co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G042683

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042780: tRNA 3'-end processing	0.00E+00
2	GO:1900865: chloroplast RNA modification	0.00E+00
3	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
4	GO:0010157: response to chlorate	0.00E+00
5	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
6	GO:0043043: peptide biosynthetic process	0.00E+00
7	GO:0043686: co-translational protein modification	0.00E+00
8	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
9	GO:0042407: cristae formation	0.00E+00
10	GO:0090391: granum assembly	0.00E+00
11	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
12	GO:0043953: protein transport by the Tat complex	0.00E+00
13	GO:0000372: Group I intron splicing	0.00E+00
14	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
15	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
16	GO:0032543: mitochondrial translation	0.00E+00
17	GO:0046506: sulfolipid biosynthetic process	0.00E+00
18	GO:0010117: photoprotection	0.00E+00
19	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
20	GO:1901259: chloroplast rRNA processing	0.00E+00
21	GO:0090342: regulation of cell aging	0.00E+00
22	GO:0032544: plastid translation	0.00E+00
23	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
24	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
25	GO:0009658: chloroplast organization	2.05E-18
26	GO:0010027: thylakoid membrane organization	3.04E-18
27	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.01E-15
28	GO:0042793: transcription from plastid promoter	5.33E-12
29	GO:0045036: protein targeting to chloroplast	1.34E-10
30	GO:0009902: chloroplast relocation	2.64E-10
31	GO:0006364: rRNA processing	3.47E-10
32	GO:0006655: phosphatidylglycerol biosynthetic process	1.48E-08
33	GO:0010207: photosystem II assembly	3.40E-08
34	GO:0016226: iron-sulfur cluster assembly	9.29E-08
35	GO:0045038: protein import into chloroplast thylakoid membrane	1.47E-07
36	GO:0006399: tRNA metabolic process	2.96E-07
37	GO:0035304: regulation of protein dephosphorylation	3.78E-07
38	GO:0045893: positive regulation of transcription, DNA-templated	7.68E-07
39	GO:0006418: tRNA aminoacylation for protein translation	3.02E-06
40	GO:0006779: porphyrin-containing compound biosynthetic process	4.98E-06
41	GO:0006457: protein folding	7.42E-06
42	GO:0006353: DNA-templated transcription, termination	2.19E-05
43	GO:0009073: aromatic amino acid family biosynthetic process	6.63E-05
44	GO:0016556: mRNA modification	6.98E-05
45	GO:0042372: phylloquinone biosynthetic process	1.34E-04
46	GO:1901671: positive regulation of superoxide dismutase activity	1.34E-04
47	GO:0048481: plant ovule development	2.04E-04
48	GO:0006733: oxidoreduction coenzyme metabolic process	4.10E-04
49	GO:0009247: glycolipid biosynthetic process	4.10E-04
50	GO:0015995: chlorophyll biosynthetic process	4.81E-04
51	GO:0006184: obsolete GTP catabolic process	5.30E-04
52	GO:0019344: cysteine biosynthetic process	5.87E-04
53	GO:0010103: stomatal complex morphogenesis	6.90E-04
54	GO:0006782: protoporphyrinogen IX biosynthetic process	8.23E-04
55	GO:0009117: nucleotide metabolic process	8.23E-04
56	GO:0045037: protein import into chloroplast stroma	8.23E-04
57	GO:0019375: galactolipid biosynthetic process	8.23E-04
58	GO:0006098: pentose-phosphate shunt	1.05E-03
59	GO:0006546: glycine catabolic process	1.19E-03
60	GO:0009308: amine metabolic process	1.38E-03
61	GO:0000096: sulfur amino acid metabolic process	1.38E-03
62	GO:0019748: secondary metabolic process	1.38E-03
63	GO:0010468: regulation of gene expression	1.38E-03
64	GO:0009793: embryo development ending in seed dormancy	1.60E-03
65	GO:0009306: protein secretion	2.06E-03
66	GO:0006429: leucyl-tRNA aminoacylation	2.31E-03
67	GO:0006591: ornithine metabolic process	2.31E-03
68	GO:0008361: regulation of cell size	2.31E-03
