34E-05
29	GO:0015977: carbon fixation	1.58E-05
30	GO:0006814: sodium ion transport	3.43E-05
31	GO:0010196: nonphotochemical quenching	7.06E-05
32	GO:0009595: detection of biotic stimulus	7.06E-05
33	GO:0019344: cysteine biosynthetic process	7.33E-05
34	GO:0016117: carotenoid biosynthetic process	7.33E-05
35	GO:0019761: glucosinolate biosynthetic process	8.47E-05
36	GO:0009772: photosynthetic electron transport in photosystem II	1.27E-04
37	GO:0043900: regulation of multi-organism process	1.27E-04
38	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.07E-04
39	GO:0042742: defense response to bacterium	2.13E-04
40	GO:0046777: protein autophosphorylation	2.75E-04
41	GO:0015986: ATP synthesis coupled proton transport	3.21E-04
42	GO:0010310: regulation of hydrogen peroxide metabolic process	4.05E-04
43	GO:0071482: cellular response to light stimulus	4.99E-04
44	GO:0009590: detection of gravity	4.99E-04
45	GO:0009768: photosynthesis, light harvesting in photosystem I	4.99E-04
46	GO:0019676: ammonia assimilation cycle	4.99E-04
47	GO:0009902: chloroplast relocation	5.51E-04
48	GO:0009697: salicylic acid biosynthetic process	8.42E-04
49	GO:0016556: mRNA modification	8.42E-04
50	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.03E-03
51	GO:0006875: cellular metal ion homeostasis	1.16E-03
52	GO:0006108: malate metabolic process	1.44E-03
53	GO:0080167: response to karrikin	1.55E-03
54	GO:0019760: glucosinolate metabolic process	1.94E-03
55	GO:0006733: oxidoreduction coenzyme metabolic process	1.94E-03
56	GO:0051289: protein homotetramerization	1.94E-03
57	GO:0009624: response to nematode	2.16E-03
58	GO:0019684: photosynthesis, light reaction	2.19E-03
59	GO:0009664: plant-type cell wall organization	2.47E-03
60	GO:0009966: regulation of signal transduction	2.47E-03
61	GO:0010155: regulation of proton transport	2.47E-03
62	GO:0045454: cell redox homeostasis	2.50E-03
63	GO:0009409: response to cold	2.64E-03
64	GO:0006612: protein targeting to membrane	2.77E-03
65	GO:0010200: response to chitin	2.77E-03
66	GO:0050821: protein stabilization	2.81E-03
67	GO:0016485: protein processing	2.81E-03
68	GO:0071704: organic substance metabolic process	2.81E-03
69	GO:0046034: ATP metabolic process	2.81E-03
70	GO:0019216: regulation of lipid metabolic process	2.81E-03
71	GO:0051260: protein homooligomerization	2.81E-03
72	GO:0009117: nucleotide metabolic process	2.81E-03
73	GO:0045037: protein import into chloroplast stroma	2.81E-03
74	GO:0015976: carbon utilization	2.81E-03
75	GO:0010363: regulation of plant-type hypersensitive response	3.11E-03
76	GO:0009867: jasmonic acid mediated signaling pathway	3.47E-03
77	GO:0009817: defense response to fungus, incompatible interaction	3.47E-03
78	GO:0031348: negative regulation of defense response	3.47E-03
79	GO:0006796: phosphate-containing compound metabolic process	3.85E-03
80	GO:0034755: iron ion transmembrane transport	3.85E-03
81	GO:0019748: secondary metabolic process	3.85E-03
82	GO:0046688: response to copper ion	4.98E-03
83	GO:0017148: negative regulation of translation	4.98E-03
84	GO:0000165: MAPK cascade	5.10E-03
85	GO:0009108: coenzyme biosynthetic process	6.20E-03
86	GO:0010206: photosystem II repair	6.20E-03
87	GO:0009106: lipoate metabolic process	6.20E-03
88	GO:0010205: photoinhibition	6.20E-03
89	GO:0006766: vitamin metabolic process	6.20E-03
90	GO:0009411: response to UV	6.20E-03
91	GO:0006662: glycerol ether metabolic process	6.55E-03
92	GO:0005985: sucrose metabolic process	7.53E-03
93	GO:0046939: nucleotide phosphorylation	7.53E-03
94	GO:0000272: polysaccharide catabolic process	7.53E-03
