co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G021069

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032776: DNA methylation on cytosine	0.00E+00
2	GO:0031508: pericentric heterochromatin assembly	0.00E+00
3	GO:0006268: DNA unwinding involved in DNA replication	0.00E+00
4	GO:0007049: cell cycle	1.96E-09
5	GO:0006260: DNA replication	3.08E-09
6	GO:0032508: DNA duplex unwinding	4.25E-09
7	GO:0006270: DNA replication initiation	1.55E-07
8	GO:0016572: histone phosphorylation	1.60E-07
9	GO:0043987: histone H3-S10 phosphorylation	2.82E-07
10	GO:0051301: cell division	1.31E-06
11	GO:0006275: regulation of DNA replication	9.39E-06
12	GO:0051726: regulation of cell cycle	1.86E-05
13	GO:0042276: error-prone translesion synthesis	7.09E-05
14	GO:1990426: mitotic recombination-dependent replication fork processing	7.09E-05
15	GO:0010389: regulation of G2/M transition of mitotic cell cycle	7.09E-05
16	GO:0010425: DNA methylation on cytosine within a CNG sequence	7.09E-05
17	GO:0009294: DNA mediated transformation	1.03E-04
18	GO:0009909: regulation of flower development	1.55E-04
19	GO:0009966: regulation of signal transduction	1.62E-04
20	GO:0010069: zygote asymmetric cytokinesis in embryo sac	1.80E-04
21	GO:0009186: deoxyribonucleoside diphosphate metabolic process	1.80E-04
22	GO:0009755: hormone-mediated signaling pathway	1.80E-04
23	GO:0045814: negative regulation of gene expression, epigenetic	1.80E-04
24	GO:0006333: chromatin assembly or disassembly	3.18E-04
25	GO:0032147: activation of protein kinase activity	4.75E-04
26	GO:0090116: C-5 methylation of cytosine	4.75E-04
27	GO:0010082: regulation of root meristem growth	6.50E-04
28	GO:0060236: regulation of mitotic spindle organization	6.50E-04
29	GO:0051567: histone H3-K9 methylation	7.28E-04
30	GO:0006306: DNA methylation	8.29E-04
31	GO:0006084: acetyl-CoA metabolic process	1.05E-03
32	GO:0006325: chromatin organization	1.05E-03
33	GO:0009934: regulation of meristem structural organization	1.05E-03
34	GO:0010228: vegetative to reproductive phase transition of meristem	1.11E-03
35	GO:0048449: floral organ formation	1.27E-03
36	GO:0010074: maintenance of meristem identity	1.27E-03
37	GO:0006302: double-strand break repair	1.50E-03
38	GO:0006342: chromatin silencing	1.50E-03
39	GO:0042127: regulation of cell proliferation	1.74E-03
40	GO:0006259: DNA metabolic process	1.99E-03
41	GO:0016570: histone modification	1.99E-03
42	GO:0010048: vernalization response	1.99E-03
43	GO:0012501: programmed cell death	1.99E-03
44	GO:0019915: lipid storage	2.24E-03
45	GO:0016571: histone methylation	2.50E-03
46	GO:0009165: nucleotide biosynthetic process	2.50E-03
47	GO:0010332: response to gamma radiation	2.50E-03
48	GO:0006406: mRNA export from nucleus	2.78E-03
49	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.08E-03
50	GO:0010162: seed dormancy process	3.08E-03
51	GO:0050826: response to freezing	3.40E-03
52	GO:0000724: double-strand break repair via homologous recombination	3.72E-03
53	GO:0006281: DNA repair	3.79E-03
54	GO:0010182: sugar mediated signaling pathway	4.75E-03
55	GO:0009845: seed germination	5.84E-03
56	GO:0009933: meristem structural organization	6.63E-03
57	GO:0016579: protein deubiquitination	7.87E-03
58	GO:0009793: embryo development ending in seed dormancy	8.36E-03
59	GO:0009790: embryo development	8.74E-03
60	GO:0000911: cytokinesis by cell plate formation	1.01E-02
61	GO:0009640: photomorphogenesis	1.10E-02
62	GO:0008283: cell proliferation	1.35E-02
63	GO:0007018: microtubule-based movement	1.46E-02
64	GO:0048364: root development	1.57E-02
65	GO:0007275: multicellular organism development	1.62E-02
66	GO:0045893: positive regulation of transcription, DNA-templated	1.91E-02
67	GO:0007264: small GTPase mediated signal transduction	3.31E-02
68	GO:0016567: protein ubiquitination	3.38E-02

Rank	GO Term	Adjusted P value
1	GO:0003678: DNA helicase activity	1.71E-09
2	GO:0035175: histone kinase activity (H3-S10 specific)	2.82E-07
3	GO:0030337: DNA polymerase processivity factor activity	7.09E-05
4	GO:0008327: methyl-CpG binding	7.09E-05
5	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	7.09E-05
6	GO:0010428: methyl-CpNpG binding	7.09E-05
7	GO:0010429: methyl-CpNpN binding	7.09E-05
8	GO:0000150: recombinase activity	7.09E-05
9	GO:0003688: DNA replication origin binding	1.80E-04
10	GO:0010385: double-stranded methylated DNA binding	3.18E-04
11	GO:0004748: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	3.18E-04
12	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	4.75E-04
13	GO:0003677: DNA binding	6.61E-04
14	GO:0008094: DNA-dependent ATPase activity	1.27E-03
15	GO:0005524: ATP binding	1.76E-03
16	GO:0008017: microtubule binding	1.94E-03
17	GO:0046914: transition metal ion binding	1.99E-03
18	GO:0003684: damaged DNA binding	1.99E-03
19	GO:0003697: single-stranded DNA binding	2.24E-03
20	GO:0003690: double-stranded DNA binding	2.24E-03
21	GO:0000166: nucleotide binding	2.24E-03
22	GO:0003682: chromatin binding	2.34E-03
23	GO:0019901: protein kinase binding	3.40E-03
24	GO:0042393: histone binding	5.46E-03
25	GO:0017111: nucleoside-triphosphatase activity	6.83E-03
26	GO:0003777: microtubule motor activity	1.46E-02
27	GO:0016881: acid-amino acid ligase activity	1.68E-02
28	GO:0004674: protein serine/threonine kinase activity	2.15E-02
29	GO:0016772: transferase activity, transferring phosphorus-containing groups	4.29E-02

Rank	GO Term	Adjusted P value
1	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	0.00E+00
2	GO:0042555: MCM complex	5.56E-10
3	GO:0005819: spindle	4.83E-06
4	GO:0005634: nucleus	5.28E-05
5	GO:0010369: chromocenter	7.09E-05
6	GO:0043626: PCNA complex	7.09E-05
7	GO:0000347: THO complex	7.09E-05
8	GO:0005971: ribonucleoside-diphosphate reductase complex	3.18E-04
9	GO:0005874: microtubule	2.91E-03
10	GO:0005635: nuclear envelope	5.84E-03
11	GO:0005875: microtubule associated complex	8.74E-03
12	GO:0005871: kinesin complex	1.41E-02
13	GO:0005730: nucleolus	2.45E-02