Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G039089

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019627: urea metabolic process0.00E+00
2GO:0010270: photosystem II oxygen evolving complex assembly0.00E+00
3GO:0043686: co-translational protein modification0.00E+00
4GO:0043043: peptide biosynthetic process0.00E+00
5GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA0.00E+00
6GO:0043419: urea catabolic process0.00E+00
7GO:0006436: tryptophanyl-tRNA aminoacylation0.00E+00
8GO:0010337: regulation of salicylic acid metabolic process0.00E+00
9GO:0006779: porphyrin-containing compound biosynthetic process1.17E-07
10GO:0045036: protein targeting to chloroplast1.27E-05
11GO:0010207: photosystem II assembly8.78E-05
12GO:0010027: thylakoid membrane organization1.68E-04
13GO:0009735: response to cytokinin1.75E-04
14GO:0006429: leucyl-tRNA aminoacylation2.47E-04
15GO:0018160: peptidyl-pyrromethane cofactor linkage2.47E-04
16GO:0016226: iron-sulfur cluster assembly3.03E-04
17GO:0006546: glycine catabolic process3.71E-04
18GO:0009658: chloroplast organization3.99E-04
19GO:0043255: regulation of carbohydrate biosynthetic process5.87E-04
20GO:0019464: glycine decarboxylation via glycine cleavage system5.87E-04
21GO:0015995: chlorophyll biosynthetic process5.99E-04
22GO:0006364: rRNA processing6.98E-04
23GO:0000304: response to singlet oxygen1.00E-03
24GO:0006733: oxidoreduction coenzyme metabolic process1.00E-03
25GO:0010731: protein glutathionylation1.00E-03
26GO:0000373: Group II intron splicing1.47E-03
27GO:0006782: protoporphyrinogen IX biosynthetic process1.47E-03
28GO:0006165: nucleoside diphosphate phosphorylation1.47E-03
29GO:0006228: UTP biosynthetic process1.47E-03
30GO:0010417: glucuronoxylan biosynthetic process1.47E-03
31GO:0009117: nucleotide metabolic process1.47E-03
32GO:0006183: GTP biosynthetic process1.47E-03
33GO:0006241: CTP biosynthetic process1.47E-03
34GO:0019748: secondary metabolic process1.98E-03
35GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.13E-03
36GO:0009306: protein secretion2.52E-03
37GO:0009108: coenzyme biosynthetic process3.14E-03
38GO:0010583: response to cyclopentenone3.14E-03
39GO:0033014: tetrapyrrole biosynthetic process3.14E-03
40GO:0009106: lipoate metabolic process3.14E-03
41GO:0006032: chitin catabolic process3.14E-03
42GO:0006766: vitamin metabolic process3.14E-03
43GO:0009411: response to UV3.14E-03
44GO:0006399: tRNA metabolic process3.81E-03
45GO:0010053: root epidermal cell differentiation3.81E-03
46GO:0006418: tRNA aminoacylation for protein translation4.01E-03
47GO:0009585: red, far-red light phototransduction4.53E-03
48GO:0006414: translational elongation4.54E-03
49GO:0009407: toxin catabolic process5.26E-03
50GO:0009809: lignin biosynthetic process5.26E-03
51GO:0009834: plant-type secondary cell wall biogenesis5.26E-03
52GO:0045492: xylan biosynthetic process6.89E-03
53GO:0010264: myo-inositol hexakisphosphate biosynthetic process6.89E-03
54GO:0009825: multidimensional cell growth7.76E-03
55GO:0016998: cell wall macromolecule catabolic process7.76E-03
56GO:0042793: transcription from plastid promoter8.66E-03
57GO:0051607: defense response to virus8.66E-03
58GO:0045893: positive regulation of transcription, DNA-templated8.82E-03
59GO:0015996: chlorophyll catabolic process9.61E-03
60GO:0005982: starch metabolic process9.61E-03
61GO:0006636: unsaturated fatty acid biosynthetic process9.61E-03
62GO:0042545: cell wall modification1.06E-02
63GO:0030154: cell differentiation1.16E-02
64GO:0010267: production of ta-siRNAs involved in RNA interference1.26E-02
65GO:0035196: production of miRNAs involved in gene silencing by miRNA1.26E-02
66GO:0035304: regulation of protein dephosphorylation1.48E-02
67GO:0006807: nitrogen compound metabolic process1.48E-02
68GO:0010224: response to UV-B1.48E-02
69GO:0015979: photosynthesis1.57E-02
70GO:0009695: jasmonic acid biosynthetic process1.60E-02
71GO:0051258: protein polymerization1.60E-02
