co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G023289

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042821: pyridoxal biosynthetic process	0.00E+00
2	GO:0043953: protein transport by the Tat complex	0.00E+00
3	GO:0046506: sulfolipid biosynthetic process	0.00E+00
4	GO:1901259: chloroplast rRNA processing	0.00E+00
5	GO:0090342: regulation of cell aging	0.00E+00
6	GO:1900865: chloroplast RNA modification	0.00E+00
7	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
8	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
9	GO:0043043: peptide biosynthetic process	0.00E+00
10	GO:0010027: thylakoid membrane organization	2.01E-16
11	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.35E-14
12	GO:0006364: rRNA processing	2.30E-12
13	GO:0045036: protein targeting to chloroplast	2.91E-09
14	GO:0045038: protein import into chloroplast thylakoid membrane	5.35E-09
15	GO:0009306: protein secretion	1.04E-07
16	GO:0016226: iron-sulfur cluster assembly	1.15E-07
17	GO:0006098: pentose-phosphate shunt	1.23E-07
18	GO:0010207: photosystem II assembly	1.49E-07
19	GO:0006655: phosphatidylglycerol biosynthetic process	2.91E-07
20	GO:0009902: chloroplast relocation	4.36E-07
21	GO:0006399: tRNA metabolic process	5.79E-07
22	GO:0015995: chlorophyll biosynthetic process	6.84E-07
23	GO:0009073: aromatic amino acid family biosynthetic process	9.76E-07
24	GO:0010103: stomatal complex morphogenesis	2.00E-06
25	GO:0009658: chloroplast organization	4.53E-06
26	GO:0006779: porphyrin-containing compound biosynthetic process	5.18E-06
27	GO:0042793: transcription from plastid promoter	1.12E-05
28	GO:0006636: unsaturated fatty acid biosynthetic process	1.58E-05
29	GO:0042372: phylloquinone biosynthetic process	2.25E-05
30	GO:0045893: positive regulation of transcription, DNA-templated	4.42E-05
31	GO:0000023: maltose metabolic process	5.51E-05
32	GO:0006733: oxidoreduction coenzyme metabolic process	7.75E-05
33	GO:0019252: starch biosynthetic process	8.58E-05
34	GO:0016556: mRNA modification	1.11E-04
35	GO:0006546: glycine catabolic process	1.50E-04
36	GO:0006782: protoporphyrinogen IX biosynthetic process	1.67E-04
37	GO:0009117: nucleotide metabolic process	1.67E-04
38	GO:0043085: positive regulation of catalytic activity	1.79E-04
39	GO:0019344: cysteine biosynthetic process	2.89E-04
40	GO:0019748: secondary metabolic process	2.94E-04
41	GO:0006569: tryptophan catabolic process	2.94E-04
42	GO:0019684: photosynthesis, light reaction	4.70E-04
43	GO:0034660: ncRNA metabolic process	6.49E-04
44	GO:0009106: lipoate metabolic process	6.49E-04
45	GO:0006766: vitamin metabolic process	6.49E-04
46	GO:0009814: defense response, incompatible interaction	6.49E-04
47	GO:0009108: coenzyme biosynthetic process	6.49E-04
48	GO:0035304: regulation of protein dephosphorylation	7.69E-04
49	GO:0009773: photosynthetic electron transport in photosystem I	7.69E-04
50	GO:0016050: vesicle organization	8.42E-04
51	GO:0032543: mitochondrial translation	8.42E-04
52	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	8.42E-04
53	GO:0009443: pyridoxal 5'-phosphate salvage	8.42E-04
54	GO:0006429: leucyl-tRNA aminoacylation	8.42E-04
55	GO:0009684: indoleacetic acid biosynthetic process	1.45E-03
56	GO:0006184: obsolete GTP catabolic process	1.51E-03
57	GO:0009735: response to cytokinin	1.86E-03
58	GO:0005987: sucrose catabolic process	1.92E-03
59	GO:0019464: glycine decarboxylation via glycine cleavage system	1.92E-03
60	GO:0010236: plastoquinone biosynthetic process	1.92E-03
61	GO:0009688: abscisic acid biosynthetic process	1.92E-03
62	GO:0016117: carotenoid biosynthetic process	2.26E-03
63	GO:0019761: glucosinolate biosynthetic process	2.48E-03
64	GO:0051607: defense response to virus	2.99E-03
