co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G019437

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
2	GO:1901259: chloroplast rRNA processing	0.00E+00
3	GO:0032544: plastid translation	0.00E+00
4	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
5	GO:0071486: cellular response to high light intensity	0.00E+00
6	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
7	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
8	GO:0043043: peptide biosynthetic process	0.00E+00
9	GO:0043686: co-translational protein modification	0.00E+00
10	GO:0042821: pyridoxal biosynthetic process	0.00E+00
11	GO:0090391: granum assembly	0.00E+00
12	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
13	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
14	GO:0043953: protein transport by the Tat complex	0.00E+00
15	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
16	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
17	GO:0032543: mitochondrial translation	0.00E+00
18	GO:0046506: sulfolipid biosynthetic process	0.00E+00
19	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	5.48E-25
20	GO:0010027: thylakoid membrane organization	5.83E-25
21	GO:0009658: chloroplast organization	2.44E-15
22	GO:0009902: chloroplast relocation	6.01E-13
23	GO:0010207: photosystem II assembly	7.96E-12
24	GO:0045036: protein targeting to chloroplast	1.75E-11
25	GO:0006655: phosphatidylglycerol biosynthetic process	4.25E-11
26	GO:0042793: transcription from plastid promoter	4.25E-11
27	GO:0006364: rRNA processing	1.17E-10
28	GO:0006412: translation	1.72E-09
29	GO:0015995: chlorophyll biosynthetic process	6.51E-09
30	GO:0016226: iron-sulfur cluster assembly	1.07E-08
31	GO:0035304: regulation of protein dephosphorylation	6.65E-08
32	GO:0006098: pentose-phosphate shunt	7.10E-08
33	GO:0045893: positive regulation of transcription, DNA-templated	9.49E-07
34	GO:0006779: porphyrin-containing compound biosynthetic process	1.37E-06
35	GO:0006733: oxidoreduction coenzyme metabolic process	2.08E-06
36	GO:0006418: tRNA aminoacylation for protein translation	6.43E-06
37	GO:0045038: protein import into chloroplast thylakoid membrane	9.41E-06
38	GO:0009117: nucleotide metabolic process	9.41E-06
39	GO:0019748: secondary metabolic process	2.56E-05
40	GO:0009773: photosynthetic electron transport in photosystem I	3.09E-05
41	GO:0006546: glycine catabolic process	3.93E-05
42	GO:0042372: phylloquinone biosynthetic process	7.48E-05
43	GO:1901671: positive regulation of superoxide dismutase activity	7.48E-05
44	GO:0006766: vitamin metabolic process	9.77E-05
45	GO:0009108: coenzyme biosynthetic process	9.77E-05
46	GO:0009106: lipoate metabolic process	9.77E-05
47	GO:0009735: response to cytokinin	1.51E-04
48	GO:0006399: tRNA metabolic process	1.58E-04
49	GO:0009073: aromatic amino acid family biosynthetic process	1.81E-04
50	GO:0030154: cell differentiation	1.88E-04
51	GO:0009247: glycolipid biosynthetic process	2.38E-04
52	GO:0010103: stomatal complex morphogenesis	2.97E-04
53	GO:0009407: toxin catabolic process	3.40E-04
54	GO:0009695: jasmonic acid biosynthetic process	4.40E-04
55	GO:0048481: plant ovule development	4.48E-04
56	GO:0006354: DNA-templated transcription, elongation	4.62E-04
57	GO:0019375: galactolipid biosynthetic process	4.87E-04
58	GO:0006782: protoporphyrinogen IX biosynthetic process	4.87E-04
59	GO:0045037: protein import into chloroplast stroma	4.87E-04
60	GO:0006353: DNA-templated transcription, termination	4.87E-04
61	GO:0000096: sulfur amino acid metabolic process	8.23E-04
62	GO:0006457: protein folding	1.08E-03
63	GO:0006636: unsaturated fatty acid biosynthetic process	1.20E-03
64	GO:0009793: embryo development ending in seed dormancy	1.37E-03
65	GO:0019344: cysteine biosynthetic process	1.45E-03
66	GO:0009069: serine family amino acid metabolic process	1.66E-03
67	GO:0071722: detoxification of arsenic-containing substance	1.66E-03
