co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G039711

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042780: tRNA 3'-end processing	0.00E+00
2	GO:1900865: chloroplast RNA modification	0.00E+00
3	GO:0010157: response to chlorate	0.00E+00
4	GO:0043686: co-translational protein modification	0.00E+00
5	GO:0006591: ornithine metabolic process	0.00E+00
6	GO:0090391: granum assembly	0.00E+00
7	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
8	GO:0043953: protein transport by the Tat complex	0.00E+00
9	GO:0000372: Group I intron splicing	0.00E+00
10	GO:0046506: sulfolipid biosynthetic process	0.00E+00
11	GO:0010117: photoprotection	0.00E+00
12	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
13	GO:0009658: chloroplast organization	7.28E-13
14	GO:0006457: protein folding	2.47E-10
15	GO:0006364: rRNA processing	2.25E-05
16	GO:1901671: positive regulation of superoxide dismutase activity	2.73E-05
17	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.93E-05
18	GO:0006399: tRNA metabolic process	4.41E-05
19	GO:0000373: Group II intron splicing	1.99E-04
20	GO:0042026: protein refolding	1.99E-04
21	GO:0006782: protoporphyrinogen IX biosynthetic process	1.99E-04
22	GO:0045037: protein import into chloroplast stroma	1.99E-04
23	GO:0045038: protein import into chloroplast thylakoid membrane	1.99E-04
24	GO:0045036: protein targeting to chloroplast	2.47E-04
25	GO:0042793: transcription from plastid promoter	3.15E-04
26	GO:0010468: regulation of gene expression	3.47E-04
27	GO:0009306: protein secretion	5.33E-04
28	GO:0044267: cellular protein metabolic process	6.88E-04
29	GO:0010027: thylakoid membrane organization	7.34E-04
30	GO:0010206: photosystem II repair	7.60E-04
31	GO:0019538: protein metabolic process	7.60E-04
32	GO:0010587: miRNA catabolic process	9.36E-04
33	GO:0009968: negative regulation of signal transduction	9.36E-04
34	GO:0006788: heme oxidation	9.36E-04
35	GO:0043157: response to cation stress	9.36E-04
36	GO:0018160: peptidyl-pyrromethane cofactor linkage	9.36E-04
37	GO:0032543: mitochondrial translation	9.36E-04
38	GO:0080141: regulation of jasmonic acid biosynthetic process	9.36E-04
39	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	9.36E-04
40	GO:0051512: positive regulation of unidimensional cell growth	9.36E-04
41	GO:0009902: chloroplast relocation	1.81E-03
42	GO:0016556: mRNA modification	2.08E-03
43	GO:0010024: phytochromobilin biosynthetic process	2.13E-03
44	GO:0009102: biotin biosynthetic process	2.13E-03
45	GO:0009642: response to light intensity	2.13E-03
46	GO:0010380: regulation of chlorophyll biosynthetic process	2.13E-03
47	GO:0030308: negative regulation of cell growth	2.13E-03
48	GO:0019481: L-alanine catabolic process, by transamination	2.13E-03
49	GO:0006779: porphyrin-containing compound biosynthetic process	2.49E-03
50	GO:0045893: positive regulation of transcription, DNA-templated	2.64E-03
51	GO:0006655: phosphatidylglycerol biosynthetic process	3.51E-03
52	GO:0006450: regulation of translational fidelity	3.58E-03
53	GO:0051085: chaperone mediated protein folding requiring cofactor	3.58E-03
54	GO:0016075: rRNA catabolic process	3.58E-03
55	GO:0009247: glycolipid biosynthetic process	3.58E-03
56	GO:0015867: ATP transport	3.58E-03
57	GO:0019760: glucosinolate metabolic process	3.58E-03
58	GO:0000304: response to singlet oxygen	3.58E-03
59	GO:0008299: isoprenoid biosynthetic process	4.09E-03
60	GO:0009408: response to heat	4.68E-03
61	GO:0006165: nucleoside diphosphate phosphorylation	5.27E-03
