co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G021270

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031508: pericentric heterochromatin assembly	0.00E+00
2	GO:0006268: DNA unwinding involved in DNA replication	0.00E+00
3	GO:0032465: regulation of cytokinesis	0.00E+00
4	GO:0010425: DNA methylation on cytosine within a CNG sequence	0.00E+00
5	GO:0032776: DNA methylation on cytosine	0.00E+00
6	GO:0043137: DNA replication, removal of RNA primer	0.00E+00
7	GO:0006233: dTDP biosynthetic process	0.00E+00
8	GO:0006260: DNA replication	2.92E-09
9	GO:0007049: cell cycle	1.11E-07
10	GO:0006342: chromatin silencing	2.82E-07
11	GO:0010389: regulation of G2/M transition of mitotic cell cycle	2.04E-06
12	GO:0006275: regulation of DNA replication	2.08E-06
13	GO:0045814: negative regulation of gene expression, epigenetic	1.02E-05
14	GO:0010069: zygote asymmetric cytokinesis in embryo sac	1.02E-05
15	GO:0043987: histone H3-S10 phosphorylation	1.02E-05
16	GO:0051567: histone H3-K9 methylation	1.23E-05
17	GO:0006306: DNA methylation	1.69E-05
18	GO:0016572: histone phosphorylation	1.94E-05
19	GO:0051301: cell division	2.99E-05
20	GO:0007018: microtubule-based movement	3.89E-05
21	GO:0090116: C-5 methylation of cytosine	8.13E-05
22	GO:0009909: regulation of flower development	1.51E-04
23	GO:0000911: cytokinesis by cell plate formation	1.58E-04
24	GO:0006084: acetyl-CoA metabolic process	3.36E-04
25	GO:0010583: response to cyclopentenone	3.36E-04
26	GO:0008283: cell proliferation	3.40E-04
27	GO:0006281: DNA repair	5.16E-04
28	GO:0031507: heterochromatin assembly	5.42E-04
29	GO:0007059: chromosome segregation	5.42E-04
30	GO:0010026: trichome differentiation	5.42E-04
31	GO:0042276: error-prone translesion synthesis	5.42E-04
32	GO:1990426: mitotic recombination-dependent replication fork processing	5.42E-04
33	GO:0009652: thigmotropism	5.42E-04
34	GO:0006270: DNA replication initiation	7.30E-04
35	GO:0006259: DNA metabolic process	9.53E-04
36	GO:0048453: sepal formation	9.53E-04
37	GO:0051726: regulation of cell cycle	1.12E-03
38	GO:0048451: petal formation	1.16E-03
39	GO:0051225: spindle assembly	1.16E-03
40	GO:0009956: radial pattern formation	1.26E-03
41	GO:0009186: deoxyribonucleoside diphosphate metabolic process	1.26E-03
42	GO:0009755: hormone-mediated signaling pathway	1.26E-03
43	GO:0032508: DNA duplex unwinding	1.38E-03
44	GO:0009294: DNA mediated transformation	1.89E-03
45	GO:0022904: respiratory electron transport chain	2.10E-03
46	GO:0009957: epidermal cell fate specification	2.10E-03
47	GO:0000724: double-strand break repair via homologous recombination	2.45E-03
48	GO:0009966: regulation of signal transduction	2.77E-03
49	GO:0006310: DNA recombination	2.77E-03
50	GO:0008356: asymmetric cell division	3.06E-03
51	GO:0032875: regulation of DNA endoreduplication	4.19E-03
52	GO:0006265: DNA topological change	4.19E-03
53	GO:0010082: regulation of root meristem growth	4.19E-03
54	GO:0006396: RNA processing	5.04E-03
55	GO:0007267: cell-cell signaling	5.40E-03
56	GO:0010087: phloem or xylem histogenesis	5.40E-03
57	GO:0009933: meristem structural organization	5.76E-03