69	GO:0006434: seryl-tRNA aminoacylation	2.31E-03
70	GO:0010116: positive regulation of abscisic acid biosynthetic process	2.31E-03
71	GO:0006788: heme oxidation	2.31E-03
72	GO:0006433: prolyl-tRNA aminoacylation	2.31E-03
73	GO:0006423: cysteinyl-tRNA aminoacylation	2.31E-03
74	GO:0009069: serine family amino acid metabolic process	2.31E-03
75	GO:0071722: detoxification of arsenic-containing substance	2.31E-03
76	GO:0006430: lysyl-tRNA aminoacylation	2.31E-03
77	GO:0006412: translation	2.55E-03
78	GO:0033014: tetrapyrrole biosynthetic process	2.87E-03
79	GO:0010206: photosystem II repair	2.87E-03
80	GO:0034660: ncRNA metabolic process	2.87E-03
81	GO:0019538: protein metabolic process	2.87E-03
82	GO:0009106: lipoate metabolic process	2.87E-03
83	GO:0006766: vitamin metabolic process	2.87E-03
84	GO:0009108: coenzyme biosynthetic process	2.87E-03
85	GO:0006200: obsolete ATP catabolic process	3.02E-03
86	GO:0030154: cell differentiation	3.27E-03
87	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.04E-03
88	GO:0009773: photosynthetic electron transport in photosystem I	5.25E-03
89	GO:0010024: phytochromobilin biosynthetic process	5.31E-03
90	GO:0009102: biotin biosynthetic process	5.31E-03
91	GO:0009642: response to light intensity	5.31E-03
92	GO:0048653: anther development	5.31E-03
93	GO:0010380: regulation of chlorophyll biosynthetic process	5.31E-03
94	GO:0044272: sulfur compound biosynthetic process	5.31E-03
95	GO:0019464: glycine decarboxylation via glycine cleavage system	5.31E-03
96	GO:0006432: phenylalanyl-tRNA aminoacylation	5.31E-03
97	GO:0019481: L-alanine catabolic process, by transamination	5.31E-03
98	GO:0010236: plastoquinone biosynthetic process	5.31E-03
99	GO:0010109: regulation of photosynthesis	5.31E-03
100	GO:0009695: jasmonic acid biosynthetic process	6.04E-03
101	GO:0009407: toxin catabolic process	6.38E-03
102	GO:0006354: DNA-templated transcription, elongation	7.88E-03
103	GO:0006450: regulation of translational fidelity	9.07E-03
104	GO:0010038: response to metal ion	9.07E-03
105	GO:0051085: chaperone mediated protein folding requiring cofactor	9.07E-03
106	GO:0010731: protein glutathionylation	9.07E-03
107	GO:0016075: rRNA catabolic process	9.07E-03
108	GO:0006431: methionyl-tRNA aminoacylation	9.07E-03
109	GO:0043067: regulation of programmed cell death	9.07E-03
110	GO:0009231: riboflavin biosynthetic process	9.07E-03
111	GO:0015867: ATP transport	9.07E-03
112	GO:0000304: response to singlet oxygen	9.07E-03
113	GO:0010228: vegetative to reproductive phase transition of meristem	1.04E-02
114	GO:0009735: response to cytokinin	1.24E-02
115	GO:0031408: oxylipin biosynthetic process	1.34E-02
116	GO:0051607: defense response to virus	1.34E-02
117	GO:0007389: pattern specification process	1.35E-02
118	GO:0000373: Group II intron splicing	1.35E-02
119	GO:0030259: lipid glycosylation	1.35E-02
120	GO:0042026: protein refolding	1.35E-02
121	GO:0006165: nucleoside diphosphate phosphorylation	1.35E-02
122	GO:0019216: regulation of lipid metabolic process	1.35E-02
123	GO:0006228: UTP biosynthetic process	1.35E-02
124	GO:0051205: protein insertion into membrane	1.35E-02
125	GO:0006183: GTP biosynthetic process	1.35E-02
126	GO:0009098: leucine biosynthetic process	1.35E-02
127	GO:0006241: CTP biosynthetic process	1.35E-02
128	GO:0008299: isoprenoid biosynthetic process	1.57E-02
129	GO:0009790: embryo development	1.67E-02
130	GO:0042545: cell wall modification	1.81E-02
131	GO:0006569: tryptophan catabolic process	1.85E-02
132	GO:0009089: lysine biosynthetic process via diaminopimelate	1.85E-02
133	GO:0009772: photosynthetic electron transport in photosystem II	1.85E-02
134	GO:0006081: cellular aldehyde metabolic process	1.85E-02
135	GO:0006508: proteolysis	2.02E-02
136	GO:0019684: photosynthesis, light reaction	2.07E-02
137	GO:0009657: plastid organization	2.07E-02