65	GO:0010731: protein glutathionylation	3.21E-03
66	GO:0016075: rRNA catabolic process	3.21E-03
67	GO:0043067: regulation of programmed cell death	3.21E-03
68	GO:0009247: glycolipid biosynthetic process	3.21E-03
69	GO:0019760: glucosinolate metabolic process	3.21E-03
70	GO:0000304: response to singlet oxygen	3.21E-03
71	GO:0007186: G-protein coupled receptor signaling pathway	3.21E-03
72	GO:0010038: response to metal ion	3.21E-03
73	GO:0006414: translational elongation	4.55E-03
74	GO:0030154: cell differentiation	4.64E-03
75	GO:0006165: nucleoside diphosphate phosphorylation	4.75E-03
76	GO:0006228: UTP biosynthetic process	4.75E-03
77	GO:0010304: PSII associated light-harvesting complex II catabolic process	4.75E-03
78	GO:0051205: protein insertion into membrane	4.75E-03
79	GO:0045037: protein import into chloroplast stroma	4.75E-03
80	GO:0019375: galactolipid biosynthetic process	4.75E-03
81	GO:0006183: GTP biosynthetic process	4.75E-03
82	GO:0006241: CTP biosynthetic process	4.75E-03
83	GO:0000373: Group II intron splicing	4.75E-03
84	GO:0015979: photosynthesis	5.15E-03
85	GO:0035196: production of miRNAs involved in gene silencing by miRNA	5.24E-03
86	GO:0010267: production of ta-siRNAs involved in RNA interference	5.24E-03
87	GO:0060416: response to growth hormone	6.47E-03
88	GO:0009772: photosynthetic electron transport in photosystem II	6.47E-03
89	GO:0009308: amine metabolic process	6.47E-03
90	GO:0006200: obsolete ATP catabolic process	6.96E-03
91	GO:0009695: jasmonic acid biosynthetic process	7.38E-03
92	GO:0000105: histidine biosynthetic process	8.38E-03
93	GO:0030003: cellular cation homeostasis	1.05E-02
94	GO:0009704: de-etiolation	1.05E-02
95	GO:0009411: response to UV	1.05E-02
96	GO:0010583: response to cyclopentenone	1.05E-02
97	GO:0015693: magnesium ion transport	1.27E-02
98	GO:0030245: cellulose catabolic process	1.27E-02
99	GO:0051604: protein maturation	1.27E-02
100	GO:0009585: red, far-red light phototransduction	1.51E-02
101	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.51E-02
102	GO:0009407: toxin catabolic process	1.77E-02
103	GO:0006354: DNA-templated transcription, elongation	2.04E-02
104	GO:0048527: lateral root development	2.04E-02
105	GO:0009697: salicylic acid biosynthetic process	2.04E-02
106	GO:0009567: double fertilization forming a zygote and endosperm	2.04E-02
107	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.32E-02
108	GO:0006974: cellular response to DNA damage stimulus	2.32E-02
109	GO:0009793: embryo development ending in seed dormancy	2.41E-02
110	GO:0016042: lipid catabolic process	2.62E-02
111	GO:0015996: chlorophyll catabolic process	3.26E-02
112	GO:0005982: starch metabolic process	3.26E-02
113	GO:0008299: isoprenoid biosynthetic process	3.26E-02
114	GO:0042545: cell wall modification	3.59E-02
115	GO:0009965: leaf morphogenesis	3.76E-02
116	GO:0009657: plastid organization	3.94E-02
117	GO:0048825: cotyledon development	4.30E-02
118	GO:0006417: regulation of translation	4.30E-02
119	GO:0016036: cellular response to phosphate starvation	4.30E-02
120	GO:0006310: DNA recombination	4.30E-02
121	GO:0006352: DNA-templated transcription, initiation	4.67E-02
122	GO:0042742: defense response to bacterium	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0003879: ATP phosphoribosyltransferase activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0051743: red chlorophyll catabolite reductase activity	0.00E+00
4	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
5	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
6	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
7	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
8	GO:0005048: signal sequence binding	0.00E+00
9	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
