co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G030072

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046506: sulfolipid biosynthetic process	0.00E+00
2	GO:0010117: photoprotection	0.00E+00
3	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
4	GO:0042780: tRNA 3'-end processing	0.00E+00
5	GO:1900865: chloroplast RNA modification	0.00E+00
6	GO:0010157: response to chlorate	0.00E+00
7	GO:0043686: co-translational protein modification	0.00E+00
8	GO:0006591: ornithine metabolic process	0.00E+00
9	GO:0048564: photosystem I assembly	0.00E+00
10	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
11	GO:0043953: protein transport by the Tat complex	0.00E+00
12	GO:0006457: protein folding	2.56E-12
13	GO:0009658: chloroplast organization	2.10E-10
14	GO:0009306: protein secretion	8.69E-06
15	GO:1901671: positive regulation of superoxide dismutase activity	1.93E-05
16	GO:0006399: tRNA metabolic process	2.80E-05
17	GO:0010027: thylakoid membrane organization	5.56E-05
18	GO:0006364: rRNA processing	6.99E-05
19	GO:0006782: protoporphyrinogen IX biosynthetic process	1.45E-04
20	GO:0045036: protein targeting to chloroplast	1.64E-04
21	GO:0010468: regulation of gene expression	2.56E-04
22	GO:0010206: photosystem II repair	5.69E-04
23	GO:0018160: peptidyl-pyrromethane cofactor linkage	7.69E-04
24	GO:0032543: mitochondrial translation	7.69E-04
25	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	7.69E-04
26	GO:0009959: negative gravitropism	7.69E-04
27	GO:0006788: heme oxidation	7.69E-04
28	GO:0009407: toxin catabolic process	1.28E-03
29	GO:0016556: mRNA modification	1.58E-03
30	GO:0030308: negative regulation of cell growth	1.77E-03
31	GO:0019481: L-alanine catabolic process, by transamination	1.77E-03
32	GO:0010024: phytochromobilin biosynthetic process	1.77E-03
33	GO:0009642: response to light intensity	1.77E-03
34	GO:0006779: porphyrin-containing compound biosynthetic process	1.91E-03
35	GO:0042793: transcription from plastid promoter	2.64E-03
36	GO:0009231: riboflavin biosynthetic process	2.93E-03
37	GO:0009247: glycolipid biosynthetic process	2.93E-03
38	GO:0015867: ATP transport	2.93E-03
39	GO:0019760: glucosinolate metabolic process	2.93E-03
40	GO:0006450: regulation of translational fidelity	2.93E-03
41	GO:0010038: response to metal ion	2.93E-03
42	GO:0051085: chaperone mediated protein folding requiring cofactor	2.93E-03
43	GO:0010731: protein glutathionylation	2.93E-03
44	GO:0016075: rRNA catabolic process	2.93E-03
45	GO:0008299: isoprenoid biosynthetic process	3.07E-03
46	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.60E-03
47	GO:0045037: protein import into chloroplast stroma	4.35E-03
48	GO:0019375: galactolipid biosynthetic process	4.35E-03
49	GO:0045038: protein import into chloroplast thylakoid membrane	4.35E-03
50	GO:0000373: Group II intron splicing	4.35E-03
51	GO:0042026: protein refolding	4.35E-03
52	GO:0044267: cellular protein metabolic process	4.63E-03
53	GO:0009627: systemic acquired resistance	5.20E-03
54	GO:0009308: amine metabolic process	5.92E-03
55	GO:0010207: photosystem II assembly	7.62E-03
56	GO:0000105: histidine biosynthetic process	7.67E-03
57	GO:0006749: glutathione metabolic process	7.67E-03
58	GO:0031347: regulation of defense response	7.67E-03
59	GO:0045893: positive regulation of transcription, DNA-templated	9.07E-03
60	GO:0009902: chloroplast relocation	9.55E-03
61	GO:0006520: cellular amino acid metabolic process	9.55E-03
62	GO:0032880: regulation of protein localization	9.58E-03
63	GO:0009704: de-etiolation	9.58E-03
64	GO:0010583: response to cyclopentenone	9.58E-03
65	GO:0033014: tetrapyrrole biosynthetic process	9.58E-03
66	GO:0006189: 'de novo' IMP biosynthetic process	9.58E-03
67	GO:0034660: ncRNA metabolic process	9.58E-03
68	GO:0019538: protein metabolic process	9.58E-03
69	GO:0006396: RNA processing	9.60E-03
70	GO:0009735: response to cytokinin	1.13E-02
71	GO:0009408: response to heat	1.14E-02
72	GO:0051604: protein maturation	1.16E-02
73	GO:0045087: innate immune response	1.38E-02
74	GO:0001666: response to hypoxia	1.38E-02
75	GO:0000302: response to reactive oxygen species	1.62E-02
76	GO:0008380: RNA splicing	1.86E-02
77	GO:0009723: response to ethylene	2.13E-02
78	GO:0006184: obsolete GTP catabolic process	2.33E-02
79	GO:0006655: phosphatidylglycerol biosynthetic process	2.68E-02
80	GO:0051607: defense response to virus	2.68E-02
81	GO:0045454: cell redox homeostasis	2.72E-02
