co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G035708

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042372: phylloquinone biosynthetic process	0.00E+00
2	GO:0051188: cofactor biosynthetic process	0.00E+00
3	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
4	GO:0043043: peptide biosynthetic process	0.00E+00
5	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
6	GO:0042821: pyridoxal biosynthetic process	0.00E+00
7	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
8	GO:0042550: photosystem I stabilization	0.00E+00
9	GO:0009234: menaquinone biosynthetic process	0.00E+00
10	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
11	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	0.00E+00
12	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
13	GO:1901259: chloroplast rRNA processing	0.00E+00
14	GO:0010028: xanthophyll cycle	0.00E+00
15	GO:0035436: triose phosphate transmembrane transport	0.00E+00
16	GO:0090342: regulation of cell aging	0.00E+00
17	GO:0015714: phosphoenolpyruvate transport	0.00E+00
18	GO:0032544: plastid translation	0.00E+00
19	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.98E-23
20	GO:0006098: pentose-phosphate shunt	8.85E-19
21	GO:0010027: thylakoid membrane organization	1.83E-18
22	GO:0010207: photosystem II assembly	2.13E-15
23	GO:0015979: photosynthesis	3.03E-14
24	GO:0006364: rRNA processing	1.18E-12
25	GO:0015995: chlorophyll biosynthetic process	3.31E-12
26	GO:0009902: chloroplast relocation	2.14E-10
27	GO:0009773: photosynthetic electron transport in photosystem I	7.02E-10
28	GO:0016117: carotenoid biosynthetic process	1.11E-09
29	GO:0042793: transcription from plastid promoter	4.77E-08
30	GO:0006412: translation	5.24E-08
31	GO:0043085: positive regulation of catalytic activity	1.00E-06
32	GO:0045036: protein targeting to chloroplast	1.13E-06
33	GO:0006636: unsaturated fatty acid biosynthetic process	2.82E-06
34	GO:0000096: sulfur amino acid metabolic process	1.62E-05
35	GO:0016226: iron-sulfur cluster assembly	1.86E-05
36	GO:0009658: chloroplast organization	3.29E-05
37	GO:0009767: photosynthetic electron transport chain	4.71E-05
38	GO:0034660: ncRNA metabolic process	6.35E-05
39	GO:0009106: lipoate metabolic process	6.35E-05
40	GO:0006766: vitamin metabolic process	6.35E-05
41	GO:0009108: coenzyme biosynthetic process	6.35E-05
42	GO:0019761: glucosinolate biosynthetic process	1.40E-04
43	GO:0010155: regulation of proton transport	1.44E-04
44	GO:0010103: stomatal complex morphogenesis	1.81E-04
45	GO:0000023: maltose metabolic process	2.57E-04
46	GO:0006354: DNA-templated transcription, elongation	3.14E-04
47	GO:0016556: mRNA modification	3.14E-04
48	GO:0045037: protein import into chloroplast stroma	3.64E-04
49	GO:0045038: protein import into chloroplast thylakoid membrane	3.64E-04
50	GO:0006546: glycine catabolic process	4.15E-04
51	GO:0009765: photosynthesis, light harvesting	4.15E-04
52	GO:0019252: starch biosynthetic process	4.64E-04
53	GO:0070838: divalent metal ion transport	6.17E-04
54	GO:0006569: tryptophan catabolic process	6.17E-04
55	GO:0009772: photosynthetic electron transport in photosystem II	6.17E-04
56	GO:0009813: flavonoid biosynthetic process	6.17E-04
57	GO:0019748: secondary metabolic process	6.17E-04
58	GO:0006655: phosphatidylglycerol biosynthetic process	6.71E-04
59	GO:0009637: response to blue light	9.34E-04
60	GO:0010114: response to red light	1.19E-03
61	GO:0030154: cell differentiation	1.21E-03
62	GO:0009657: plastid organization	1.21E-03
63	GO:0019684: photosynthesis, light reaction	1.21E-03
64	GO:0010206: photosystem II repair	1.34E-03
65	GO:0030003: cellular cation homeostasis	1.34E-03
66	GO:0008361: regulation of cell size	1.37E-03
67	GO:0006434: seryl-tRNA aminoacylation	1.37E-03
68	GO:0016050: vesicle organization	1.37E-03
69	GO:0006573: valine metabolic process	1.37E-03
70	GO:0032543: mitochondrial translation	1.37E-03
71	GO:0009768: photosynthesis, light harvesting in photosystem I	1.37E-03
72	GO:0009069: serine family amino acid metabolic process	1.37E-03
73	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	1.37E-03
74	GO:0019676: ammonia assimilation cycle	1.37E-03
75	GO:0009443: pyridoxal 5'-phosphate salvage	1.37E-03
76	GO:0018298: protein-chromophore linkage	1.43E-03
77	GO:0010218: response to far red light	1.48E-03
78	GO:0006399: tRNA metabolic process	1.79E-03
79	GO:0046777: protein autophosphorylation	1.93E-03
80	GO:0009416: response to light stimulus	2.02E-03
81	GO:0009695: jasmonic acid biosynthetic process	2.21E-03
82	GO:0009072: aromatic amino acid family metabolic process	2.30E-03
