Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G039855

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016572: histone phosphorylation5.32E-05
2GO:0010425: DNA methylation on cytosine within a CNG sequence1.10E-04
3GO:0010389: regulation of G2/M transition of mitotic cell cycle1.38E-04
4GO:0007018: microtubule-based movement1.51E-04
5GO:0010069: zygote asymmetric cytokinesis in embryo sac2.75E-04
6GO:0009755: hormone-mediated signaling pathway2.75E-04
7GO:0043987: histone H3-S10 phosphorylation2.75E-04
8GO:0045814: negative regulation of gene expression, epigenetic2.75E-04
9GO:0007094: mitotic spindle assembly checkpoint4.75E-04
10GO:0022904: respiratory electron transport chain4.75E-04
11GO:0009933: meristem structural organization6.52E-04
12GO:0035434: copper ion transmembrane transport7.03E-04
13GO:0032147: activation of protein kinase activity7.03E-04
14GO:0090116: C-5 methylation of cytosine7.03E-04
15GO:0007049: cell cycle7.76E-04
16GO:0006825: copper ion transport9.63E-04
17GO:0060236: regulation of mitotic spindle organization9.63E-04
18GO:0009934: regulation of meristem structural organization1.55E-03
19GO:0051301: cell division1.86E-03
20GO:0048449: floral organ formation1.86E-03
21GO:0010074: maintenance of meristem identity1.86E-03
22GO:0006342: chromatin silencing2.18E-03
23GO:0010466: negative regulation of peptidase activity2.52E-03
24GO:0016570: histone modification2.89E-03
25GO:0010048: vernalization response2.89E-03
26GO:0019915: lipid storage3.28E-03
27GO:0009909: regulation of flower development3.70E-03
28GO:0016571: histone methylation3.70E-03
29GO:0006260: DNA replication3.85E-03
30GO:0006406: mRNA export from nucleus4.13E-03
31GO:0009294: DNA mediated transformation4.58E-03
32GO:0010162: seed dormancy process4.58E-03
33GO:0016049: cell growth5.03E-03
34GO:0050826: response to freezing5.03E-03
35GO:0000902: cell morphogenesis5.50E-03
36GO:0009966: regulation of signal transduction5.99E-03
37GO:0010182: sugar mediated signaling pathway7.02E-03
38GO:0009845: seed germination8.66E-03
39GO:0006275: regulation of DNA replication9.83E-03
40GO:0048193: Golgi vesicle transport1.10E-02
41GO:0016579: protein deubiquitination1.17E-02
42GO:0051567: histone H3-K9 methylation1.57E-02
43GO:0009640: photomorphogenesis1.64E-02
44GO:0006306: DNA methylation1.72E-02
45GO:0006812: cation transport2.02E-02
46GO:0010228: vegetative to reproductive phase transition of meristem2.10E-02
47GO:0045893: positive regulation of transcription, DNA-templated2.85E-02
48GO:0006334: nucleosome assembly4.93E-02
RankGO TermAdjusted P value
1GO:0008017: microtubule binding1.72E-05
2GO:0004693: cyclin-dependent protein serine/threonine kinase activity1.10E-04
3GO:0003777: microtubule motor activity1.51E-04
4GO:0008569: ATP-dependent microtubule motor activity, minus-end-directed2.75E-04
5GO:0035175: histone kinase activity (H3-S10 specific)2.75E-04
6GO:0004748: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor4.75E-04
7GO:0005375: copper ion transmembrane transporter activity7.03E-04
8GO:0003886: DNA (cytosine-5-)-methyltransferase activity7.03E-04
9GO:0004869: cysteine-type endopeptidase inhibitor activity1.86E-03
10GO:0030414: peptidase inhibitor activity2.52E-03
11GO:0016651: oxidoreductase activity, acting on NAD(P)H5.03E-03
12GO:0019829: cation-transporting ATPase activity5.99E-03
13GO:0005524: ATP binding2.37E-02
14GO:0004674: protein serine/threonine kinase activity4.42E-02
RankGO TermAdjusted P value
1GO:0000307: cyclin-dependent protein kinase holoenzyme complex0.00E+00
2GO:0005874: microtubule4.03E-05
3GO:0005871: kinesin complex1.39E-04
4GO:0005819: spindle4.38E-04
5GO:0005971: ribonucleoside-diphosphate reductase complex4.75E-04
6GO:0000776: kinetochore7.03E-04
7GO:0005875: microtubule associated complex9.88E-04
8GO:0031966: mitochondrial membrane5.99E-03
9GO:0005635: nuclear envelope8.66E-03
10GO:0009524: phragmoplast1.17E-02
11GO:0045271: respiratory chain complex I1.86E-02
12GO:0005743: mitochondrial inner membrane2.26E-02
13GO:0000786: nucleosome4.51E-02