68	GO:0006430: lysyl-tRNA aminoacylation	1.66E-03
69	GO:0009443: pyridoxal 5'-phosphate salvage	1.66E-03
70	GO:0006429: leucyl-tRNA aminoacylation	1.66E-03
71	GO:0008361: regulation of cell size	1.66E-03
72	GO:0006434: seryl-tRNA aminoacylation	1.66E-03
73	GO:0016050: vesicle organization	1.66E-03
74	GO:0006788: heme oxidation	1.66E-03
75	GO:0006573: valine metabolic process	1.66E-03
76	GO:0006433: prolyl-tRNA aminoacylation	1.66E-03
77	GO:0006282: regulation of DNA repair	1.66E-03
78	GO:0019684: photosynthesis, light reaction	1.73E-03
79	GO:0009411: response to UV	1.76E-03
80	GO:0033014: tetrapyrrole biosynthetic process	1.76E-03
81	GO:0034660: ncRNA metabolic process	1.76E-03
82	GO:0006184: obsolete GTP catabolic process	2.36E-03
83	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.02E-03
84	GO:0006432: phenylalanyl-tRNA aminoacylation	3.75E-03
85	GO:0010236: plastoquinone biosynthetic process	3.75E-03
86	GO:0051555: flavonol biosynthetic process	3.75E-03
87	GO:0010253: UDP-rhamnose biosynthetic process	3.75E-03
88	GO:0010109: regulation of photosynthesis	3.75E-03
89	GO:0010024: phytochromobilin biosynthetic process	3.75E-03
90	GO:0010192: mucilage biosynthetic process	3.75E-03
91	GO:0048653: anther development	3.75E-03
92	GO:0010380: regulation of chlorophyll biosynthetic process	3.75E-03
93	GO:0009225: nucleotide-sugar metabolic process	3.75E-03
94	GO:0044272: sulfur compound biosynthetic process	3.75E-03
95	GO:0019464: glycine decarboxylation via glycine cleavage system	3.75E-03
96	GO:0042742: defense response to bacterium	4.26E-03
97	GO:0016556: mRNA modification	4.75E-03
98	GO:0010228: vegetative to reproductive phase transition of meristem	4.82E-03
99	GO:0009965: leaf morphogenesis	6.13E-03
100	GO:0030497: fatty acid elongation	6.35E-03
101	GO:0034599: cellular response to oxidative stress	6.35E-03
102	GO:0000304: response to singlet oxygen	6.35E-03
103	GO:0006450: regulation of translational fidelity	6.35E-03
104	GO:0007186: G-protein coupled receptor signaling pathway	6.35E-03
105	GO:0010731: protein glutathionylation	6.35E-03
106	GO:0045226: extracellular polysaccharide biosynthetic process	6.35E-03
107	GO:0016075: rRNA catabolic process	6.35E-03
108	GO:0016117: carotenoid biosynthetic process	7.99E-03
109	GO:0031408: oxylipin biosynthetic process	8.08E-03
110	GO:0051607: defense response to virus	8.08E-03
111	GO:0006183: GTP biosynthetic process	9.43E-03
112	GO:0006241: CTP biosynthetic process	9.43E-03
113	GO:0010214: seed coat development	9.43E-03
114	GO:0007389: pattern specification process	9.43E-03
115	GO:0030259: lipid glycosylation	9.43E-03
116	GO:0006165: nucleoside diphosphate phosphorylation	9.43E-03
117	GO:0019216: regulation of lipid metabolic process	9.43E-03
118	GO:0006228: UTP biosynthetic process	9.43E-03
119	GO:0010417: glucuronoxylan biosynthetic process	9.43E-03
120	GO:0042545: cell wall modification	1.09E-02
121	GO:0000023: maltose metabolic process	1.25E-02
122	GO:0006569: tryptophan catabolic process	1.29E-02
123	GO:0010072: primary shoot apical meristem specification	1.29E-02
124	GO:0010315: auxin efflux	1.29E-02
125	GO:0009772: photosynthetic electron transport in photosystem II	1.29E-02
126	GO:0009409: response to cold	1.30E-02
127	GO:0010267: production of ta-siRNAs involved in RNA interference	1.41E-02
128	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.41E-02
129	GO:0006414: translational elongation	1.59E-02
130	GO:0006749: glutathione metabolic process	1.67E-02
131	GO:0009913: epidermal cell differentiation	1.67E-02
132	GO:0009306: protein secretion	1.67E-02
133	GO:0007005: mitochondrion organization	1.67E-02
134	GO:0000105: histidine biosynthetic process	1.67E-02
135	GO:0008652: cellular amino acid biosynthetic process	1.98E-02
136	GO:0009814: defense response, incompatible interaction	2.10E-02
137	GO:0010583: response to cyclopentenone	2.10E-02
138	GO:0006189: 'de novo' IMP biosynthetic process	2.10E-02
