co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G019901

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901259: chloroplast rRNA processing	0.00E+00
2	GO:0010028: xanthophyll cycle	0.00E+00
3	GO:0090342: regulation of cell aging	0.00E+00
4	GO:0032544: plastid translation	0.00E+00
5	GO:0042372: phylloquinone biosynthetic process	0.00E+00
6	GO:0071486: cellular response to high light intensity	0.00E+00
7	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
8	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
9	GO:0043043: peptide biosynthetic process	0.00E+00
10	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
11	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
12	GO:0042821: pyridoxal biosynthetic process	0.00E+00
13	GO:0009234: menaquinone biosynthetic process	0.00E+00
14	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
15	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.04E-20
16	GO:0010027: thylakoid membrane organization	5.10E-20
17	GO:0010207: photosystem II assembly	7.22E-11
18	GO:0006098: pentose-phosphate shunt	1.28E-10
19	GO:0015995: chlorophyll biosynthetic process	2.42E-10
20	GO:0006364: rRNA processing	2.50E-10
21	GO:0016226: iron-sulfur cluster assembly	5.32E-10
22	GO:0006412: translation	1.04E-09
23	GO:0045036: protein targeting to chloroplast	7.37E-09
24	GO:0006636: unsaturated fatty acid biosynthetic process	2.34E-08
25	GO:0009902: chloroplast relocation	4.16E-08
26	GO:0006546: glycine catabolic process	2.29E-07
27	GO:0006766: vitamin metabolic process	5.12E-07
28	GO:0009108: coenzyme biosynthetic process	5.12E-07
29	GO:0009106: lipoate metabolic process	5.12E-07
30	GO:0006655: phosphatidylglycerol biosynthetic process	6.32E-07
31	GO:0042793: transcription from plastid promoter	6.32E-07
32	GO:0009658: chloroplast organization	6.55E-07
33	GO:0009073: aromatic amino acid family biosynthetic process	2.37E-06
34	GO:0045038: protein import into chloroplast thylakoid membrane	2.92E-06
35	GO:0016117: carotenoid biosynthetic process	3.02E-06
36	GO:0019748: secondary metabolic process	8.16E-06
37	GO:0000096: sulfur amino acid metabolic process	8.16E-06
38	GO:0043085: positive regulation of catalytic activity	3.92E-05
39	GO:0030154: cell differentiation	5.20E-05
40	GO:0006399: tRNA metabolic process	5.54E-05
41	GO:0010103: stomatal complex morphogenesis	8.51E-05
42	GO:0009773: photosynthetic electron transport in photosystem I	1.07E-04
43	GO:0006733: oxidoreduction coenzyme metabolic process	1.10E-04
44	GO:0006418: tRNA aminoacylation for protein translation	1.24E-04
45	GO:0009695: jasmonic acid biosynthetic process	1.31E-04
46	GO:0006354: DNA-templated transcription, elongation	1.74E-04
47	GO:0009117: nucleotide metabolic process	2.33E-04
48	GO:0045893: positive regulation of transcription, DNA-templated	6.42E-04
49	GO:0019684: photosynthesis, light reaction	7.01E-04
50	GO:0000023: maltose metabolic process	8.64E-04
51	GO:0034660: ncRNA metabolic process	8.81E-04
52	GO:0006573: valine metabolic process	1.04E-03
53	GO:0006433: prolyl-tRNA aminoacylation	1.04E-03
54	GO:0032543: mitochondrial translation	1.04E-03
55	GO:0009069: serine family amino acid metabolic process	1.04E-03
56	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	1.04E-03
57	GO:0009443: pyridoxal 5'-phosphate salvage	1.04E-03
58	GO:0006429: leucyl-tRNA aminoacylation	1.04E-03
59	GO:0008361: regulation of cell size	1.04E-03
60	GO:0006434: seryl-tRNA aminoacylation	1.04E-03
61	GO:0016050: vesicle organization	1.04E-03
62	GO:0008652: cellular amino acid biosynthetic process	1.55E-03
63	GO:0009072: aromatic amino acid family metabolic process	1.56E-03
64	GO:0009407: toxin catabolic process	1.94E-03
65	GO:0009965: leaf morphogenesis	2.13E-03
66	GO:0019464: glycine decarboxylation via glycine cleavage system	2.33E-03
67	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.33E-03
68	GO:0006432: phenylalanyl-tRNA aminoacylation	2.33E-03