62	GO:0006790: sulfur compound metabolic process	5.27E-03
63	GO:0006228: UTP biosynthetic process	5.27E-03
64	GO:0006353: DNA-templated transcription, termination	5.27E-03
65	GO:0019375: galactolipid biosynthetic process	5.27E-03
66	GO:0006183: GTP biosynthetic process	5.27E-03
67	GO:0006401: RNA catabolic process	5.27E-03
68	GO:0006241: CTP biosynthetic process	5.27E-03
69	GO:0019684: photosynthesis, light reaction	5.39E-03
70	GO:0006950: response to stress	6.07E-03
71	GO:0010103: stomatal complex morphogenesis	6.90E-03
72	GO:0009627: systemic acquired resistance	6.90E-03
73	GO:0006081: cellular aldehyde metabolic process	7.21E-03
74	GO:0035304: regulation of protein dephosphorylation	7.73E-03
75	GO:0006184: obsolete GTP catabolic process	8.39E-03
76	GO:0006749: glutathione metabolic process	9.34E-03
77	GO:0031347: regulation of defense response	9.34E-03
78	GO:0010207: photosystem II assembly	1.09E-02
79	GO:0006189: 'de novo' IMP biosynthetic process	1.17E-02
80	GO:0034660: ncRNA metabolic process	1.17E-02
81	GO:0006801: superoxide metabolic process	1.17E-02
82	GO:0032880: regulation of protein localization	1.17E-02
83	GO:0009704: de-etiolation	1.17E-02
84	GO:0009411: response to UV	1.17E-02
85	GO:0033014: tetrapyrrole biosynthetic process	1.17E-02
86	GO:0006520: cellular amino acid metabolic process	1.26E-02
87	GO:0006396: RNA processing	1.37E-02
88	GO:0009628: response to abiotic stimulus	1.42E-02
89	GO:0051604: protein maturation	1.42E-02
90	GO:0009409: response to cold	1.61E-02
91	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.69E-02
92	GO:0009416: response to light stimulus	1.69E-02
93	GO:0045087: innate immune response	1.69E-02
94	GO:0001666: response to hypoxia	1.69E-02
95	GO:0009585: red, far-red light phototransduction	1.69E-02
96	GO:0019344: cysteine biosynthetic process	1.75E-02
97	GO:0009637: response to blue light	1.75E-02
98	GO:0009790: embryo development	1.89E-02
99	GO:0009407: toxin catabolic process	1.97E-02
100	GO:0000302: response to reactive oxygen species	1.97E-02
101	GO:0010114: response to red light	2.03E-02
102	GO:0010218: response to far red light	2.33E-02
103	GO:0046854: phosphatidylinositol phosphorylation	2.92E-02
104	GO:0031408: oxylipin biosynthetic process	3.27E-02
105	GO:0051607: defense response to virus	3.27E-02
106	GO:0048316: seed development	3.27E-02
107	GO:0015995: chlorophyll biosynthetic process	3.56E-02
108	GO:0006508: proteolysis	3.76E-02
109	GO:0045454: cell redox homeostasis	3.85E-02
110	GO:0006261: DNA-dependent DNA replication	4.01E-02
111	GO:0009657: plastid organization	4.40E-02
112	GO:0016036: cellular response to phosphate starvation	4.80E-02
113	GO:0035196: production of miRNAs involved in gene silencing by miRNA	4.80E-02
114	GO:0008219: cell death	4.80E-02
115	GO:0010155: regulation of proton transport	4.80E-02
116	GO:0010267: production of ta-siRNAs involved in RNA interference	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0004076: biotin synthase activity	0.00E+00
2	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
3	GO:0004585: ornithine carbamoyltransferase activity	0.00E+00
4	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
5	GO:0042586: peptide deformylase activity	0.00E+00
6	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
7	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
8	GO:0004853: uroporphyrinogen decarboxylase activity	2.73E-05
9	GO:0016743: carboxyl- or carbamoyltransferase activity	9.26E-05