139	GO:0010206: photosystem II repair	2.10E-02
140	GO:0006801: superoxide metabolic process	2.10E-02
141	GO:0009926: auxin polar transport	2.10E-02
142	GO:0010205: photoinhibition	2.10E-02
143	GO:0015979: photosynthesis	2.29E-02
144	GO:0007017: microtubule-based process	2.42E-02
145	GO:0043085: positive regulation of catalytic activity	2.43E-02
146	GO:0006200: obsolete ATP catabolic process	2.43E-02
147	GO:0051604: protein maturation	2.56E-02
148	GO:0043039: tRNA aminoacylation	2.56E-02
149	GO:0030245: cellulose catabolic process	2.56E-02
150	GO:0008295: spermidine biosynthetic process	2.56E-02
151	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.04E-02
152	GO:0040007: growth	3.04E-02
153	GO:0010015: root morphogenesis	3.04E-02
154	GO:0045087: innate immune response	3.04E-02
155	GO:0048868: pollen tube development	3.04E-02
156	GO:0009072: aromatic amino acid family metabolic process	3.04E-02
157	GO:0009585: red, far-red light phototransduction	3.04E-02
158	GO:0010466: negative regulation of peptidase activity	3.56E-02
159	GO:0009684: indoleacetic acid biosynthetic process	3.56E-02
160	GO:0009832: plant-type cell wall biogenesis	3.56E-02
161	GO:0009834: plant-type secondary cell wall biogenesis	3.56E-02
162	GO:0009697: salicylic acid biosynthetic process	4.11E-02
163	GO:0009790: embryo development	4.33E-02
164	GO:0019761: glucosinolate biosynthetic process	4.33E-02
165	GO:0045492: xylan biosynthetic process	4.69E-02
166	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
2	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
3	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
4	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
5	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
6	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
7	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
8	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
9	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
10	GO:0005048: signal sequence binding	0.00E+00
11	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
12	GO:0046408: chlorophyll synthetase activity	0.00E+00
13	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
14	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
15	GO:0042586: peptide deformylase activity	0.00E+00
16	GO:0004399: histidinol dehydrogenase activity	0.00E+00
17	GO:0003735: structural constituent of ribosome	1.22E-07
18	GO:0004812: aminoacyl-tRNA ligase activity	9.74E-06
19	GO:0004853: uroporphyrinogen decarboxylase activity	7.48E-05
20	GO:0004765: shikimate kinase activity	4.87E-04
21	GO:0016209: antioxidant activity	4.87E-04
22	GO:0004659: prenyltransferase activity	4.87E-04
23	GO:0003989: acetyl-CoA carboxylase activity	1.66E-03
24	GO:0004828: serine-tRNA ligase activity	1.66E-03
25	GO:0016851: magnesium chelatase activity	1.66E-03
26	GO:0004823: leucine-tRNA ligase activity	1.66E-03
27	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.66E-03
28	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.66E-03
29	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.66E-03
30	GO:0004831: tyrosine-tRNA ligase activity	1.66E-03
31	GO:0035250: UDP-galactosyltransferase activity	1.66E-03
32	GO:0010280: UDP-L-rhamnose synthase activity	1.66E-03
33	GO:0004362: glutathione-disulfide reductase activity	1.66E-03
34	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	1.66E-03
35	GO:0031177: phosphopantetheine binding	1.66E-03
36	GO:0070402: NADPH binding	1.66E-03
37	GO:0008194: UDP-glycosyltransferase activity	1.66E-03
38	GO:0008146: sulfotransferase activity	1.66E-03
39	GO:0050377: UDP-glucose 4,6-dehydratase activity	1.66E-03
40	GO:0004824: lysine-tRNA ligase activity	1.66E-03
41	GO:0004827: proline-tRNA ligase activity	1.66E-03
42	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.76E-03
43	GO:0008312: 7S RNA binding	2.34E-03
44	GO:0031072: heat shock protein binding	3.14E-03
