Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G025592

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010389: regulation of G2/M transition of mitotic cell cycle3.95E-08
2GO:0009909: regulation of flower development2.04E-06
3GO:0006275: regulation of DNA replication4.75E-05
4GO:0006260: DNA replication5.03E-05
5GO:0007049: cell cycle6.24E-05
6GO:0048449: floral organ formation6.28E-05
7GO:0006342: chromatin silencing8.53E-05
8GO:0016572: histone phosphorylation8.53E-05
9GO:0051567: histone H3-K9 methylation1.37E-04
10GO:0048453: sepal formation1.43E-04
11GO:0031507: heterochromatin assembly1.49E-04
12GO:0010026: trichome differentiation1.49E-04
13GO:0006306: DNA methylation1.66E-04
14GO:0048451: petal formation1.77E-04
15GO:0051301: cell division2.33E-04
16GO:0008283: cell proliferation2.33E-04
17GO:0007018: microtubule-based movement2.74E-04
18GO:0009755: hormone-mediated signaling pathway3.66E-04
19GO:0043987: histone H3-S10 phosphorylation3.66E-04
20GO:0042547: cell wall modification involved in multidimensional cell growth3.66E-04
21GO:0006310: DNA recombination4.68E-04
22GO:0009957: epidermal cell fate specification6.27E-04
23GO:0007094: mitotic spindle assembly checkpoint6.27E-04
24GO:0022904: respiratory electron transport chain6.27E-04
25GO:0001558: regulation of cell growth6.27E-04
26GO:0009933: meristem structural organization9.88E-04
27GO:0032875: regulation of DNA endoreduplication1.27E-03
28GO:0006265: DNA topological change1.27E-03
29GO:0010087: phloem or xylem histogenesis1.63E-03
30GO:0007267: cell-cell signaling1.63E-03
31GO:0000911: cytokinesis by cell plate formation1.82E-03
32GO:0009934: regulation of meristem structural organization2.01E-03
33GO:0010583: response to cyclopentenone2.01E-03
34GO:0030245: cellulose catabolic process2.40E-03
35GO:0010074: maintenance of meristem identity2.40E-03
36GO:0010048: vernalization response3.81E-03
37GO:0009616: virus induced gene silencing3.81E-03
38GO:0006259: DNA metabolic process3.81E-03
39GO:0016570: histone modification3.81E-03
40GO:0009555: pollen development3.92E-03
41GO:0007020: microtubule nucleation4.34E-03
42GO:0019915: lipid storage4.34E-03
43GO:0051225: spindle assembly4.34E-03
44GO:0016571: histone methylation4.87E-03
45GO:0010332: response to gamma radiation4.87E-03
46GO:0031048: chromatin silencing by small RNA5.43E-03
47GO:0048316: seed development5.43E-03
48GO:0006406: mRNA export from nucleus5.43E-03
49GO:0010162: seed dormancy process6.02E-03
50GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity6.02E-03
51GO:0050826: response to freezing6.63E-03
52GO:0007062: sister chromatid cohesion6.63E-03
53GO:0006261: DNA-dependent DNA replication6.63E-03
54GO:0000724: double-strand break repair via homologous recombination7.26E-03
55GO:0035196: production of miRNAs involved in gene silencing by miRNA7.90E-03
56GO:0009966: regulation of signal transduction7.90E-03
57GO:0010267: production of ta-siRNAs involved in RNA interference7.90E-03
58GO:0010182: sugar mediated signaling pathway9.26E-03
59GO:0006334: nucleosome assembly9.74E-03
60GO:0009553: embryo sac development9.97E-03
61GO:0006346: methylation-dependent chromatin silencing9.97E-03
62GO:0006281: DNA repair1.00E-02
63GO:0009845: seed germination1.14E-02
64GO:0031047: gene silencing by RNA1.22E-02
65GO:0006270: DNA replication initiation1.38E-02
66GO:0009560: embryo sac egg cell differentiation1.38E-02
67GO:0000226: microtubule cytoskeleton organization1.38E-02
68GO:0016579: protein deubiquitination1.55E-02
69GO:0048366: leaf development1.63E-02
70GO:0051726: regulation of cell cycle1.72E-02
71GO:0009640: photomorphogenesis2.18E-02
72GO:0010228: vegetative to reproductive phase transition of meristem2.78E-02
73GO:0048364: root development3.11E-02
74GO:0045893: positive regulation of transcription, DNA-templated3.79E-02
RankGO TermAdjusted P value
1GO:0003916: DNA topoisomerase activity1.49E-04
2GO:0019905: syntaxin binding1.49E-04
3GO:0004693: cyclin-dependent protein serine/threonine kinase activity1.49E-04
4GO:0003777: microtubule motor activity2.74E-04
5GO:0035175: histone kinase activity (H3-S10 specific)3.66E-04
6GO:0008569: ATP-dependent microtubule motor activity, minus-end-directed3.66E-04
7GO:0008017: microtubule binding5.58E-04
8GO:0004748: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor6.27E-04
9GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity9.31E-04
10GO:0008810: cellulase activity2.01E-03
11GO:0003887: DNA-directed DNA polymerase activity2.40E-03
12GO:0016651: oxidoreductase activity, acting on NAD(P)H6.63E-03
13GO:0019901: protein kinase binding6.63E-03
RankGO TermAdjusted P value
1GO:0033186: CAF-1 complex0.00E+00
2GO:0019866: organelle inner membrane0.00E+00
3GO:0000307: cyclin-dependent protein kinase holoenzyme complex0.00E+00
4GO:0005871: kinesin complex2.53E-04
5GO:0005971: ribonucleoside-diphosphate reductase complex6.27E-04
6GO:0000776: kinetochore9.31E-04
7GO:0005875: microtubule associated complex1.48E-03
8GO:0005874: microtubule7.75E-03
9GO:0031966: mitochondrial membrane7.90E-03
10GO:0005819: spindle9.97E-03
11GO:0005635: nuclear envelope1.14E-02
12GO:0005694: chromosome1.20E-02
13GO:0009524: phragmoplast1.55E-02
14GO:0045271: respiratory chain complex I2.47E-02
15GO:0005743: mitochondrial inner membrane2.99E-02