58	GO:0000226: microtubule cytoskeleton organization	6.28E-03
59	GO:0009934: regulation of meristem structural organization	6.74E-03
60	GO:0006325: chromatin organization	6.74E-03
61	GO:0055072: iron ion homeostasis	6.74E-03
62	GO:0048366: leaf development	8.00E-03
63	GO:0048449: floral organ formation	8.18E-03
64	GO:0010074: maintenance of meristem identity	8.18E-03
65	GO:0090305: nucleic acid phosphodiester bond hydrolysis	9.72E-03
66	GO:0006302: double-strand break repair	9.72E-03
67	GO:0061025: membrane fusion	9.72E-03
68	GO:0009451: RNA modification	1.14E-02
69	GO:0042127: regulation of cell proliferation	1.14E-02
70	GO:0012501: programmed cell death	1.31E-02
71	GO:0009616: virus induced gene silencing	1.31E-02
72	GO:0009958: positive gravitropism	1.31E-02
73	GO:0016570: histone modification	1.31E-02
74	GO:0010048: vernalization response	1.31E-02
75	GO:0006284: base-excision repair	1.31E-02
76	GO:0019915: lipid storage	1.49E-02
77	GO:0006974: cellular response to DNA damage stimulus	1.49E-02
78	GO:0001522: pseudouridine synthesis	1.68E-02
79	GO:0016571: histone methylation	1.68E-02
80	GO:0009165: nucleotide biosynthetic process	1.68E-02
81	GO:0010332: response to gamma radiation	1.68E-02
82	GO:0010228: vegetative to reproductive phase transition of meristem	1.72E-02
83	GO:0006406: mRNA export from nucleus	1.88E-02
84	GO:0006289: nucleotide-excision repair	1.88E-02
85	GO:0048316: seed development	1.88E-02
86	GO:0010162: seed dormancy process	2.08E-02
87	GO:0006446: regulation of translational initiation	2.08E-02
88	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.08E-02
89	GO:0001731: formation of translation preinitiation complex	2.30E-02
90	GO:0007062: sister chromatid cohesion	2.30E-02
91	GO:0050826: response to freezing	2.30E-02
92	GO:0009555: pollen development	2.32E-02
93	GO:0016126: sterol biosynthetic process	2.52E-02
94	GO:0010267: production of ta-siRNAs involved in RNA interference	2.75E-02
95	GO:0035196: production of miRNAs involved in gene silencing by miRNA	2.75E-02
96	GO:0044267: cellular protein metabolic process	2.75E-02
97	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.99E-02
98	GO:0010182: sugar mediated signaling pathway	3.23E-02
99	GO:0051258: protein polymerization	3.48E-02
100	GO:0000278: mitotic cell cycle	3.48E-02
101	GO:0009553: embryo sac development	3.48E-02
102	GO:0007017: microtubule-based process	4.01E-02
103	GO:0009845: seed germination	4.01E-02
104	GO:0031047: gene silencing by RNA	4.28E-02
105	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	4.28E-02

Rank	GO Term	Adjusted P value
1	GO:0004798: thymidylate kinase activity	0.00E+00
2	GO:0008409: 5'-3' exonuclease activity	0.00E+00
3	GO:0008017: microtubule binding	7.13E-07
4	GO:0035175: histone kinase activity (H3-S10 specific)	1.02E-05
5	GO:0004748: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	3.63E-05
6	GO:0003777: microtubule motor activity	3.89E-05
7	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	8.13E-05
8	GO:0017108: 5'-flap endonuclease activity	5.42E-04
9	GO:0000150: recombinase activity	5.42E-04
10	GO:0030337: DNA polymerase processivity factor activity	5.42E-04
11	GO:0008327: methyl-CpG binding	5.42E-04