83	GO:0009684: indoleacetic acid biosynthetic process	2.89E-03
84	GO:0048653: anther development	3.07E-03
85	GO:0044272: sulfur compound biosynthetic process	3.07E-03
86	GO:0006432: phenylalanyl-tRNA aminoacylation	3.07E-03
87	GO:0006875: cellular metal ion homeostasis	3.07E-03
88	GO:0010236: plastoquinone biosynthetic process	3.07E-03
89	GO:0022900: electron transport chain	3.40E-03
90	GO:0009697: salicylic acid biosynthetic process	3.58E-03
91	GO:0080167: response to karrikin	3.70E-03
92	GO:0009735: response to cytokinin	4.57E-03
93	GO:0009073: aromatic amino acid family biosynthetic process	5.05E-03
94	GO:0007186: G-protein coupled receptor signaling pathway	5.23E-03
95	GO:0006733: oxidoreduction coenzyme metabolic process	5.23E-03
96	GO:0016024: CDP-diacylglycerol biosynthetic process	5.23E-03
97	GO:0022904: respiratory electron transport chain	5.23E-03
98	GO:0019760: glucosinolate metabolic process	5.23E-03
99	GO:0019344: cysteine biosynthetic process	5.59E-03
100	GO:0045893: positive regulation of transcription, DNA-templated	6.21E-03
101	GO:0050821: protein stabilization	7.76E-03
102	GO:0016485: protein processing	7.76E-03
103	GO:0019216: regulation of lipid metabolic process	7.76E-03
104	GO:0051205: protein insertion into membrane	7.76E-03
105	GO:0009595: detection of biotic stimulus	7.76E-03
106	GO:0009117: nucleotide metabolic process	7.76E-03
107	GO:0006353: DNA-templated transcription, termination	7.76E-03
108	GO:0006014: D-ribose metabolic process	7.76E-03
109	GO:0007389: pattern specification process	7.76E-03
110	GO:0006631: fatty acid metabolic process	9.40E-03
111	GO:0006418: tRNA aminoacylation for protein translation	9.57E-03
112	GO:0006796: phosphate-containing compound metabolic process	1.06E-02
113	GO:0060416: response to growth hormone	1.06E-02
114	GO:0050790: regulation of catalytic activity	1.06E-02
115	GO:0043900: regulation of multi-organism process	1.06E-02
116	GO:0034755: iron ion transmembrane transport	1.06E-02
117	GO:0007568: aging	1.06E-02
118	GO:0015994: chlorophyll metabolic process	1.06E-02
119	GO:0070084: protein initiator methionine removal	1.06E-02
120	GO:0006414: translational elongation	1.12E-02
121	GO:0010224: response to UV-B	1.34E-02
122	GO:0035304: regulation of protein dephosphorylation	1.34E-02
123	GO:0007005: mitochondrion organization	1.38E-02
124	GO:0006542: glutamine biosynthetic process	1.38E-02
125	GO:0006568: tryptophan metabolic process	1.38E-02
126	GO:0009913: epidermal cell differentiation	1.38E-02
127	GO:0008652: cellular amino acid biosynthetic process	1.39E-02
128	GO:0009817: defense response to fungus, incompatible interaction	1.50E-02
129	GO:0009926: auxin polar transport	1.72E-02
130	GO:0009704: de-etiolation	1.72E-02
131	GO:0009987: cellular process	1.72E-02
132	GO:0009411: response to UV	1.72E-02
133	GO:0009814: defense response, incompatible interaction	1.72E-02
134	GO:0009409: response to cold	1.80E-02
135	GO:0009965: leaf morphogenesis	1.82E-02
136	GO:0042742: defense response to bacterium	1.88E-02
137	GO:0043039: tRNA aminoacylation	2.10E-02
138	GO:0010310: regulation of hydrogen peroxide metabolic process	2.10E-02
139	GO:0040007: growth	2.50E-02
140	GO:0010015: root morphogenesis	2.50E-02
141	GO:0015977: carbon fixation	2.50E-02
142	GO:0000162: tryptophan biosynthetic process	2.50E-02
143	GO:0006662: glycerol ether metabolic process	2.82E-02
144	GO:0009832: plant-type cell wall biogenesis	2.92E-02
145	GO:0006814: sodium ion transport	3.37E-02
146	GO:0006006: glucose metabolic process	3.37E-02
147	GO:0048527: lateral root development	3.37E-02
148	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	3.84E-02
149	GO:0048481: plant ovule development	4.32E-02
150	GO:0046854: phosphatidylinositol phosphorylation	4.34E-02
151	GO:0031408: oxylipin biosynthetic process	4.85E-02
152	GO:0008033: tRNA processing	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0005504: fatty acid binding	0.00E+00
2	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
3	GO:0045550: geranylgeranyl reductase activity	0.00E+00
4	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
5	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
6	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
9	GO:0004802: transketolase activity	0.00E+00
10	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
11	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
12	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
13	GO:0031409: pigment binding	0.00E+00
14	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
