Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G028302

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0030494: bacteriochlorophyll biosynthetic process0.00E+00
2GO:0032544: plastid translation0.00E+00
3GO:0051188: cofactor biosynthetic process0.00E+00
4GO:0043043: peptide biosynthetic process0.00E+00
5GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.88E-16
6GO:0006412: translation1.08E-13
7GO:0009902: chloroplast relocation2.73E-12
8GO:0010207: photosystem II assembly3.38E-11
9GO:0042793: transcription from plastid promoter1.14E-10
10GO:0010027: thylakoid membrane organization1.71E-10
11GO:0015995: chlorophyll biosynthetic process2.64E-10
12GO:0006364: rRNA processing3.41E-10
13GO:0045036: protein targeting to chloroplast6.89E-09
14GO:0006098: pentose-phosphate shunt3.14E-07
15GO:0035304: regulation of protein dephosphorylation5.00E-06
16GO:0009773: photosynthetic electron transport in photosystem I5.00E-06
17GO:0000096: sulfur amino acid metabolic process7.40E-05
18GO:0045893: positive regulation of transcription, DNA-templated2.90E-04
19GO:0018160: peptidyl-pyrromethane cofactor linkage3.58E-04
20GO:0006573: valine metabolic process3.58E-04
21GO:0009069: serine family amino acid metabolic process3.58E-04
22GO:0006430: lysyl-tRNA aminoacylation3.58E-04
23GO:0008361: regulation of cell size3.58E-04
24GO:0006434: seryl-tRNA aminoacylation3.58E-04
25GO:0016117: carotenoid biosynthetic process4.57E-04
26GO:0006354: DNA-templated transcription, elongation5.20E-04
27GO:0016226: iron-sulfur cluster assembly6.15E-04
28GO:0009658: chloroplast organization8.05E-04
29GO:0048653: anther development8.41E-04
30GO:0044272: sulfur compound biosynthetic process8.41E-04
31GO:0006655: phosphatidylglycerol biosynthetic process8.99E-04
32GO:0030154: cell differentiation1.39E-03
33GO:0009247: glycolipid biosynthetic process1.42E-03
34GO:0006733: oxidoreduction coenzyme metabolic process1.42E-03
35GO:0009117: nucleotide metabolic process2.07E-03
36GO:0019375: galactolipid biosynthetic process2.07E-03
37GO:0007389: pattern specification process2.07E-03
38GO:0030259: lipid glycosylation2.07E-03
39GO:0019216: regulation of lipid metabolic process2.07E-03
40GO:0009695: jasmonic acid biosynthetic process2.18E-03
41GO:0019748: secondary metabolic process2.77E-03
42GO:0007005: mitochondrion organization3.60E-03
43GO:0009735: response to cytokinin3.79E-03
44GO:0006662: glycerol ether metabolic process4.11E-03
45GO:0009073: aromatic amino acid family biosynthetic process4.11E-03
46GO:0009106: lipoate metabolic process4.50E-03
47GO:0010205: photoinhibition4.50E-03
48GO:0006766: vitamin metabolic process4.50E-03
49GO:0009108: coenzyme biosynthetic process4.50E-03
50GO:0033014: tetrapyrrole biosynthetic process4.50E-03
51GO:0010206: photosystem II repair4.50E-03
52GO:0034660: ncRNA metabolic process4.50E-03
53GO:0009926: auxin polar transport4.50E-03
54GO:0015979: photosynthesis4.72E-03
55GO:0009790: embryo development4.78E-03
56GO:0006399: tRNA metabolic process5.43E-03
57GO:0009072: aromatic amino acid family metabolic process6.45E-03
58GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.45E-03
59GO:0040007: growth6.45E-03
60GO:0010015: root morphogenesis6.45E-03
61GO:0006418: tRNA aminoacylation for protein translation6.72E-03
62GO:0009832: plant-type cell wall biogenesis7.53E-03
63GO:0010411: xyloglucan metabolic process7.53E-03
64GO:0042742: defense response to bacterium7.70E-03
65GO:0006073: cellular glucan metabolic process8.66E-03
66GO:0016556: mRNA modification8.66E-03
67GO:0008652: cellular amino acid biosynthetic process9.03E-03
68GO:0006779: porphyrin-containing compound biosynthetic process9.86E-03
69GO:0006546: glycine catabolic process9.86E-03
70GO:0042546: cell wall biogenesis1.11E-02