138	GO:0035196: production of miRNAs involved in gene silencing by miRNA	2.34E-02
139	GO:0044267: cellular protein metabolic process	2.34E-02
140	GO:0010267: production of ta-siRNAs involved in RNA interference	2.34E-02
141	GO:0000023: maltose metabolic process	2.38E-02
142	GO:0007005: mitochondrion organization	2.40E-02
143	GO:0006749: glutathione metabolic process	2.40E-02
144	GO:0031347: regulation of defense response	2.40E-02
145	GO:0009627: systemic acquired resistance	2.64E-02
146	GO:0010583: response to cyclopentenone	3.01E-02
147	GO:0006414: translational elongation	3.01E-02
148	GO:0006189: 'de novo' IMP biosynthetic process	3.01E-02
149	GO:0009926: auxin polar transport	3.01E-02
150	GO:0010205: photoinhibition	3.01E-02
151	GO:0032880: regulation of protein localization	3.01E-02
152	GO:0009704: de-etiolation	3.01E-02
153	GO:0009411: response to UV	3.01E-02
154	GO:0042742: defense response to bacterium	3.42E-02
155	GO:0043039: tRNA aminoacylation	3.67E-02
156	GO:0009082: branched-chain amino acid biosynthetic process	3.67E-02
157	GO:0051604: protein maturation	3.67E-02
158	GO:0009409: response to cold	4.03E-02
159	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.37E-02
160	GO:0040007: growth	4.37E-02
161	GO:0010015: root morphogenesis	4.37E-02
162	GO:0001666: response to hypoxia	4.37E-02
163	GO:0009072: aromatic amino acid family metabolic process	4.37E-02
164	GO:0009585: red, far-red light phototransduction	4.37E-02
165	GO:0009408: response to heat	4.63E-02
166	GO:0009965: leaf morphogenesis	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
2	GO:0003919: FMN adenylyltransferase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0010285: L,L-diaminopimelate aminotransferase activity	0.00E+00
5	GO:0004076: biotin synthase activity	0.00E+00
6	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
7	GO:0046408: chlorophyll synthetase activity	0.00E+00
8	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
9	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
10	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
11	GO:0042586: peptide deformylase activity	0.00E+00
12	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
13	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
14	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
15	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
16	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
17	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
18	GO:0004252: serine-type endopeptidase activity	2.07E-06
19	GO:0004812: aminoacyl-tRNA ligase activity	4.87E-06
20	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.34E-04
21	GO:0004853: uroporphyrinogen decarboxylase activity	1.34E-04
22	GO:0000774: adenyl-nucleotide exchange factor activity	4.10E-04
23	GO:0016209: antioxidant activity	8.23E-04
24	GO:0004659: prenyltransferase activity	8.23E-04
25	GO:0051082: unfolded protein binding	1.57E-03
26	GO:0005507: copper ion binding	1.57E-03
27	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	2.31E-03
28	GO:0004831: tyrosine-tRNA ligase activity	2.31E-03
29	GO:0035250: UDP-galactosyltransferase activity	2.31E-03
30	GO:0004362: glutathione-disulfide reductase activity	2.31E-03
31	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	2.31E-03
32	GO:0031177: phosphopantetheine binding	2.31E-03
33	GO:0008194: UDP-glycosyltransferase activity	2.31E-03
34	GO:0004585: ornithine carbamoyltransferase activity	2.31E-03
35	GO:0008146: sulfotransferase activity	2.31E-03
36	GO:0004817: cysteine-tRNA ligase activity	2.31E-03
37	GO:0004824: lysine-tRNA ligase activity	2.31E-03
38	GO:0004827: proline-tRNA ligase activity	2.31E-03
39	GO:0004828: serine-tRNA ligase activity	2.31E-03
40	GO:0016851: magnesium chelatase activity	2.31E-03
41	GO:0004823: leucine-tRNA ligase activity	2.31E-03