10	GO:0004853: uroporphyrinogen decarboxylase activity	2.25E-05
11	GO:0008565: protein transporter activity	7.55E-05
12	GO:0004765: shikimate kinase activity	1.67E-04
13	GO:0004525: ribonuclease III activity	6.49E-04
14	GO:0070402: NADPH binding	8.42E-04
15	GO:0008146: sulfotransferase activity	8.42E-04
16	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	8.42E-04
17	GO:0004823: leucine-tRNA ligase activity	8.42E-04
18	GO:0045174: glutathione dehydrogenase (ascorbate) activity	8.42E-04
19	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	8.42E-04
20	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.45E-03
21	GO:0004462: lactoylglutathione lyase activity	1.92E-03
22	GO:0016630: protochlorophyllide reductase activity	1.92E-03
23	GO:0003746: translation elongation factor activity	2.98E-03
24	GO:0003959: NADPH dehydrogenase activity	3.21E-03
25	GO:0016831: carboxy-lyase activity	4.04E-03
26	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	4.75E-03
27	GO:0070569: uridylyltransferase activity	4.75E-03
28	GO:0004659: prenyltransferase activity	4.75E-03
29	GO:0004550: nucleoside diphosphate kinase activity	4.75E-03
30	GO:0003913: DNA photolyase activity	4.75E-03
31	GO:0005525: GTP binding	5.10E-03
32	GO:0016987: sigma factor activity	6.47E-03
33	GO:0016817: hydrolase activity, acting on acid anhydrides	8.38E-03
34	GO:0008810: cellulase activity	1.05E-02
35	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.05E-02
36	GO:0003924: GTPase activity	1.17E-02
37	GO:0008312: 7S RNA binding	1.27E-02
38	GO:0043022: ribosome binding	1.27E-02
39	GO:0004575: sucrose alpha-glucosidase activity	1.27E-02
40	GO:0016887: ATPase activity	1.32E-02
41	GO:0008236: serine-type peptidase activity	1.50E-02
42	GO:0015095: magnesium ion transmembrane transporter activity	1.77E-02
43	GO:0046873: metal ion transmembrane transporter activity	1.77E-02
44	GO:0000049: tRNA binding	1.77E-02
45	GO:0051082: unfolded protein binding	2.42E-02
46	GO:0003723: RNA binding	2.54E-02
47	GO:0048038: quinone binding	3.26E-02
48	GO:0005216: ion channel activity	3.59E-02
49	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.94E-02
50	GO:0000287: magnesium ion binding	3.94E-02
51	GO:0016829: lyase activity	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0055035: plastid thylakoid membrane	0.00E+00
2	GO:0031361: integral component of thylakoid membrane	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0009507: chloroplast	5.79E-25
5	GO:0009570: chloroplast stroma	1.49E-12
6	GO:0009535: chloroplast thylakoid membrane	2.26E-11
7	GO:0009941: chloroplast envelope	1.87E-08
8	GO:0009579: thylakoid	9.41E-06
9	GO:0009534: chloroplast thylakoid	1.09E-05
10	GO:0031977: thylakoid lumen	4.01E-05
11	GO:0009295: nucleoid	1.50E-04
12	GO:0009543: chloroplast thylakoid lumen	2.53E-04
13	GO:0019031: viral envelope	8.42E-04
14	GO:0005960: glycine cleavage complex	8.42E-04
15	GO:0080085: signal recognition particle, chloroplast targeting	8.42E-04
16	GO:0009528: plastid inner membrane	8.42E-04
17	GO:0009527: plastid outer membrane	8.42E-04
18	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	8.42E-04
19	GO:0009526: plastid envelope	8.42E-04
20	GO:0009532: plastid stroma	8.81E-04
21	GO:0009508: plastid chromosome	6.47E-03
22	GO:0009840: chloroplastic endopeptidase Clp complex	6.47E-03
23	GO:0019013: viral nucleocapsid	6.62E-03
24	GO:0019898: extrinsic component of membrane	8.38E-03
25	GO:0031225: anchored component of membrane	8.38E-03
26	GO:0009706: chloroplast inner membrane	9.02E-03
27	GO:0009654: photosystem II oxygen evolving complex	1.05E-02
28	GO:0048500: signal recognition particle	1.05E-02
29	GO:0009523: photosystem II	1.28E-02
30	GO:0010319: stromule	1.74E-02
31	GO:0042651: thylakoid membrane	2.93E-02