co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G041822

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043137: DNA replication, removal of RNA primer	0.00E+00
2	GO:0006233: dTDP biosynthetic process	0.00E+00
3	GO:0018022: peptidyl-lysine methylation	0.00E+00
4	GO:0010165: response to X-ray	0.00E+00
5	GO:0045951: positive regulation of mitotic recombination	0.00E+00
6	GO:0006260: DNA replication	1.26E-05
7	GO:0048519: negative regulation of biological process	8.95E-05
8	GO:0010216: maintenance of DNA methylation	8.95E-05
9	GO:0000917: barrier septum assembly	8.95E-05
10	GO:0016571: histone methylation	1.01E-04
11	GO:0007062: sister chromatid cohesion	1.70E-04
12	GO:0042547: cell wall modification involved in multidimensional cell growth	2.26E-04
13	GO:0009956: radial pattern formation	2.26E-04
14	GO:0009755: hormone-mediated signaling pathway	2.26E-04
15	GO:0006471: protein ADP-ribosylation	3.93E-04
16	GO:0007094: mitotic spindle assembly checkpoint	3.93E-04
17	GO:0006281: DNA repair	5.60E-04
18	GO:0008356: asymmetric cell division	5.86E-04
19	GO:0007049: cell cycle	5.89E-04
20	GO:0048366: leaf development	6.93E-04
21	GO:0009887: animal organ morphogenesis	8.01E-04
22	GO:0048439: flower morphogenesis	8.01E-04
23	GO:0051276: chromosome organization	1.04E-03
24	GO:0055072: iron ion homeostasis	1.29E-03
25	GO:0009934: regulation of meristem structural organization	1.29E-03
26	GO:0008283: cell proliferation	1.42E-03
27	GO:0030245: cellulose catabolic process	1.56E-03
28	GO:0010074: maintenance of meristem identity	1.56E-03
29	GO:0007018: microtubule-based movement	1.59E-03
30	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.84E-03
31	GO:0016572: histone phosphorylation	1.84E-03
32	GO:0006302: double-strand break repair	1.84E-03
33	GO:0010051: xylem and phloem pattern formation	2.12E-03
34	GO:0009955: adaxial/abaxial pattern specification	2.12E-03
35	GO:0010048: vernalization response	2.41E-03
36	GO:0006284: base-excision repair	2.41E-03
37	GO:0006974: cellular response to DNA damage stimulus	2.73E-03
38	GO:0019915: lipid storage	2.73E-03
39	GO:0010389: regulation of G2/M transition of mitotic cell cycle	3.07E-03
40	GO:0006406: mRNA export from nucleus	3.43E-03
41	GO:0010162: seed dormancy process	3.81E-03
42	GO:0009855: determination of bilateral symmetry	3.81E-03
43	GO:0006446: regulation of translational initiation	3.81E-03
44	GO:0050826: response to freezing	4.19E-03
45	GO:0001731: formation of translation preinitiation complex	4.19E-03
46	GO:0034968: histone lysine methylation	4.59E-03
47	GO:0000724: double-strand break repair via homologous recombination	4.59E-03
48	GO:0006310: DNA recombination	4.99E-03
49	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	4.99E-03
50	GO:0010182: sugar mediated signaling pathway	5.83E-03
51	GO:0009845: seed germination	7.21E-03
52	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	7.68E-03
53	GO:0009933: meristem structural organization	8.17E-03
54	GO:0006275: regulation of DNA replication	8.17E-03
55	GO:0006270: DNA replication initiation	8.67E-03
56	GO:0016579: protein deubiquitination	9.71E-03
57	GO:0009086: methionine biosynthetic process	1.02E-02
58	GO:0051726: regulation of cell cycle	1.08E-02
59	GO:0048481: plant ovule development	1.30E-02
60	GO:0051567: histone H3-K9 methylation	1.30E-02
61	GO:0009640: photomorphogenesis	1.36E-02
62	GO:0051301: cell division	1.67E-02
63	GO:0010228: vegetative to reproductive phase transition of meristem	1.74E-02
64	GO:0009965: leaf morphogenesis	1.94E-02
65	GO:0045893: positive regulation of transcription, DNA-templated	2.37E-02
66	GO:0006396: RNA processing	2.44E-02
67	GO:0009909: regulation of flower development	2.74E-02
68	GO:0006413: translational initiation	2.90E-02
69	GO:0016567: protein ubiquitination	4.18E-02

Rank	GO Term	Adjusted P value
1	GO:0008409: 5'-3' exonuclease activity	0.00E+00
2	GO:0046974: histone methyltransferase activity (H3-K9 specific)	0.00E+00
3	GO:0004798: thymidylate kinase activity	0.00E+00
4	GO:0008327: methyl-CpG binding	8.95E-05
5	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	8.95E-05
6	GO:0010428: methyl-CpNpG binding	8.95E-05
7	GO:0010429: methyl-CpNpN binding	8.95E-05
8	GO:0017108: 5'-flap endonuclease activity	8.95E-05
9	GO:0008569: ATP-dependent microtubule motor activity, minus-end-directed	2.26E-04
10	GO:0010385: double-stranded methylated DNA binding	3.93E-04
11	GO:0032549: ribonucleoside binding	3.93E-04
12	GO:0004748: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	3.93E-04
13	GO:0003713: transcription coactivator activity	1.04E-03
14	GO:0008810: cellulase activity	1.29E-03
15	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.29E-03
16	GO:0005524: ATP binding	1.45E-03
17	GO:0043022: ribosome binding	1.56E-03
18	GO:0003777: microtubule motor activity	1.59E-03
19	GO:0004518: nuclease activity	2.41E-03
20	GO:0008017: microtubule binding	2.60E-03
21	GO:0018024: histone-lysine N-methyltransferase activity	2.73E-03
22	GO:0004519: endonuclease activity	3.07E-03
23	GO:0004527: exonuclease activity	3.81E-03
24	GO:0042393: histone binding	6.74E-03
25	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.71E-03
26	GO:0008026: ATP-dependent helicase activity	1.61E-02
27	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.74E-02
28	GO:0004386: helicase activity	2.90E-02
29	GO:0016788: hydrolase activity, acting on ester bonds	2.90E-02
30	GO:0003743: translation initiation factor activity	3.39E-02
31	GO:0003676: nucleic acid binding	3.81E-02
32	GO:0000287: magnesium ion binding	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	0.00E+00
2	GO:0005654: nucleoplasm	2.28E-04
3	GO:0005971: ribonucleoside-diphosphate reductase complex	3.93E-04
4	GO:0000808: origin recognition complex	3.93E-04
5	GO:0030915: Smc5-Smc6 complex	5.86E-04
6	GO:0000776: kinetochore	5.86E-04
7	GO:0005875: microtubule associated complex	7.50E-04
8	GO:0005871: kinesin complex	1.51E-03
9	GO:0005874: microtubule	3.96E-03
10	GO:0016282: eukaryotic 43S preinitiation complex	4.19E-03
11	GO:0033290: eukaryotic 48S preinitiation complex	4.19E-03
12	GO:0005852: eukaryotic translation initiation factor 3 complex	4.59E-03
13	GO:0005694: chromosome	6.13E-03
14	GO:0005635: nuclear envelope	7.21E-03
15	GO:0009524: phragmoplast	9.71E-03
16	GO:0005634: nucleus	1.95E-02