95	GO:0006099: tricarboxylic acid cycle	8.21E-03
96	GO:0009072: aromatic amino acid family metabolic process	8.93E-03
97	GO:0055114: oxidation-reduction process	9.53E-03
98	GO:0005983: starch catabolic process	1.04E-02
99	GO:0009832: plant-type cell wall biogenesis	1.04E-02
100	GO:0009658: chloroplast organization	1.07E-02
101	GO:0006006: glucose metabolic process	1.20E-02
102	GO:0006754: ATP biosynthetic process	1.20E-02
103	GO:0006354: DNA-templated transcription, elongation	1.20E-02
104	GO:0006096: glycolytic process	1.29E-02
105	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.37E-02
106	GO:0006546: glycine catabolic process	1.37E-02
107	GO:0009765: photosynthesis, light harvesting	1.37E-02
108	GO:0022900: electron transport chain	1.61E-02
109	GO:0009767: photosynthetic electron transport chain	1.72E-02
110	GO:0031408: oxylipin biosynthetic process	1.72E-02
111	GO:0044262: cellular carbohydrate metabolic process	1.72E-02
112	GO:0006636: unsaturated fatty acid biosynthetic process	1.91E-02
113	GO:0009750: response to fructose	2.11E-02
114	GO:0016049: cell growth	2.11E-02
115	GO:0006833: water transport	2.11E-02
116	GO:0015992: proton transport	2.31E-02
117	GO:0009749: response to glucose	2.31E-02
118	GO:0016126: sterol biosynthetic process	2.31E-02
119	GO:0050832: defense response to fungus	2.46E-02
120	GO:0018298: protein-chromophore linkage	2.53E-02
121	GO:0006352: DNA-templated transcription, initiation	2.74E-02
122	GO:0010193: response to ozone	2.74E-02
123	GO:0006139: nucleobase-containing compound metabolic process	2.97E-02
124	GO:0009695: jasmonic acid biosynthetic process	3.20E-02
125	GO:0015991: ATP hydrolysis coupled proton transport	3.43E-02
126	GO:0009853: photorespiration	3.93E-02
127	GO:0000413: protein peptidyl-prolyl isomerization	4.18E-02
128	GO:0009735: response to cytokinin	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0015131: oxaloacetate transmembrane transporter activity	0.00E+00
2	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
3	GO:0009496: plastoquinol--plastocyanin reductase activity	0.00E+00
4	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
5	GO:0010242: oxygen evolving activity	0.00E+00
6	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
7	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
8	GO:0004614: phosphoglucomutase activity	0.00E+00
9	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
10	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
11	GO:0019200: carbohydrate kinase activity	0.00E+00
12	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
13	GO:0051738: xanthophyll binding	0.00E+00
14	GO:0016168: chlorophyll binding	8.05E-06
15	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	8.75E-06
16	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.39E-05
17	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	4.74E-05
18	GO:0004332: fructose-bisphosphate aldolase activity	7.06E-05
19	GO:0016984: ribulose-bisphosphate carboxylase activity	7.06E-05
20	GO:0015140: malate transmembrane transporter activity	4.99E-04
21	GO:0016679: oxidoreductase activity, acting on diphenols and related substances as donors	4.99E-04
22	GO:0004618: phosphoglycerate kinase activity	4.99E-04
23	GO:0015088: copper uptake transmembrane transporter activity	4.99E-04
24	GO:0042578: phosphoric ester hydrolase activity	5.32E-04
25	GO:0008266: poly(U) RNA binding	5.32E-04
26	GO:0015035: protein disulfide oxidoreductase activity	5.92E-04
27	GO:0016829: lyase activity	8.30E-04
28	GO:0009055: electron carrier activity	9.95E-04
29	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.16E-03