12	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	5.42E-04
13	GO:0010428: methyl-CpNpG binding	5.42E-04
14	GO:0010429: methyl-CpNpN binding	5.42E-04
15	GO:0003678: DNA helicase activity	9.53E-04
16	GO:0003684: damaged DNA binding	9.53E-04
17	GO:0008569: ATP-dependent microtubule motor activity, minus-end-directed	1.26E-03
18	GO:0070628: proteasome binding	2.10E-03
19	GO:0010385: double-stranded methylated DNA binding	2.10E-03
20	GO:0003677: DNA binding	2.11E-03
21	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	3.06E-03
22	GO:0008536: Ran GTPase binding	5.40E-03
23	GO:0005524: ATP binding	6.83E-03
24	GO:0043022: ribosome binding	8.18E-03
25	GO:0008094: DNA-dependent ATPase activity	8.18E-03
26	GO:0043130: ubiquitin binding	8.18E-03
27	GO:0009982: pseudouridine synthase activity	1.14E-02
28	GO:0005484: SNAP receptor activity	1.31E-02
29	GO:0046914: transition metal ion binding	1.31E-02
30	GO:0004518: nuclease activity	1.31E-02
31	GO:0003697: single-stranded DNA binding	1.49E-02
32	GO:0003690: double-stranded DNA binding	1.49E-02
33	GO:0004519: endonuclease activity	1.68E-02
34	GO:0004527: exonuclease activity	2.08E-02
35	GO:0016651: oxidoreductase activity, acting on NAD(P)H	2.30E-02
36	GO:0019901: protein kinase binding	2.30E-02
37	GO:0017111: nucleoside-triphosphatase activity	2.81E-02
38	GO:0005200: structural constituent of cytoskeleton	2.99E-02
39	GO:0008565: protein transporter activity	3.48E-02
40	GO:0042393: histone binding	3.74E-02

Rank	GO Term	Adjusted P value
1	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	0.00E+00
2	GO:0033186: CAF-1 complex	0.00E+00
3	GO:0005874: microtubule	3.00E-06
4	GO:0005871: kinesin complex	3.41E-05
5	GO:0005971: ribonucleoside-diphosphate reductase complex	3.63E-05
6	GO:0005875: microtubule associated complex	1.06E-04
7	GO:0005819: spindle	3.80E-04
8	GO:0000347: THO complex	5.42E-04
9	GO:0010369: chromocenter	5.42E-04
10	GO:0043626: PCNA complex	5.42E-04
11	GO:0042555: MCM complex	6.03E-04
12	GO:0005815: microtubule organizing center	2.10E-03
13	GO:0000775: chromosome, centromeric region	2.10E-03
14	GO:0005634: nucleus	2.15E-03
15	GO:0031966: mitochondrial membrane	2.77E-03
16	GO:0005654: nucleoplasm	2.77E-03
17	GO:0005876: spindle microtubule	3.06E-03
18	GO:0005730: nucleolus	3.80E-03
19	GO:0009574: preprophase band	5.40E-03
20	GO:0010005: cortical microtubule, transverse to long axis	5.40E-03
21	GO:0012505: endomembrane system	6.74E-03
22	GO:0009524: phragmoplast	7.40E-03
23	GO:0016272: prefoldin complex	8.18E-03
24	GO:0005744: mitochondrial inner membrane presequence translocase complex	8.18E-03
25	GO:0016604: nuclear body	8.18E-03
26	GO:0045271: respiratory chain complex I	1.45E-02
27	GO:0005743: mitochondrial inner membrane	1.91E-02
28	GO:0005643: nuclear pore	2.08E-02
29	GO:0033290: eukaryotic 48S preinitiation complex	2.30E-02
30	GO:0016282: eukaryotic 43S preinitiation complex	2.30E-02
31	GO:0005852: eukaryotic translation initiation factor 3 complex	2.52E-02
32	GO:0009504: cell plate	2.52E-02
33	GO:0019013: viral nucleocapsid	3.23E-02
34	GO:0043234: protein complex	3.74E-02
35	GO:0005635: nuclear envelope	4.01E-02