co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G027219

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901259: chloroplast rRNA processing	0.00E+00
2	GO:0035436: triose phosphate transmembrane transport	0.00E+00
3	GO:0090342: regulation of cell aging	0.00E+00
4	GO:0015714: phosphoenolpyruvate transport	0.00E+00
5	GO:0032544: plastid translation	0.00E+00
6	GO:0051188: cofactor biosynthetic process	0.00E+00
7	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
8	GO:0043043: peptide biosynthetic process	0.00E+00
9	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
10	GO:0042821: pyridoxal biosynthetic process	0.00E+00
11	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
12	GO:0042550: photosystem I stabilization	0.00E+00
13	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
14	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	0.00E+00
15	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
16	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.79E-19
17	GO:0010027: thylakoid membrane organization	4.02E-19
18	GO:0010207: photosystem II assembly	1.80E-14
19	GO:0006098: pentose-phosphate shunt	7.64E-14
20	GO:0009773: photosynthetic electron transport in photosystem I	3.50E-10
21	GO:0015995: chlorophyll biosynthetic process	7.55E-10
22	GO:0015979: photosynthesis	8.93E-10
23	GO:0006364: rRNA processing	1.03E-09
24	GO:0009902: chloroplast relocation	3.35E-09
25	GO:0042793: transcription from plastid promoter	2.79E-08
26	GO:0016117: carotenoid biosynthetic process	3.21E-07
27	GO:0045036: protein targeting to chloroplast	7.19E-07
28	GO:0010206: photosystem II repair	8.56E-07
29	GO:0006412: translation	1.05E-06
30	GO:0043085: positive regulation of catalytic activity	6.99E-06
31	GO:0016226: iron-sulfur cluster assembly	1.15E-05
32	GO:0000023: maltose metabolic process	1.70E-05
33	GO:0009767: photosynthetic electron transport chain	3.34E-05
34	GO:0019252: starch biosynthetic process	4.59E-05
35	GO:0006636: unsaturated fatty acid biosynthetic process	4.62E-05
36	GO:0034660: ncRNA metabolic process	4.83E-05
37	GO:0019761: glucosinolate biosynthetic process	9.61E-05
38	GO:0009658: chloroplast organization	2.05E-04
39	GO:0016556: mRNA modification	2.45E-04
40	GO:0006354: DNA-templated transcription, elongation	2.45E-04
41	GO:0045038: protein import into chloroplast thylakoid membrane	3.02E-04
42	GO:0045037: protein import into chloroplast stroma	3.02E-04
43	GO:0000096: sulfur amino acid metabolic process	5.16E-04
44	GO:0006569: tryptophan catabolic process	5.16E-04
45	GO:0009813: flavonoid biosynthetic process	5.16E-04
46	GO:0030003: cellular cation homeostasis	1.12E-03
47	GO:0006766: vitamin metabolic process	1.12E-03
48	GO:0009108: coenzyme biosynthetic process	1.12E-03
49	GO:0009106: lipoate metabolic process	1.12E-03
50	GO:0010155: regulation of proton transport	1.14E-03
51	GO:0009768: photosynthesis, light harvesting in photosystem I	1.22E-03
52	GO:0009069: serine family amino acid metabolic process	1.22E-03
53	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	1.22E-03
54	GO:0009443: pyridoxal 5'-phosphate salvage	1.22E-03
55	GO:0006434: seryl-tRNA aminoacylation	1.22E-03
56	GO:0016050: vesicle organization	1.22E-03
57	GO:0006573: valine metabolic process	1.22E-03
58	GO:0032543: mitochondrial translation	1.22E-03
59	GO:0006399: tRNA metabolic process	1.51E-03
60	GO:0046777: protein autophosphorylation	1.56E-03
61	GO:0009684: indoleacetic acid biosynthetic process	2.43E-03
62	GO:0080167: response to karrikin	2.69E-03
63	GO:0006875: cellular metal ion homeostasis	2.73E-03
64	GO:0042372: phylloquinone biosynthetic process	2.73E-03
65	GO:0006432: phenylalanyl-tRNA aminoacylation	2.73E-03
66	GO:0009697: salicylic acid biosynthetic process	2.99E-03
67	GO:0009735: response to cytokinin	3.64E-03
68	GO:0006546: glycine catabolic process	3.65E-03
69	GO:0009765: photosynthesis, light harvesting	3.65E-03
70	GO:0009073: aromatic amino acid family biosynthetic process	4.05E-03
71	GO:0019760: glucosinolate metabolic process	4.65E-03
72	GO:0007186: G-protein coupled receptor signaling pathway	4.65E-03