45	GO:0004252: serine-type endopeptidase activity	3.30E-03
46	GO:0004075: biotin carboxylase activity	3.75E-03
47	GO:0045485: omega-6 fatty acid desaturase activity	3.75E-03
48	GO:0004392: heme oxygenase (decyclizing) activity	3.75E-03
49	GO:0051920: peroxiredoxin activity	3.75E-03
50	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	3.75E-03
51	GO:0004826: phenylalanine-tRNA ligase activity	3.75E-03
52	GO:0004462: lactoylglutathione lyase activity	3.75E-03
53	GO:0019843: rRNA binding	4.65E-03
54	GO:0046914: transition metal ion binding	4.75E-03
55	GO:0008831: dTDP-4-dehydrorhamnose reductase activity	6.35E-03
56	GO:0008460: dTDP-glucose 4,6-dehydratase activity	6.35E-03
57	GO:0000774: adenyl-nucleotide exchange factor activity	6.35E-03
58	GO:0032549: ribonucleoside binding	6.35E-03
59	GO:0015020: glucuronosyltransferase activity	6.35E-03
60	GO:0080116: glucuronoxylan glucuronosyltransferase activity	6.35E-03
61	GO:0051082: unfolded protein binding	7.26E-03
62	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	9.43E-03
63	GO:0004550: nucleoside diphosphate kinase activity	9.43E-03
64	GO:0003913: DNA photolyase activity	9.43E-03
65	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	9.43E-03
66	GO:0070569: uridylyltransferase activity	9.43E-03
67	GO:0003746: translation elongation factor activity	1.06E-02
68	GO:0016831: carboxy-lyase activity	1.09E-02
69	GO:0016987: sigma factor activity	1.29E-02
70	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.29E-02
71	GO:0008173: RNA methyltransferase activity	1.67E-02
72	GO:0005525: GTP binding	1.72E-02
73	GO:0003723: RNA binding	2.02E-02
74	GO:0004525: ribonuclease III activity	2.10E-02
75	GO:0008810: cellulase activity	2.10E-02
76	GO:0003924: GTPase activity	2.34E-02
77	GO:0004869: cysteine-type endopeptidase inhibitor activity	2.56E-02
78	GO:0051087: chaperone binding	2.56E-02
79	GO:0004784: superoxide dismutase activity	2.56E-02
80	GO:0043022: ribosome binding	2.56E-02
81	GO:0008266: poly(U) RNA binding	3.04E-02
82	GO:0030414: peptidase inhibitor activity	3.56E-02
83	GO:0000049: tRNA binding	3.56E-02
84	GO:0008236: serine-type peptidase activity	4.02E-02
85	GO:0016887: ATPase activity	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0055035: plastid thylakoid membrane	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0009507: chloroplast	5.76E-54
4	GO:0009570: chloroplast stroma	1.66E-47
5	GO:0009941: chloroplast envelope	2.99E-30
6	GO:0009535: chloroplast thylakoid membrane	2.57E-12
7	GO:0009579: thylakoid	1.61E-10
8	GO:0005840: ribosome	3.74E-10
9	GO:0030529: intracellular ribonucleoprotein complex	1.16E-06
10	GO:0009295: nucleoid	1.37E-06
11	GO:0009534: chloroplast thylakoid	1.72E-05
12	GO:0009840: chloroplastic endopeptidase Clp complex	2.56E-05
13	GO:0009532: plastid stroma	1.58E-04
14	GO:0000311: plastid large ribosomal subunit	1.66E-03
15	GO:0009527: plastid outer membrane	1.66E-03
16	GO:0009526: plastid envelope	1.66E-03
17	GO:0005960: glycine cleavage complex	1.66E-03
18	GO:0080085: signal recognition particle, chloroplast targeting	1.66E-03
19	GO:0009528: plastid inner membrane	1.66E-03
20	GO:0048500: signal recognition particle	1.76E-03
21	GO:0010319: stromule	1.84E-03
22	GO:0005622: intracellular	3.56E-03
23	GO:0009533: chloroplast stromal thylakoid	3.75E-03
24	GO:0009706: chloroplast inner membrane	4.11E-03
25	GO:0055028: cortical microtubule	6.35E-03
26	GO:0015934: large ribosomal subunit	9.66E-03
27	GO:0031977: thylakoid lumen	1.06E-02
28	GO:0009508: plastid chromosome	1.29E-02
29	GO:0019898: extrinsic component of membrane	1.67E-02
30	GO:0048046: apoplast	1.77E-02
31	GO:0019013: viral nucleocapsid	1.78E-02
32	GO:0009654: photosystem II oxygen evolving complex	2.10E-02
33	GO:0009523: photosystem II	3.44E-02
34	GO:0009536: plastid	4.20E-02
35	GO:0005875: microtubule associated complex	4.33E-02
36	GO:0015935: small ribosomal subunit	4.98E-02