30	GO:0051920: peroxiredoxin activity	1.16E-03
31	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	1.94E-03
32	GO:0016209: antioxidant activity	2.81E-03
33	GO:0008964: phosphoenolpyruvate carboxylase activity	2.81E-03
34	GO:0051537: 2 iron, 2 sulfur cluster binding	3.47E-03
35	GO:0005215: transporter activity	3.65E-03
36	GO:0004470: malic enzyme activity	3.85E-03
37	GO:0004017: adenylate kinase activity	3.85E-03
38	GO:0016868: intramolecular transferase activity, phosphotransferases	3.85E-03
39	GO:0016987: sigma factor activity	3.85E-03
40	GO:0005381: iron ion transmembrane transporter activity	3.85E-03
41	GO:0051287: NAD binding	4.33E-03
42	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	5.92E-03
43	GO:0016615: malate dehydrogenase activity	6.20E-03
44	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	6.20E-03
45	GO:0004089: carbonate dehydratase activity	6.20E-03
46	GO:0019201: nucleotide kinase activity	6.20E-03
47	GO:0008121: ubiquinol-cytochrome-c reductase activity	6.20E-03
48	GO:0019205: nucleobase-containing compound kinase activity	6.20E-03
49	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	7.53E-03
50	GO:0008047: enzyme activator activity	7.53E-03
51	GO:0030060: L-malate dehydrogenase activity	7.53E-03
52	GO:0016776: phosphotransferase activity, phosphate group as acceptor	8.93E-03
53	GO:0004427: inorganic diphosphatase activity	8.93E-03
54	GO:0046914: transition metal ion binding	1.20E-02
55	GO:0048037: cofactor binding	1.37E-02
56	GO:0003690: double-stranded DNA binding	1.37E-02
57	GO:0000287: magnesium ion binding	1.54E-02
58	GO:0042803: protein homodimerization activity	1.69E-02
59	GO:0004713: protein tyrosine kinase activity	2.11E-02
60	GO:0008080: N-acetyltransferase activity	2.31E-02
61	GO:0051536: iron-sulfur cluster binding	2.57E-02
62	GO:0015297: antiporter activity	2.97E-02
63	GO:0015078: hydrogen ion transmembrane transporter activity	3.43E-02
64	GO:0004222: metalloendopeptidase activity	3.68E-02
65	GO:0016597: amino acid binding	3.93E-02
66	GO:0051539: 4 iron, 4 sulfur cluster binding	4.44E-02
67	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.71E-02
68	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0009512: cytochrome b6f complex	0.00E+00
2	GO:0030093: chloroplast photosystem I	0.00E+00
3	GO:0009279: cell outer membrane	0.00E+00
4	GO:0009507: chloroplast	5.04E-34
5	GO:0009579: thylakoid	9.29E-29
6	GO:0009535: chloroplast thylakoid membrane	1.57E-27
7	GO:0009941: chloroplast envelope	6.44E-20
8	GO:0009522: photosystem I	2.07E-14
9	GO:0010287: plastoglobule	2.98E-14
10	GO:0031977: thylakoid lumen	8.95E-14
11	GO:0009534: chloroplast thylakoid	5.26E-11
12	GO:0009538: photosystem I reaction center	9.90E-10
13	GO:0009570: chloroplast stroma	3.67E-09
14	GO:0009543: chloroplast thylakoid lumen	3.98E-08
15	GO:0048046: apoplast	7.65E-07
16	GO:0009523: photosystem II	2.41E-06
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.00E-06
18	GO:0019898: extrinsic component of membrane	3.00E-06
19	GO:0010319: stromule	5.37E-06
20	GO:0009654: photosystem II oxygen evolving complex	5.75E-06
21	GO:0016020: membrane	3.68E-05
22	GO:0009508: plastid chromosome	1.27E-04
23	GO:0009706: chloroplast inner membrane	4.27E-04
24	GO:0009517: PSII associated light-harvesting complex II	4.99E-04
25	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	4.99E-04
26	GO:0009295: nucleoid	1.03E-03
27	GO:0009533: chloroplast stromal thylakoid	1.16E-03
28	GO:0042651: thylakoid membrane	1.44E-03
29	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	6.20E-03
30	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	7.53E-03