73	GO:0006733: oxidoreduction coenzyme metabolic process	4.65E-03
74	GO:0016024: CDP-diacylglycerol biosynthetic process	4.65E-03
75	GO:0006655: phosphatidylglycerol biosynthetic process	5.13E-03
76	GO:0006014: D-ribose metabolic process	6.87E-03
77	GO:0050821: protein stabilization	6.87E-03
78	GO:0016485: protein processing	6.87E-03
79	GO:0051205: protein insertion into membrane	6.87E-03
80	GO:0009595: detection of biotic stimulus	6.87E-03
81	GO:0009117: nucleotide metabolic process	6.87E-03
82	GO:0006353: DNA-templated transcription, termination	6.87E-03
83	GO:0006418: tRNA aminoacylation for protein translation	7.66E-03
84	GO:0019684: photosynthesis, light reaction	7.89E-03
85	GO:0030154: cell differentiation	7.89E-03
86	GO:0009657: plastid organization	7.89E-03
87	GO:0018298: protein-chromophore linkage	8.95E-03
88	GO:0006414: translational elongation	8.97E-03
89	GO:0019748: secondary metabolic process	9.39E-03
90	GO:0070084: protein initiator methionine removal	9.39E-03
91	GO:0009308: amine metabolic process	9.39E-03
92	GO:0070838: divalent metal ion transport	9.39E-03
93	GO:0006796: phosphate-containing compound metabolic process	9.39E-03
94	GO:0060416: response to growth hormone	9.39E-03
95	GO:0009772: photosynthetic electron transport in photosystem II	9.39E-03
96	GO:0043900: regulation of multi-organism process	9.39E-03
97	GO:0034755: iron ion transmembrane transport	9.39E-03
98	GO:0010224: response to UV-B	1.13E-02
99	GO:0035304: regulation of protein dephosphorylation	1.13E-02
100	GO:0006568: tryptophan metabolic process	1.22E-02
101	GO:0009913: epidermal cell differentiation	1.22E-02
102	GO:0007005: mitochondrion organization	1.22E-02
103	GO:0009817: defense response to fungus, incompatible interaction	1.26E-02
104	GO:0009695: jasmonic acid biosynthetic process	1.26E-02
105	GO:0022900: electron transport chain	1.28E-02
106	GO:0006184: obsolete GTP catabolic process	1.49E-02
107	GO:0009704: de-etiolation	1.52E-02
108	GO:0009987: cellular process	1.52E-02
109	GO:0009411: response to UV	1.52E-02
110	GO:0009814: defense response, incompatible interaction	1.52E-02
111	GO:0010310: regulation of hydrogen peroxide metabolic process	1.85E-02
112	GO:0000413: protein peptidyl-prolyl isomerization	1.85E-02
113	GO:0015693: magnesium ion transport	1.85E-02
114	GO:0043039: tRNA aminoacylation	1.85E-02
115	GO:0045893: positive regulation of transcription, DNA-templated	2.09E-02
116	GO:0015977: carbon fixation	2.20E-02
117	GO:0009072: aromatic amino acid family metabolic process	2.20E-02
118	GO:0000162: tryptophan biosynthetic process	2.20E-02
119	GO:0009637: response to blue light	2.56E-02
120	GO:0009416: response to light stimulus	2.73E-02
121	GO:0010114: response to red light	2.97E-02
122	GO:0006006: glucose metabolic process	2.98E-02
123	GO:0048527: lateral root development	2.98E-02
124	GO:0006814: sodium ion transport	2.98E-02
125	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	3.39E-02
126	GO:0010218: response to far red light	3.40E-02
127	GO:0048481: plant ovule development	3.63E-02
128	GO:0042742: defense response to bacterium	3.81E-02
129	GO:0046854: phosphatidylinositol phosphorylation	3.83E-02
130	GO:0008033: tRNA processing	4.29E-02

Rank	GO Term	Adjusted P value
1	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
2	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
3	GO:0031409: pigment binding	0.00E+00
4	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
5	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
6	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
7	GO:0005504: fatty acid binding	0.00E+00
8	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
9	GO:0045550: geranylgeranyl reductase activity	0.00E+00
10	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
11	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
12	GO:0004802: transketolase activity	0.00E+00
13	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
14	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
15	GO:0003735: structural constituent of ribosome	1.82E-05
16	GO:0045430: chalcone isomerase activity	4.34E-05
17	GO:0016872: intramolecular lyase activity	1.43E-04