82	GO:0009409: response to cold	2.78E-02
83	GO:0009630: gravitropism	3.28E-02
84	GO:0019684: photosynthesis, light reaction	3.60E-02
85	GO:0009657: plastid organization	3.60E-02
86	GO:0010267: production of ta-siRNAs involved in RNA interference	3.93E-02
87	GO:0016036: cellular response to phosphate starvation	3.93E-02
88	GO:0035196: production of miRNAs involved in gene silencing by miRNA	3.93E-02
89	GO:0008219: cell death	3.93E-02
90	GO:0010103: stomatal complex morphogenesis	4.27E-02
91	GO:0006807: nitrogen compound metabolic process	4.62E-02
92	GO:0035304: regulation of protein dephosphorylation	4.62E-02
93	GO:0009058: biosynthetic process	4.92E-02
94	GO:0006869: lipid transport	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
2	GO:0042586: peptide deformylase activity	0.00E+00
3	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
4	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
5	GO:0003919: FMN adenylyltransferase activity	0.00E+00
6	GO:0003879: ATP phosphoribosyltransferase activity	0.00E+00
7	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
8	GO:0004585: ornithine carbamoyltransferase activity	0.00E+00
9	GO:0051082: unfolded protein binding	1.98E-06
10	GO:0004853: uroporphyrinogen decarboxylase activity	1.93E-05
11	GO:0016743: carboxyl- or carbamoyltransferase activity	6.66E-05
12	GO:0000774: adenyl-nucleotide exchange factor activity	6.66E-05
13	GO:0016817: hydrolase activity, acting on acid anhydrides	3.97E-04
14	GO:0005507: copper ion binding	4.80E-04
15	GO:0004525: ribonuclease III activity	5.69E-04
16	GO:0008565: protein transporter activity	7.53E-04
17	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	7.69E-04
18	GO:0004418: hydroxymethylbilane synthase activity	7.69E-04
19	GO:0045174: glutathione dehydrogenase (ascorbate) activity	7.69E-04
20	GO:0004362: glutathione-disulfide reductase activity	7.69E-04
21	GO:0008146: sulfotransferase activity	7.69E-04
22	GO:0051087: chaperone binding	7.71E-04
23	GO:0046914: transition metal ion binding	1.58E-03
24	GO:0005347: ATP transmembrane transporter activity	1.77E-03
25	GO:0004392: heme oxygenase (decyclizing) activity	1.77E-03
26	GO:0005496: steroid binding	1.77E-03
27	GO:0016630: protochlorophyllide reductase activity	1.77E-03
28	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.77E-03
29	GO:0047134: protein-disulfide reductase activity	1.77E-03
30	GO:0004252: serine-type endopeptidase activity	2.37E-03
31	GO:0003959: NADPH dehydrogenase activity	2.93E-03
32	GO:0016831: carboxy-lyase activity	3.56E-03
33	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	4.35E-03
34	GO:0042803: protein homodimerization activity	5.91E-03
35	GO:0031072: heat shock protein binding	6.49E-03
36	GO:0008173: RNA methyltransferase activity	7.67E-03
37	GO:0016597: amino acid binding	8.72E-03
38	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	9.58E-03
39	GO:0005525: GTP binding	1.18E-02
40	GO:0008266: poly(U) RNA binding	1.38E-02
41	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.62E-02
42	GO:0003690: double-stranded DNA binding	2.12E-02
43	GO:0048038: quinone binding	2.98E-02
44	GO:0005524: ATP binding	3.04E-02
45	GO:0000287: magnesium ion binding	3.37E-02
46	GO:0015035: protein disulfide oxidoreductase activity	4.19E-02

Rank	GO Term	Adjusted P value
1	GO:0042646: plastid nucleoid	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0009526: plastid envelope	0.00E+00
4	GO:0009507: chloroplast	6.09E-18
5	GO:0009941: chloroplast envelope	1.69E-11
6	GO:0009570: chloroplast stroma	1.98E-10
7	GO:0009535: chloroplast thylakoid membrane	7.54E-09
8	GO:0009579: thylakoid	2.07E-04
9	GO:0019867: outer membrane	7.69E-04
10	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	7.69E-04
11	GO:0009532: plastid stroma	7.71E-04
12	GO:0005759: mitochondrial matrix	1.27E-03
13	GO:0009536: plastid	1.44E-03
14	GO:0009533: chloroplast stromal thylakoid	1.77E-03
15	GO:0009707: chloroplast outer membrane	5.92E-03
16	GO:0009840: chloroplastic endopeptidase Clp complex	5.92E-03
17	GO:0019898: extrinsic component of membrane	7.67E-03
18	GO:0009654: photosystem II oxygen evolving complex	9.58E-03
19	GO:0005739: mitochondrion	1.02E-02
20	GO:0010319: stromule	1.53E-02
21	GO:0031977: thylakoid lumen	1.64E-02
22	GO:0009295: nucleoid	2.12E-02
23	GO:0042651: thylakoid membrane	2.68E-02
24	GO:0009543: chloroplast thylakoid lumen	2.68E-02
25	GO:0009534: chloroplast thylakoid	2.69E-02
26	GO:0048046: apoplast	3.49E-02