69	GO:0010109: regulation of photosynthesis	2.33E-03
70	GO:0010236: plastoquinone biosynthetic process	2.33E-03
71	GO:0009688: abscisic acid biosynthetic process	2.33E-03
72	GO:0048653: anther development	2.33E-03
73	GO:0044272: sulfur compound biosynthetic process	2.33E-03
74	GO:0016556: mRNA modification	2.38E-03
75	GO:0006779: porphyrin-containing compound biosynthetic process	2.87E-03
76	GO:0019344: cysteine biosynthetic process	3.30E-03
77	GO:0019761: glucosinolate biosynthetic process	3.65E-03
78	GO:0034599: cellular response to oxidative stress	3.95E-03
79	GO:0007186: G-protein coupled receptor signaling pathway	3.95E-03
80	GO:0010731: protein glutathionylation	3.95E-03
81	GO:0015996: chlorophyll catabolic process	4.73E-03
82	GO:0019252: starch biosynthetic process	4.89E-03
83	GO:0048481: plant ovule development	5.22E-03
84	GO:0042545: cell wall modification	5.44E-03
85	GO:0010304: PSII associated light-harvesting complex II catabolic process	5.83E-03
86	GO:0051205: protein insertion into membrane	5.83E-03
87	GO:0045037: protein import into chloroplast stroma	5.83E-03
88	GO:0007389: pattern specification process	5.83E-03
89	GO:0071704: organic substance metabolic process	5.83E-03
90	GO:0019216: regulation of lipid metabolic process	5.83E-03
91	GO:0006631: fatty acid metabolic process	6.23E-03
92	GO:0006414: translational elongation	6.64E-03
93	GO:0009813: flavonoid biosynthetic process	7.96E-03
94	GO:0015994: chlorophyll metabolic process	7.96E-03
95	GO:0006569: tryptophan catabolic process	7.96E-03
96	GO:0060416: response to growth hormone	7.96E-03
97	GO:0009772: photosynthetic electron transport in photosystem II	7.96E-03
98	GO:0042742: defense response to bacterium	8.53E-03
99	GO:0010228: vegetative to reproductive phase transition of meristem	8.90E-03
100	GO:0035304: regulation of protein dephosphorylation	8.93E-03
101	GO:0046777: protein autophosphorylation	8.93E-03
102	GO:0000105: histidine biosynthetic process	1.03E-02
103	GO:0009913: epidermal cell differentiation	1.03E-02
104	GO:0009306: protein secretion	1.03E-02
105	GO:0048229: gametophyte development	1.03E-02
106	GO:0007005: mitochondrion organization	1.03E-02
107	GO:0009793: embryo development ending in seed dormancy	1.16E-02
108	GO:0009704: de-etiolation	1.29E-02
109	GO:0009411: response to UV	1.29E-02
110	GO:0009814: defense response, incompatible interaction	1.29E-02
111	GO:0010583: response to cyclopentenone	1.29E-02
112	GO:0006801: superoxide metabolic process	1.29E-02
113	GO:0009926: auxin polar transport	1.29E-02
114	GO:0008295: spermidine biosynthetic process	1.57E-02
115	GO:0043039: tRNA aminoacylation	1.57E-02
116	GO:0009735: response to cytokinin	1.73E-02
117	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.87E-02
118	GO:0040007: growth	1.87E-02
119	GO:0010015: root morphogenesis	1.87E-02
120	GO:0009832: plant-type cell wall biogenesis	2.18E-02
121	GO:0009684: indoleacetic acid biosynthetic process	2.18E-02
122	GO:0048527: lateral root development	2.52E-02
123	GO:0009697: salicylic acid biosynthetic process	2.52E-02
124	GO:0009567: double fertilization forming a zygote and endosperm	2.52E-02
125	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.87E-02
126	GO:0006974: cellular response to DNA damage stimulus	2.87E-02
127	GO:0015979: photosynthesis	3.23E-02
128	GO:0048316: seed development	3.63E-02
129	GO:0008033: tRNA processing	3.63E-02
130	GO:0031408: oxylipin biosynthetic process	3.63E-02
131	GO:0051607: defense response to virus	3.63E-02
132	GO:0006184: obsolete GTP catabolic process	3.95E-02
133	GO:0010075: regulation of meristem growth	4.03E-02
134	GO:0009657: plastid organization	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
2	GO:0004399: histidinol dehydrogenase activity	0.00E+00
3	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
4	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