18	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.77E-04
19	GO:0016168: chlorophyll binding	1.14E-03
20	GO:0004618: phosphoglycerate kinase activity	1.22E-03
21	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.22E-03
22	GO:0015088: copper uptake transmembrane transporter activity	1.22E-03
23	GO:0004828: serine-tRNA ligase activity	1.22E-03
24	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.22E-03
25	GO:0070402: NADPH binding	1.22E-03
26	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.22E-03
27	GO:0051537: 2 iron, 2 sulfur cluster binding	1.78E-03
28	GO:0000049: tRNA binding	2.43E-03
29	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	2.73E-03
30	GO:0004605: phosphatidate cytidylyltransferase activity	2.73E-03
31	GO:0004826: phenylalanine-tRNA ligase activity	2.73E-03
32	GO:0033897: ribonuclease T2 activity	4.65E-03
33	GO:0003746: translation elongation factor activity	5.93E-03
34	GO:0009055: electron carrier activity	6.37E-03
35	GO:0004765: shikimate kinase activity	6.87E-03
36	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	6.87E-03
37	GO:0016984: ribulose-bisphosphate carboxylase activity	6.87E-03
38	GO:0016209: antioxidant activity	6.87E-03
39	GO:0071949: FAD binding	6.87E-03
40	GO:0004332: fructose-bisphosphate aldolase activity	6.87E-03
41	GO:0004747: ribokinase activity	6.87E-03
42	GO:0004812: aminoacyl-tRNA ligase activity	8.97E-03
43	GO:0005381: iron ion transmembrane transporter activity	9.39E-03
44	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	9.39E-03
45	GO:0070006: metalloaminopeptidase activity	9.39E-03
46	GO:0004834: tryptophan synthase activity	1.22E-02
47	GO:0008235: metalloexopeptidase activity	1.22E-02
48	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	1.52E-02
49	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.52E-02
50	GO:0019843: rRNA binding	1.69E-02
51	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.19E-02
52	GO:0004427: inorganic diphosphatase activity	2.20E-02
53	GO:0051536: iron-sulfur cluster binding	2.33E-02
54	GO:0004177: aminopeptidase activity	2.58E-02
55	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.58E-02
56	GO:0015095: magnesium ion transmembrane transporter activity	2.58E-02
57	GO:0046873: metal ion transmembrane transporter activity	2.58E-02
58	GO:0004252: serine-type endopeptidase activity	2.73E-02
59	GO:0003690: double-stranded DNA binding	3.39E-02
60	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.39E-02
61	GO:0048038: quinone binding	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0009782: photosystem I antenna complex	0.00E+00
2	GO:0009512: cytochrome b6f complex	0.00E+00
3	GO:0030093: chloroplast photosystem I	0.00E+00
4	GO:0009507: chloroplast	2.90E-47
5	GO:0009570: chloroplast stroma	2.35E-26
6	GO:0009941: chloroplast envelope	1.26E-25
7	GO:0009535: chloroplast thylakoid membrane	3.03E-23
8	GO:0009579: thylakoid	2.11E-15
9	GO:0009543: chloroplast thylakoid lumen	6.83E-12
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.11E-09
11	GO:0009534: chloroplast thylakoid	1.55E-08
12	GO:0031977: thylakoid lumen	3.56E-08
13	GO:0005840: ribosome	2.50E-07
14	GO:0009295: nucleoid	1.57E-05
15	GO:0009523: photosystem II	5.55E-05
16	GO:0009508: plastid chromosome	5.16E-04
17	GO:0000311: plastid large ribosomal subunit	1.22E-03
18	GO:0009527: plastid outer membrane	1.22E-03
19	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.22E-03
20	GO:0009528: plastid inner membrane	1.22E-03
21	GO:0042406: extrinsic component of endoplasmic reticulum membrane	1.22E-03
22	GO:0030529: intracellular ribonucleoprotein complex	1.71E-03
23	GO:0055028: cortical microtubule	4.65E-03
24	GO:0010319: stromule	5.41E-03
25	GO:0015934: large ribosomal subunit	5.41E-03
26	GO:0010287: plastoglobule	1.12E-02
27	GO:0009522: photosystem I	1.13E-02
28	GO:0019898: extrinsic component of membrane	1.22E-02
29	GO:0005622: intracellular	1.28E-02
30	GO:0009654: photosystem II oxygen evolving complex	1.52E-02
31	GO:0009532: plastid stroma	1.85E-02
32	GO:0016020: membrane	3.31E-02
33	GO:0048046: apoplast	4.23E-02
34	GO:0042651: thylakoid membrane	4.29E-02