15	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
16	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
17	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
18	GO:0003735: structural constituent of ribosome	9.58E-07
19	GO:0016168: chlorophyll binding	8.55E-06
20	GO:0045430: chalcone isomerase activity	5.36E-05
21	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	5.36E-05
22	GO:0016872: intramolecular lyase activity	1.74E-04
23	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.29E-04
24	GO:0009055: electron carrier activity	1.29E-03
25	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.37E-03
26	GO:0070402: NADPH binding	1.37E-03
27	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.37E-03
28	GO:0004618: phosphoglycerate kinase activity	1.37E-03
29	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.37E-03
30	GO:0015088: copper uptake transmembrane transporter activity	1.37E-03
31	GO:0004828: serine-tRNA ligase activity	1.37E-03
32	GO:0051537: 2 iron, 2 sulfur cluster binding	2.21E-03
33	GO:0000049: tRNA binding	2.89E-03
34	GO:0004605: phosphatidate cytidylyltransferase activity	3.07E-03
35	GO:0004826: phenylalanine-tRNA ligase activity	3.07E-03
36	GO:0033897: ribonuclease T2 activity	5.23E-03
37	GO:0003746: translation elongation factor activity	7.41E-03
38	GO:0071949: FAD binding	7.76E-03
39	GO:0004659: prenyltransferase activity	7.76E-03
40	GO:0004332: fructose-bisphosphate aldolase activity	7.76E-03
41	GO:0004747: ribokinase activity	7.76E-03
42	GO:0004765: shikimate kinase activity	7.76E-03
43	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	7.76E-03
44	GO:0016984: ribulose-bisphosphate carboxylase activity	7.76E-03
45	GO:0016209: antioxidant activity	7.76E-03
46	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.06E-02
47	GO:0070006: metalloaminopeptidase activity	1.06E-02
48	GO:0030234: enzyme regulator activity	1.06E-02
49	GO:0005381: iron ion transmembrane transporter activity	1.06E-02
50	GO:0004812: aminoacyl-tRNA ligase activity	1.12E-02
51	GO:0008235: metalloexopeptidase activity	1.38E-02
52	GO:0004356: glutamate-ammonia ligase activity	1.38E-02
53	GO:0004834: tryptophan synthase activity	1.38E-02
54	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	1.72E-02
55	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.72E-02
56	GO:0004222: metalloendopeptidase activity	1.83E-02
57	GO:0019843: rRNA binding	2.01E-02
58	GO:0015035: protein disulfide oxidoreductase activity	2.46E-02
59	GO:0004427: inorganic diphosphatase activity	2.50E-02
60	GO:0051536: iron-sulfur cluster binding	2.90E-02
61	GO:0004177: aminopeptidase activity	2.92E-02
62	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.92E-02
63	GO:0043531: ADP binding	3.84E-02
64	GO:0003690: double-stranded DNA binding	3.84E-02
65	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.84E-02

Rank	GO Term	Adjusted P value
1	GO:0030093: chloroplast photosystem I	0.00E+00
2	GO:0009782: photosystem I antenna complex	0.00E+00
3	GO:0009512: cytochrome b6f complex	0.00E+00
4	GO:0009507: chloroplast	1.12E-51
5	GO:0009570: chloroplast stroma	1.27E-32
6	GO:0009941: chloroplast envelope	1.26E-29
7	GO:0009535: chloroplast thylakoid membrane	1.09E-25
8	GO:0009579: thylakoid	6.18E-17
9	GO:0009543: chloroplast thylakoid lumen	9.31E-10
10	GO:0009534: chloroplast thylakoid	1.74E-09
11	GO:0005840: ribosome	2.36E-09
12	GO:0009295: nucleoid	1.35E-08
13	GO:0031977: thylakoid lumen	7.00E-08
14	GO:0009523: photosystem II	3.24E-07
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.90E-07
16	GO:0009522: photosystem I	1.59E-05
17	GO:0009508: plastid chromosome	1.62E-05
18	GO:0030529: intracellular ribonucleoprotein complex	3.41E-04
19	GO:0010287: plastoglobule	5.34E-04
20	GO:0019898: extrinsic component of membrane	9.42E-04
21	GO:0010319: stromule	1.19E-03
22	GO:0009654: photosystem II oxygen evolving complex	1.34E-03
23	GO:0009528: plastid inner membrane	1.37E-03
24	GO:0042406: extrinsic component of endoplasmic reticulum membrane	1.37E-03
25	GO:0000311: plastid large ribosomal subunit	1.37E-03
26	GO:0009527: plastid outer membrane	1.37E-03
27	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.37E-03
28	GO:0005622: intracellular	1.89E-03
29	GO:0055028: cortical microtubule	5.23E-03
30	GO:0015934: large ribosomal subunit	6.77E-03
31	GO:0009538: photosystem I reaction center	7.76E-03
32	GO:0016020: membrane	8.51E-03
33	GO:0048046: apoplast	9.33E-03
34	GO:0009706: chloroplast inner membrane	1.83E-02
35	GO:0009532: plastid stroma	2.10E-02
36	GO:0042651: thylakoid membrane	4.85E-02