71GO:0009965: leaf morphogenesis1.11E-02
72GO:0031408: oxylipin biosynthetic process1.24E-02
73GO:0010075: regulation of meristem growth1.38E-02
74GO:0042545: cell wall modification1.52E-02
75GO:0009657: plastid organization1.66E-02
76GO:0019684: photosynthesis, light reaction1.66E-02
77GO:0007623: circadian rhythm1.66E-02
78GO:0009793: embryo development ending in seed dormancy1.72E-02
79GO:0009664: plant-type cell wall organization1.81E-02
80GO:0006352: DNA-templated transcription, initiation1.97E-02
81GO:0010103: stomatal complex morphogenesis1.97E-02
82GO:0009620: response to fungus2.29E-02
83GO:0009817: defense response to fungus, incompatible interaction2.29E-02
84GO:0042254: ribosome biogenesis2.64E-02
85GO:0035556: intracellular signal transduction2.64E-02
86GO:0000160: phosphorelay signal transduction system3.19E-02
87GO:0045454: cell redox homeostasis3.50E-02
88GO:0019344: cysteine biosynthetic process3.77E-02
89GO:0010114: response to red light4.18E-02
90GO:0048481: plant ovule development4.82E-02
RankGO TermAdjusted P value
1GO:0030267: glyoxylate reductase (NADP) activity0.00E+00
2GO:0045550: geranylgeranyl reductase activity0.00E+00
3GO:0046408: chlorophyll synthetase activity0.00E+00
4GO:0003735: structural constituent of ribosome2.33E-13
5GO:0004824: lysine-tRNA ligase activity3.58E-04
6GO:0004418: hydroxymethylbilane synthase activity3.58E-04
7GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor3.58E-04
8GO:0016851: magnesium chelatase activity3.58E-04
9GO:0004828: serine-tRNA ligase activity3.58E-04
10GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity3.58E-04
11GO:0035250: UDP-galactosyltransferase activity3.58E-04
12GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity3.58E-04
13GO:0031177: phosphopantetheine binding3.58E-04
14GO:0008194: UDP-glycosyltransferase activity3.58E-04
15GO:0045485: omega-6 fatty acid desaturase activity8.41E-04
16GO:0051920: peroxiredoxin activity8.41E-04
17GO:0016209: antioxidant activity2.07E-03
18GO:0071949: FAD binding2.07E-03
19GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity2.07E-03
20GO:0004659: prenyltransferase activity2.07E-03
21GO:0016987: sigma factor activity2.77E-03
22GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity2.77E-03
23GO:0019843: rRNA binding2.91E-03
24GO:0008312: 7S RNA binding5.43E-03
25GO:0004812: aminoacyl-tRNA ligase activity7.60E-03
26GO:0016762: xyloglucan:xyloglucosyl transferase activity8.66E-03
27GO:0003899: DNA-directed 5'-3' RNA polymerase activity9.54E-03
28GO:0000156: phosphorelay response regulator activity1.38E-02
29GO:0016760: cellulose synthase (UDP-forming) activity1.38E-02
30GO:0015035: protein disulfide oxidoreductase activity1.41E-02
31GO:0004252: serine-type endopeptidase activity1.82E-02
32GO:0031072: heat shock protein binding2.29E-02
33GO:0003746: translation elongation factor activity4.39E-02
RankGO TermAdjusted P value
1GO:0009570: chloroplast stroma2.97E-25
2GO:0009507: chloroplast3.00E-24
3GO:0009941: chloroplast envelope8.25E-23
4GO:0005840: ribosome3.38E-18
5GO:0030529: intracellular ribonucleoprotein complex2.53E-09
6GO:0005622: intracellular3.03E-07
7GO:0009579: thylakoid4.83E-05
8GO:0009534: chloroplast thylakoid1.18E-04
9GO:0000311: plastid large ribosomal subunit3.58E-04
10GO:0009535: chloroplast thylakoid membrane1.59E-03
11GO:0009840: chloroplastic endopeptidase Clp complex2.77E-03
12GO:0048500: signal recognition particle4.50E-03
13GO:0015934: large ribosomal subunit5.13E-03
14GO:0009536: plastid9.71E-03
15GO:0042651: thylakoid membrane1.24E-02
16GO:0009543: chloroplast thylakoid lumen1.24E-02
17GO:0019013: viral nucleocapsid2.13E-02
18GO:0009706: chloroplast inner membrane2.64E-02
19GO:0005875: microtubule associated complex3.97E-02
20GO:0010319: stromule4.18E-02