co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G029543

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071486: cellular response to high light intensity	0.00E+00
2	GO:0043043: peptide biosynthetic process	0.00E+00
3	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
4	GO:0090391: granum assembly	0.00E+00
5	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
6	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
7	GO:0006412: translation	2.04E-10
8	GO:0045036: protein targeting to chloroplast	2.96E-08
9	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.24E-07
10	GO:0009658: chloroplast organization	6.02E-07
11	GO:0032544: plastid translation	9.62E-06
12	GO:0010027: thylakoid membrane organization	1.23E-05
13	GO:0015995: chlorophyll biosynthetic process	2.68E-05
14	GO:0006779: porphyrin-containing compound biosynthetic process	5.33E-05
15	GO:0042793: transcription from plastid promoter	9.24E-05
16	GO:0035304: regulation of protein dephosphorylation	3.05E-04
17	GO:0033014: tetrapyrrole biosynthetic process	3.20E-04
18	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	5.25E-04
19	GO:0006430: lysyl-tRNA aminoacylation	5.25E-04
20	GO:0006429: leucyl-tRNA aminoacylation	5.25E-04
21	GO:0008361: regulation of cell size	5.25E-04
22	GO:0010158: abaxial cell fate specification	5.25E-04
23	GO:0006433: prolyl-tRNA aminoacylation	5.25E-04
24	GO:0032543: mitochondrial translation	5.25E-04
25	GO:0006282: regulation of DNA repair	5.25E-04
26	GO:0009902: chloroplast relocation	6.08E-04
27	GO:0006364: rRNA processing	7.38E-04
28	GO:0009735: response to cytokinin	7.66E-04
29	GO:0006546: glycine catabolic process	1.11E-03
30	GO:0010109: regulation of photosynthesis	1.22E-03
31	GO:0048653: anther development	1.22E-03
32	GO:0010380: regulation of chlorophyll biosynthetic process	1.22E-03
33	GO:0044272: sulfur compound biosynthetic process	1.22E-03
34	GO:1901671: positive regulation of superoxide dismutase activity	1.22E-03
35	GO:0019464: glycine decarboxylation via glycine cleavage system	1.22E-03
36	GO:0006655: phosphatidylglycerol biosynthetic process	1.56E-03
37	GO:0031408: oxylipin biosynthetic process	1.56E-03
38	GO:0006418: tRNA aminoacylation for protein translation	1.64E-03
39	GO:0009247: glycolipid biosynthetic process	2.03E-03
40	GO:0010143: cutin biosynthetic process	2.03E-03
41	GO:0000304: response to singlet oxygen	2.03E-03
42	GO:0006571: tyrosine biosynthetic process	2.03E-03
43	GO:0006450: regulation of translational fidelity	2.03E-03
44	GO:0006733: oxidoreduction coenzyme metabolic process	2.03E-03
45	GO:0048833: specification of floral organ number	2.03E-03
46	GO:0030497: fatty acid elongation	2.03E-03
47	GO:0034599: cellular response to oxidative stress	2.03E-03
48	GO:0009793: embryo development ending in seed dormancy	2.07E-03
49	GO:0007389: pattern specification process	2.96E-03
50	GO:0030259: lipid glycosylation	2.96E-03
51	GO:0019216: regulation of lipid metabolic process	2.96E-03
52	GO:0009117: nucleotide metabolic process	2.96E-03
53	GO:0045037: protein import into chloroplast stroma	2.96E-03
54	GO:0006353: DNA-templated transcription, termination	2.96E-03
55	GO:0019375: galactolipid biosynthetic process	2.96E-03
56	GO:0009695: jasmonic acid biosynthetic process	3.74E-03
57	GO:0010207: photosystem II assembly	3.76E-03
58	GO:0001676: long-chain fatty acid metabolic process	4.05E-03
59	GO:0000096: sulfur amino acid metabolic process	4.05E-03
60	GO:0010072: primary shoot apical meristem specification	4.05E-03
61	GO:0019748: secondary metabolic process	4.05E-03
62	GO:0045893: positive regulation of transcription, DNA-templated	4.50E-03
63	GO:0035556: intracellular signal transduction	4.58E-03
64	GO:0042742: defense response to bacterium	4.73E-03
65	GO:0000105: histidine biosynthetic process	5.23E-03
66	GO:0000160: phosphorelay signal transduction system	5.99E-03
67	GO:0006766: vitamin metabolic process	6.52E-03
68	GO:0009411: response to UV	6.52E-03
69	GO:0009108: coenzyme biosynthetic process	6.52E-03
70	GO:0010025: wax biosynthetic process	6.52E-03
71	GO:0006801: superoxide metabolic process	6.52E-03
72	GO:0009926: auxin polar transport	6.52E-03
73	GO:0019538: protein metabolic process	6.52E-03
74	GO:0009106: lipoate metabolic process	6.52E-03
75	GO:0010205: photoinhibition	6.52E-03
76	GO:0016117: carotenoid biosynthetic process	7.63E-03
77	GO:0010099: regulation of photomorphogenesis	7.91E-03
78	GO:0006399: tRNA metabolic process	7.91E-03
79	GO:0008295: spermidine biosynthetic process	7.91E-03
80	GO:0009790: embryo development	8.22E-03
81	GO:0006098: pentose-phosphate shunt	8.25E-03
82	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	9.41E-03
83	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	9.41E-03
84	GO:0040007: growth	9.41E-03
85	GO:0010015: root morphogenesis	9.41E-03
86	GO:0048868: pollen tube development	9.41E-03
87	GO:0009072: aromatic amino acid family metabolic process	9.41E-03