5	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
6	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
7	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
8	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
9	GO:0005048: signal sequence binding	0.00E+00
10	GO:0005504: fatty acid binding	0.00E+00
11	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
12	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
13	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
14	GO:0003735: structural constituent of ribosome	3.38E-08
15	GO:0004812: aminoacyl-tRNA ligase activity	1.63E-04
16	GO:0004765: shikimate kinase activity	2.33E-04
17	GO:0034256: chlorophyll(ide) b reductase activity	1.04E-03
18	GO:0004827: proline-tRNA ligase activity	1.04E-03
19	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.04E-03
20	GO:0004823: leucine-tRNA ligase activity	1.04E-03
21	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.04E-03
22	GO:0004828: serine-tRNA ligase activity	1.04E-03
23	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.04E-03
24	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.04E-03
25	GO:0070402: NADPH binding	1.04E-03
26	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.94E-03
27	GO:0000049: tRNA binding	1.94E-03
28	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	2.33E-03
29	GO:0045430: chalcone isomerase activity	2.33E-03
30	GO:0051920: peroxiredoxin activity	2.33E-03
31	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	2.33E-03
32	GO:0004826: phenylalanine-tRNA ligase activity	2.33E-03
33	GO:0016872: intramolecular lyase activity	3.95E-03
34	GO:0003746: translation elongation factor activity	4.40E-03
35	GO:0016209: antioxidant activity	5.83E-03
36	GO:0003913: DNA photolyase activity	5.83E-03
37	GO:0070569: uridylyltransferase activity	5.83E-03
38	GO:0004659: prenyltransferase activity	5.83E-03
39	GO:0016868: intramolecular transferase activity, phosphotransferases	7.96E-03
40	GO:0016987: sigma factor activity	7.96E-03
41	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	7.96E-03
42	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.29E-02
43	GO:0004784: superoxide dismutase activity	1.57E-02
44	GO:0008312: 7S RNA binding	1.57E-02
45	GO:0043022: ribosome binding	1.57E-02
46	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.18E-02
47	GO:0008081: phosphoric diester hydrolase activity	4.03E-02
48	GO:0005216: ion channel activity	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0031361: integral component of thylakoid membrane	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	7.17E-44
4	GO:0009570: chloroplast stroma	2.00E-34
5	GO:0009941: chloroplast envelope	6.34E-20
6	GO:0009535: chloroplast thylakoid membrane	2.85E-12
7	GO:0005840: ribosome	2.98E-11
8	GO:0009579: thylakoid	8.48E-08
9	GO:0009534: chloroplast thylakoid	1.88E-06
10	GO:0009295: nucleoid	9.69E-06
11	GO:0030529: intracellular ribonucleoprotein complex	1.41E-05
12	GO:0009543: chloroplast thylakoid lumen	2.08E-05
13	GO:0005622: intracellular	2.28E-04
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.18E-04
15	GO:0080085: signal recognition particle, chloroplast targeting	1.04E-03
16	GO:0009528: plastid inner membrane	1.04E-03
17	GO:0000311: plastid large ribosomal subunit	1.04E-03
18	GO:0009527: plastid outer membrane	1.04E-03
19	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.04E-03
20	GO:0005960: glycine cleavage complex	1.04E-03
21	GO:0044445: cytosolic part	1.04E-03
22	GO:0009532: plastid stroma	1.20E-03
23	GO:0055028: cortical microtubule	3.95E-03
24	GO:0031977: thylakoid lumen	4.40E-03
25	GO:0009840: chloroplastic endopeptidase Clp complex	7.96E-03
26	GO:0009508: plastid chromosome	7.96E-03
27	GO:0019013: viral nucleocapsid	8.93E-03
28	GO:0048500: signal recognition particle	1.29E-02
29	GO:0015934: large ribosomal subunit	2.35E-02
30	GO:0010319: stromule	2.35E-02
31	GO:0009536: plastid	3.32E-02