co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G041310

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043137: DNA replication, removal of RNA primer	0.00E+00
2	GO:0045694: regulation of embryo sac egg cell differentiation	0.00E+00
3	GO:0000075: cell cycle checkpoint	0.00E+00
4	GO:0032465: regulation of cytokinesis	0.00E+00
5	GO:0006281: DNA repair	1.54E-05
6	GO:0006260: DNA replication	7.46E-05
7	GO:0010074: maintenance of meristem identity	7.98E-05
8	GO:0016572: histone phosphorylation	1.08E-04
9	GO:0007059: chromosome segregation	1.73E-04
10	GO:0000077: DNA damage checkpoint	1.73E-04
11	GO:1990426: mitotic recombination-dependent replication fork processing	1.73E-04
12	GO:0019915: lipid storage	2.22E-04
13	GO:0001522: pseudouridine synthesis	2.69E-04
14	GO:0016571: histone methylation	2.69E-04
15	GO:0006406: mRNA export from nucleus	3.21E-04
16	GO:0010162: seed dormancy process	3.78E-04
17	GO:0009755: hormone-mediated signaling pathway	4.22E-04
18	GO:0043987: histone H3-S10 phosphorylation	4.22E-04
19	GO:0050826: response to freezing	4.39E-04
20	GO:0010182: sugar mediated signaling pathway	7.31E-04
21	GO:0009845: seed germination	1.01E-03
22	GO:0008654: phospholipid biosynthetic process	1.07E-03
23	GO:0009933: meristem structural organization	1.21E-03
24	GO:0007049: cell cycle	1.43E-03
25	GO:0016579: protein deubiquitination	1.56E-03
26	GO:0009934: regulation of meristem structural organization	2.28E-03
27	GO:0009640: photomorphogenesis	2.49E-03
28	GO:0000741: karyogamy	2.74E-03
29	GO:0090305: nucleic acid phosphodiester bond hydrolysis	3.26E-03
30	GO:0006302: double-strand break repair	3.26E-03
31	GO:0051301: cell division	3.34E-03
32	GO:0010228: vegetative to reproductive phase transition of meristem	3.54E-03
33	GO:0009451: RNA modification	3.81E-03
34	GO:0009955: adaxial/abaxial pattern specification	3.81E-03
35	GO:0006259: DNA metabolic process	4.38E-03
36	GO:0010048: vernalization response	4.38E-03
37	GO:0006284: base-excision repair	4.38E-03
38	GO:0006312: mitotic recombination	4.38E-03
39	GO:0006974: cellular response to DNA damage stimulus	4.97E-03
40	GO:0045893: positive regulation of transcription, DNA-templated	5.48E-03
41	GO:0010332: response to gamma radiation	5.58E-03
42	GO:0010389: regulation of G2/M transition of mitotic cell cycle	5.58E-03
43	GO:0006396: RNA processing	5.73E-03
44	GO:0009909: regulation of flower development	6.77E-03
45	GO:0010197: polar nucleus fusion	6.91E-03
46	GO:0006446: regulation of translational initiation	6.91E-03
47	GO:0001731: formation of translation preinitiation complex	7.62E-03
48	GO:0000724: double-strand break repair via homologous recombination	8.33E-03
49	GO:0006310: DNA recombination	9.09E-03
50	GO:0009966: regulation of signal transduction	9.09E-03
51	GO:0000278: mitotic cell cycle	1.15E-02
52	GO:0016567: protein ubiquitination	1.23E-02
53	GO:0042254: ribosome biogenesis	1.32E-02
54	GO:0031047: gene silencing by RNA	1.40E-02
55	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	1.40E-02
56	GO:0000226: microtubule cytoskeleton organization	1.59E-02
57	GO:0001510: RNA methylation	1.59E-02
58	GO:0009560: embryo sac egg cell differentiation	1.59E-02
59	GO:0048366: leaf development	1.88E-02
60	GO:0009086: methionine biosynthetic process	1.88E-02
61	GO:0006950: response to stress	2.16E-02
62	GO:0048481: plant ovule development	2.40E-02
63	GO:0009793: embryo development ending in seed dormancy	2.71E-02
64	GO:0000398: mRNA splicing, via spliceosome	2.85E-02
65	GO:0008283: cell proliferation	3.08E-02
66	GO:0007018: microtubule-based movement	3.33E-02
67	GO:0009965: leaf morphogenesis	3.58E-02
68	GO:0007275: multicellular organism development	3.70E-02
69	GO:0006952: defense response	4.23E-02

Rank	GO Term	Adjusted P value
1	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	0.00E+00
2	GO:0008409: 5'-3' exonuclease activity	0.00E+00
3	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.73E-04
4	GO:0017108: 5'-flap endonuclease activity	1.73E-04
5	GO:0000150: recombinase activity	1.73E-04
6	GO:0035175: histone kinase activity (H3-S10 specific)	4.22E-04
7	GO:0016780: phosphotransferase activity, for other substituted phosphate groups	7.20E-04
8	GO:0030515: snoRNA binding	1.07E-03
9	GO:0003713: transcription coactivator activity	1.86E-03
10	GO:0008094: DNA-dependent ATPase activity	2.74E-03
11	GO:0043022: ribosome binding	2.74E-03
12	GO:0009982: pseudouridine synthase activity	3.81E-03
13	GO:0004518: nuclease activity	4.38E-03
14	GO:0003684: damaged DNA binding	4.38E-03
15	GO:0003697: single-stranded DNA binding	4.97E-03
16	GO:0003690: double-stranded DNA binding	4.97E-03
17	GO:0004519: endonuclease activity	5.58E-03
18	GO:0004527: exonuclease activity	6.91E-03
19	GO:0003676: nucleic acid binding	1.89E-02
20	GO:0017111: nucleoside-triphosphatase activity	2.21E-02
21	GO:0008026: ATP-dependent helicase activity	2.97E-02
22	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.20E-02
23	GO:0003777: microtubule motor activity	3.33E-02
24	GO:0003677: DNA binding	3.64E-02
25	GO:0003723: RNA binding	4.76E-02
26	GO:0008017: microtubule binding	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	0.00E+00
2	GO:0072588: box H/ACA RNP complex	1.73E-04
3	GO:0030896: checkpoint clamp complex	1.73E-04
4	GO:0000775: chromosome, centromeric region	7.20E-04
5	GO:0015030: Cajal body	2.28E-03
6	GO:0016272: prefoldin complex	2.74E-03
7	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.74E-03
8	GO:0005681: spliceosomal complex	4.97E-03
9	GO:0016282: eukaryotic 43S preinitiation complex	7.62E-03
10	GO:0033290: eukaryotic 48S preinitiation complex	7.62E-03
11	GO:0005852: eukaryotic translation initiation factor 3 complex	8.33E-03
12	GO:0005654: nucleoplasm	9.09E-03
13	GO:0031966: mitochondrial membrane	9.09E-03
14	GO:0005730: nucleolus	1.03E-02
15	GO:0019013: viral nucleocapsid	1.06E-02
16	GO:0005819: spindle	1.15E-02
17	GO:0005635: nuclear envelope	1.32E-02
18	GO:0045271: respiratory chain complex I	2.85E-02
19	GO:0005747: mitochondrial respiratory chain complex I	2.97E-02
20	GO:0005871: kinesin complex	3.20E-02
21	GO:0005634: nucleus	3.37E-02
22	GO:0005743: mitochondrial inner membrane	3.45E-02