10	GO:0000774: adenyl-nucleotide exchange factor activity	9.26E-05
11	GO:0051082: unfolded protein binding	3.31E-04
12	GO:0004252: serine-type endopeptidase activity	7.34E-04
13	GO:0004525: ribonuclease III activity	7.60E-04
14	GO:0004362: glutathione-disulfide reductase activity	9.36E-04
15	GO:0008146: sulfotransferase activity	9.36E-04
16	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	9.36E-04
17	GO:0004418: hydroxymethylbilane synthase activity	9.36E-04
18	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	9.36E-04
19	GO:0051087: chaperone binding	1.04E-03
20	GO:0042803: protein homodimerization activity	1.59E-03
21	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.69E-03
22	GO:0046914: transition metal ion binding	2.08E-03
23	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	2.13E-03
24	GO:0047134: protein-disulfide reductase activity	2.13E-03
25	GO:0019204: obsolete nucleotide phosphatase activity	2.13E-03
26	GO:0005347: ATP transmembrane transporter activity	2.13E-03
27	GO:0004392: heme oxygenase (decyclizing) activity	2.13E-03
28	GO:0005496: steroid binding	2.13E-03
29	GO:0005507: copper ion binding	3.33E-03
30	GO:0016831: carboxy-lyase activity	4.73E-03
31	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	5.27E-03
32	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	5.27E-03
33	GO:0004550: nucleoside diphosphate kinase activity	5.27E-03
34	GO:0031072: heat shock protein binding	8.60E-03
35	GO:0008565: protein transporter activity	8.60E-03
36	GO:0008173: RNA methyltransferase activity	9.34E-03
37	GO:0016817: hydrolase activity, acting on acid anhydrides	9.34E-03
38	GO:0016597: amino acid binding	1.16E-02
39	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.17E-02
40	GO:0004784: superoxide dismutase activity	1.42E-02
41	GO:0003887: DNA-directed DNA polymerase activity	1.42E-02
42	GO:0008408: 3'-5' exonuclease activity	1.69E-02
43	GO:0008266: poly(U) RNA binding	1.69E-02
44	GO:0008233: peptidase activity	2.02E-02
45	GO:0005525: GTP binding	2.03E-02
46	GO:0003690: double-stranded DNA binding	2.59E-02
47	GO:0005524: ATP binding	3.37E-02
48	GO:0003924: GTPase activity	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0009526: plastid envelope	0.00E+00
2	GO:0042646: plastid nucleoid	0.00E+00
3	GO:0055035: plastid thylakoid membrane	0.00E+00
4	GO:0019867: outer membrane	0.00E+00
5	GO:0009507: chloroplast	7.06E-19
6	GO:0009941: chloroplast envelope	9.31E-17
7	GO:0009570: chloroplast stroma	1.58E-15
8	GO:0009535: chloroplast thylakoid membrane	7.20E-10
9	GO:0009579: thylakoid	3.81E-09
10	GO:0009532: plastid stroma	8.58E-09
11	GO:0009707: chloroplast outer membrane	3.47E-04
12	GO:0009840: chloroplastic endopeptidase Clp complex	3.47E-04
13	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	9.36E-04
14	GO:0080085: signal recognition particle, chloroplast targeting	9.36E-04
15	GO:0005759: mitochondrial matrix	1.81E-03
16	GO:0009533: chloroplast stromal thylakoid	2.13E-03
17	GO:0009534: chloroplast thylakoid	6.90E-03
18	GO:0005739: mitochondrion	7.30E-03
19	GO:0009536: plastid	8.66E-03
20	GO:0019898: extrinsic component of membrane	9.34E-03
21	GO:0009706: chloroplast inner membrane	1.05E-02
22	GO:0009654: photosystem II oxygen evolving complex	1.17E-02
23	GO:0010319: stromule	2.03E-02
24	GO:0048046: apoplast	2.09E-02
25	GO:0031977: thylakoid lumen	2.18E-02
26	GO:0009295: nucleoid	2.59E-02
27	GO:0042651: thylakoid membrane	3.27E-02
28	GO:0009543: chloroplast thylakoid lumen	3.27E-02