72GO:0042742: defense response to bacterium1.61E-02
73GO:0007017: microtubule-based process1.83E-02
74GO:0006184: obsolete GTP catabolic process1.85E-02
75GO:0009902: chloroplast relocation2.08E-02
76GO:0009826: unidimensional cell growth2.35E-02
77GO:0009073: aromatic amino acid family biosynthetic process2.48E-02
78GO:0019344: cysteine biosynthetic process2.62E-02
79GO:0009409: response to cold2.91E-02
80GO:0048481: plant ovule development3.35E-02
81GO:0000023: maltose metabolic process3.35E-02
82GO:0009723: response to ethylene3.66E-02
83GO:0042542: response to hydrogen peroxide3.82E-02
84GO:0009793: embryo development ending in seed dormancy4.33E-02
85GO:0010228: vegetative to reproductive phase transition of meristem4.48E-02
86GO:0007018: microtubule-based movement4.65E-02
87GO:0043085: positive regulation of catalytic activity4.82E-02
88GO:0006200: obsolete ATP catabolic process4.82E-02
89GO:0009965: leaf morphogenesis4.99E-02
RankGO TermAdjusted P value
1GO:0004479: methionyl-tRNA formyltransferase activity0.00E+00
2GO:0004830: tryptophan-tRNA ligase activity0.00E+00
3GO:0009039: urease activity0.00E+00
4GO:0042586: peptide deformylase activity0.00E+00
5GO:0004109: coproporphyrinogen oxidase activity0.00E+00
6GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity2.47E-04
7GO:0016151: nickel cation binding2.47E-04
8GO:0004418: hydroxymethylbilane synthase activity2.47E-04
9GO:0016851: magnesium chelatase activity2.47E-04
10GO:0004823: leucine-tRNA ligase activity2.47E-04
11GO:0045174: glutathione dehydrogenase (ascorbate) activity2.47E-04
12GO:0051920: peroxiredoxin activity5.87E-04
13GO:0016630: protochlorophyllide reductase activity5.87E-04
14GO:0016742: hydroxymethyl-, formyl- and related transferase activity5.87E-04
15GO:0004462: lactoylglutathione lyase activity5.87E-04
16GO:0004853: uroporphyrinogen decarboxylase activity5.87E-04
17GO:0003959: NADPH dehydrogenase activity1.00E-03
18GO:0015020: glucuronosyltransferase activity1.00E-03
19GO:0080116: glucuronoxylan glucuronosyltransferase activity1.00E-03
20GO:0004550: nucleoside diphosphate kinase activity1.47E-03
21GO:0016209: antioxidant activity1.47E-03
22GO:0070569: uridylyltransferase activity1.47E-03
23GO:0004765: shikimate kinase activity1.47E-03
24GO:0004568: chitinase activity3.14E-03
25GO:0003746: translation elongation factor activity3.28E-03
26GO:0043022: ribosome binding3.81E-03
27GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds4.53E-03
28GO:0004812: aminoacyl-tRNA ligase activity4.54E-03
29GO:0008081: phosphoric diester hydrolase activity9.61E-03
30GO:0016831: carboxy-lyase activity1.06E-02
31GO:0005200: structural constituent of cytoskeleton1.37E-02
32GO:0008565: protein transporter activity1.60E-02
33GO:0003777: microtubule motor activity4.65E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.64E-11
2GO:0009570: chloroplast stroma2.13E-10
3GO:0009941: chloroplast envelope2.00E-08
4GO:0009579: thylakoid9.45E-06
5GO:0005960: glycine cleavage complex2.47E-04
6GO:0009295: nucleoid3.71E-04
7GO:0009840: chloroplastic endopeptidase Clp complex1.98E-03
8GO:0009535: chloroplast thylakoid membrane2.37E-03
9GO:0019898: extrinsic component of membrane2.52E-03
10GO:0010319: stromule3.05E-03
11GO:0009654: photosystem II oxygen evolving complex3.14E-03
12GO:0031977: thylakoid lumen3.28E-03
13GO:0042651: thylakoid membrane8.66E-03
14GO:0019013: viral nucleocapsid1.48E-02
15GO:0005874: microtubule1.52E-02
16GO:0043234: protein complex1.71E-02
17GO:0009706: chloroplast inner membrane1.83E-02
18GO:0005802: trans-Golgi network1.96E-02
19GO:0009523: photosystem II2.35E-02
20GO:0005875: microtubule associated complex2.76E-02
21GO:0015935: small ribosomal subunit3.05E-02
22GO:0048046: apoplast3.44E-02
23GO:0009534: chloroplast thylakoid4.31E-02
24GO:0010287: plastoglobule4.31E-02
25GO:0005871: kinesin complex4.48E-02
26GO:0005768: endosome4.48E-02
27GO:0030529: intracellular ribonucleoprotein complex4.89E-02