88	GO:0006633: fatty acid biosynthetic process	9.44E-03
89	GO:0016226: iron-sulfur cluster assembly	9.48E-03
90	GO:0009407: toxin catabolic process	1.10E-02
91	GO:0009832: plant-type cell wall biogenesis	1.10E-02
92	GO:0016556: mRNA modification	1.26E-02
93	GO:0006354: DNA-templated transcription, elongation	1.26E-02
94	GO:0008652: cellular amino acid biosynthetic process	1.55E-02
95	GO:0009612: response to mechanical stimulus	1.62E-02
96	GO:0019722: calcium-mediated signaling	1.62E-02
97	GO:0048316: seed development	1.82E-02
98	GO:0010075: regulation of meristem growth	2.02E-02
99	GO:0034976: response to endoplasmic reticulum stress	2.22E-02
100	GO:0019684: photosynthesis, light reaction	2.44E-02
101	GO:0007623: circadian rhythm	2.44E-02
102	GO:0030154: cell differentiation	2.44E-02
103	GO:0008610: lipid biosynthetic process	2.66E-02
104	GO:0009664: plant-type cell wall organization	2.66E-02
105	GO:0009627: systemic acquired resistance	2.89E-02
106	GO:0010103: stomatal complex morphogenesis	2.89E-02
107	GO:0009553: embryo sac development	3.37E-02
108	GO:0009817: defense response to fungus, incompatible interaction	3.37E-02
109	GO:0009620: response to fungus	3.37E-02
110	GO:0048367: shoot system development	3.37E-02
111	GO:0042254: ribosome biogenesis	3.87E-02
112	GO:0009846: pollen germination	4.14E-02
113	GO:0009933: meristem structural organization	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
2	GO:0046408: chlorophyll synthetase activity	0.00E+00
3	GO:0004399: histidinol dehydrogenase activity	0.00E+00
4	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
5	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
6	GO:0003735: structural constituent of ribosome	2.74E-09
7	GO:0016851: magnesium chelatase activity	5.25E-04
8	GO:0004823: leucine-tRNA ligase activity	5.25E-04
9	GO:0031957: very long-chain fatty acid-CoA ligase activity	5.25E-04
10	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	5.25E-04
11	GO:0035250: UDP-galactosyltransferase activity	5.25E-04
12	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	5.25E-04
13	GO:0031177: phosphopantetheine binding	5.25E-04
14	GO:0004467: long-chain fatty acid-CoA ligase activity	5.25E-04
15	GO:0008194: UDP-glycosyltransferase activity	5.25E-04
16	GO:0004824: lysine-tRNA ligase activity	5.25E-04
17	GO:0004827: proline-tRNA ligase activity	5.25E-04
18	GO:0003989: acetyl-CoA carboxylase activity	5.25E-04
19	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	5.25E-04
20	GO:0019843: rRNA binding	5.37E-04
21	GO:0004252: serine-type endopeptidase activity	1.02E-03
22	GO:0051920: peroxiredoxin activity	1.22E-03
23	GO:0008977: prephenate dehydrogenase (NAD+) activity	1.22E-03
24	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.22E-03
25	GO:0004665: prephenate dehydrogenase (NADP+) activity	1.22E-03
26	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.22E-03
27	GO:0004075: biotin carboxylase activity	1.22E-03
28	GO:0045485: omega-6 fatty acid desaturase activity	1.22E-03
29	GO:0000156: phosphorelay response regulator activity	1.80E-03
30	GO:0004812: aminoacyl-tRNA ligase activity	1.92E-03
31	GO:0032549: ribonucleoside binding	2.03E-03
32	GO:0016209: antioxidant activity	2.96E-03
33	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	2.96E-03
34	GO:0004659: prenyltransferase activity	2.96E-03
35	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	6.52E-03
36	GO:0004784: superoxide dismutase activity	7.91E-03
37	GO:0008312: 7S RNA binding	7.91E-03
38	GO:0042578: phosphoric ester hydrolase activity	9.41E-03
39	GO:0046914: transition metal ion binding	1.26E-02
40	GO:0048037: cofactor binding	1.44E-02
41	GO:0043531: ADP binding	1.44E-02
42	GO:0008233: peptidase activity	1.75E-02
43	GO:0008081: phosphoric diester hydrolase activity	2.02E-02
44	GO:0016760: cellulose synthase (UDP-forming) activity	2.02E-02
45	GO:0051287: NAD binding	2.65E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	2.46E-25
2	GO:0009941: chloroplast envelope	4.18E-23
3	GO:0009507: chloroplast	3.79E-22
4	GO:0005840: ribosome	2.63E-11
5	GO:0030529: intracellular ribonucleoprotein complex	5.59E-07
6	GO:0009840: chloroplastic endopeptidase Clp complex	1.52E-06
7	GO:0009579: thylakoid	4.54E-06
8	GO:0009532: plastid stroma	1.12E-05
9	GO:0009706: chloroplast inner membrane	4.73E-04
10	GO:0005622: intracellular	5.13E-04
11	GO:0000311: plastid large ribosomal subunit	5.25E-04
12	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	5.25E-04
13	GO:0005960: glycine cleavage complex	5.25E-04
14	GO:0009295: nucleoid	1.11E-03
15	GO:0009536: plastid	1.64E-03
16	GO:0009534: chloroplast thylakoid	2.37E-03
17	GO:0048500: signal recognition particle	6.52E-03
18	GO:0015934: large ribosomal subunit	8.84E-03
19	GO:0015935: small ribosomal subunit	9.48E-03
20	GO:0009535: chloroplast thylakoid membrane	1.56E-02
21	GO:0048046: apoplast	4.28E-02