42	GO:0045174: glutathione dehydrogenase (ascorbate) activity	2.31E-03
43	GO:0003862: 3-isopropylmalate dehydrogenase activity	2.31E-03
44	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	2.87E-03
45	GO:0051087: chaperone binding	3.89E-03
46	GO:0008312: 7S RNA binding	3.89E-03
47	GO:0051920: peroxiredoxin activity	5.31E-03
48	GO:0016630: protochlorophyllide reductase activity	5.31E-03
49	GO:0047134: protein-disulfide reductase activity	5.31E-03
50	GO:0004826: phenylalanine-tRNA ligase activity	5.31E-03
51	GO:0004462: lactoylglutathione lyase activity	5.31E-03
52	GO:0005347: ATP transmembrane transporter activity	5.31E-03
53	GO:0045485: omega-6 fatty acid desaturase activity	5.31E-03
54	GO:0004392: heme oxygenase (decyclizing) activity	5.31E-03
55	GO:0031072: heat shock protein binding	6.04E-03
56	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	6.38E-03
57	GO:0016887: ATPase activity	7.55E-03
58	GO:0046914: transition metal ion binding	7.88E-03
59	GO:0003959: NADPH dehydrogenase activity	9.07E-03
60	GO:0004825: methionine-tRNA ligase activity	9.07E-03
61	GO:0016743: carboxyl- or carbamoyltransferase activity	9.07E-03
62	GO:0003924: GTPase activity	9.59E-03
63	GO:0003735: structural constituent of ribosome	9.60E-03
64	GO:0005525: GTP binding	1.06E-02
65	GO:0004550: nucleoside diphosphate kinase activity	1.35E-02
66	GO:0003913: DNA photolyase activity	1.35E-02
67	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	1.35E-02
68	GO:0070569: uridylyltransferase activity	1.35E-02
69	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	1.35E-02
70	GO:0004765: shikimate kinase activity	1.35E-02
71	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	1.35E-02
72	GO:0008233: peptidase activity	1.40E-02
73	GO:0008236: serine-type peptidase activity	1.52E-02
74	GO:0048038: quinone binding	1.57E-02
75	GO:0016831: carboxy-lyase activity	1.81E-02
76	GO:0016987: sigma factor activity	1.85E-02
77	GO:0003746: translation elongation factor activity	2.01E-02
78	GO:0008173: RNA methyltransferase activity	2.40E-02
79	GO:0004525: ribonuclease III activity	3.01E-02
80	GO:0008565: protein transporter activity	3.29E-02
81	GO:0003723: RNA binding	3.65E-02
82	GO:0043022: ribosome binding	3.67E-02
83	GO:0005524: ATP binding	4.33E-02
84	GO:0019843: rRNA binding	4.40E-02
85	GO:0042803: protein homodimerization activity	4.54E-02
86	GO:0000166: nucleotide binding	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0009526: plastid envelope	0.00E+00
3	GO:0080085: signal recognition particle, chloroplast targeting	0.00E+00
4	GO:0042646: plastid nucleoid	0.00E+00
5	GO:0055035: plastid thylakoid membrane	0.00E+00
6	GO:0009507: chloroplast	6.28E-55
7	GO:0009570: chloroplast stroma	1.75E-39
8	GO:0009941: chloroplast envelope	2.23E-31
9	GO:0009532: plastid stroma	2.62E-11
10	GO:0009535: chloroplast thylakoid membrane	5.31E-11
11	GO:0009579: thylakoid	1.41E-10
12	GO:0009840: chloroplastic endopeptidase Clp complex	4.14E-09
13	GO:0009534: chloroplast thylakoid	7.87E-05
14	GO:0009706: chloroplast inner membrane	2.00E-04
15	GO:0005840: ribosome	6.06E-04
16	GO:0009536: plastid	1.17E-03
17	GO:0009295: nucleoid	1.19E-03
18	GO:0005960: glycine cleavage complex	2.31E-03
19	GO:0019867: outer membrane	2.31E-03
20	GO:0000311: plastid large ribosomal subunit	2.31E-03
21	GO:0048500: signal recognition particle	2.87E-03
22	GO:0009533: chloroplast stromal thylakoid	5.31E-03
23	GO:0005759: mitochondrial matrix	9.98E-03
24	GO:0030529: intracellular ribonucleoprotein complex	1.06E-02
25	GO:0042651: thylakoid membrane	1.34E-02
26	GO:0010319: stromule	1.84E-02
27	GO:0009707: chloroplast outer membrane	1.85E-02
28	GO:0019898: extrinsic component of membrane	2.40E-02
29	GO:0048046: apoplast	2.49E-02
30	GO:0019013: viral nucleocapsid	2.95E-02
31	GO:0009654: photosystem II oxygen evolving complex	3.01E-02
32	GO:0005739: mitochondrion	3.24E-02