co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G012397

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0035436: triose phosphate transmembrane transport	0.00E+00
2	GO:0015714: phosphoenolpyruvate transport	0.00E+00
3	GO:0030243: cellulose metabolic process	0.00E+00
4	GO:0030388: fructose 1,6-bisphosphate metabolic process	0.00E+00
5	GO:0055070: copper ion homeostasis	0.00E+00
6	GO:0051188: cofactor biosynthetic process	0.00E+00
7	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
8	GO:0042550: photosystem I stabilization	0.00E+00
9	GO:2000505: regulation of energy homeostasis	0.00E+00
10	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	0.00E+00
11	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
12	GO:0042221: response to chemical	0.00E+00
13	GO:0019676: ammonia assimilation cycle	0.00E+00
14	GO:0042549: photosystem II stabilization	0.00E+00
15	GO:0015979: photosynthesis	3.42E-26
16	GO:0010207: photosystem II assembly	5.09E-15
17	GO:0015995: chlorophyll biosynthetic process	1.60E-09
18	GO:0009637: response to blue light	3.27E-09
19	GO:0010114: response to red light	5.73E-09
20	GO:0009773: photosynthetic electron transport in photosystem I	7.69E-09
21	GO:0010218: response to far red light	9.65E-09
22	GO:0010027: thylakoid membrane organization	2.93E-08
23	GO:0043085: positive regulation of catalytic activity	8.33E-08
24	GO:0006098: pentose-phosphate shunt	8.46E-08
25	GO:0016117: carotenoid biosynthetic process	1.18E-07
26	GO:0000023: maltose metabolic process	3.65E-07
27	GO:0019252: starch biosynthetic process	6.62E-07
28	GO:0006364: rRNA processing	7.61E-07
29	GO:0009772: photosynthetic electron transport in photosystem II	1.28E-06
30	GO:0009902: chloroplast relocation	1.42E-06
31	GO:0010103: stomatal complex morphogenesis	9.93E-06
32	GO:0015977: carbon fixation	1.52E-05
33	GO:0006814: sodium ion transport	3.29E-05
34	GO:0010196: nonphotochemical quenching	6.84E-05
35	GO:0009595: detection of biotic stimulus	6.84E-05
36	GO:0043900: regulation of multi-organism process	1.24E-04
37	GO:0019684: photosynthesis, light reaction	1.55E-04
38	GO:0010155: regulation of proton transport	1.88E-04
39	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.96E-04
40	GO:0035304: regulation of protein dephosphorylation	2.66E-04
41	GO:0009108: coenzyme biosynthetic process	2.87E-04
42	GO:0010206: photosystem II repair	2.87E-04
43	GO:0009106: lipoate metabolic process	2.87E-04
44	GO:0006766: vitamin metabolic process	2.87E-04
45	GO:0015986: ATP synthesis coupled proton transport	3.11E-04
46	GO:0010310: regulation of hydrogen peroxide metabolic process	3.94E-04
47	GO:0019253: reductive pentose-phosphate cycle	4.90E-04
48	GO:0009072: aromatic amino acid family metabolic process	5.19E-04
49	GO:0009409: response to cold	6.53E-04
50	GO:0009697: salicylic acid biosynthetic process	8.22E-04
51	GO:0006354: DNA-templated transcription, elongation	8.22E-04
52	GO:0016556: mRNA modification	8.22E-04
53	GO:0019344: cysteine biosynthetic process	8.33E-04
54	GO:0006546: glycine catabolic process	1.00E-03
55	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.00E-03
56	GO:0009765: photosynthesis, light harvesting	1.00E-03
57	GO:0006875: cellular metal ion homeostasis	1.14E-03
58	GO:0042793: transcription from plastid promoter	1.41E-03
59	GO:0006636: unsaturated fatty acid biosynthetic process	1.64E-03
60	GO:0009750: response to fructose	1.88E-03
61	GO:0006833: water transport	1.88E-03
62	GO:0019760: glucosinolate metabolic process	1.91E-03
63	GO:0006733: oxidoreduction coenzyme metabolic process	1.91E-03
64	GO:0016024: CDP-diacylglycerol biosynthetic process	1.91E-03
65	GO:0051289: protein homotetramerization	1.91E-03
66	GO:0009624: response to nematode	2.10E-03
67	GO:0009749: response to glucose	2.14E-03
68	GO:0009657: plastid organization	2.14E-03
69	GO:0018298: protein-chromophore linkage	2.40E-03
70	GO:0009966: regulation of signal transduction	2.40E-03
71	GO:0006096: glycolytic process	2.52E-03
72	GO:0006612: protein targeting to membrane	2.71E-03
73	GO:0010200: response to chitin	2.71E-03
74	GO:0050821: protein stabilization	2.76E-03
75	GO:0016485: protein processing	2.76E-03
76	GO:0019216: regulation of lipid metabolic process	2.76E-03
77	GO:0051260: protein homooligomerization	2.76E-03
78	GO:0009117: nucleotide metabolic process	2.76E-03
79	GO:0045037: protein import into chloroplast stroma	2.76E-03
80	GO:0046777: protein autophosphorylation	3.03E-03
81	GO:0010363: regulation of plant-type hypersensitive response	3.03E-03
82	GO:0009867: jasmonic acid mediated signaling pathway	3.38E-03
83	GO:0031348: negative regulation of defense response	3.38E-03
84	GO:0009695: jasmonic acid biosynthetic process	3.38E-03
85	GO:0070838: divalent metal ion transport	3.78E-03
86	GO:0006796: phosphate-containing compound metabolic process	3.78E-03
87	GO:0000096: sulfur amino acid metabolic process	3.78E-03
88	GO:0034755: iron ion transmembrane transport	3.78E-03
89	GO:0019748: secondary metabolic process	3.78E-03
90	GO:0007568: aging	3.78E-03
91	GO:0042742: defense response to bacterium	3.96E-03
92	GO:0009853: photorespiration	4.56E-03
93	GO:0046688: response to copper ion	4.89E-03
94	GO:0006542: glutamine biosynthetic process	4.89E-03
95	GO:0017148: negative regulation of translation	4.89E-03
96	GO:0006568: tryptophan metabolic process	4.89E-03
97	GO:0000165: MAPK cascade	4.98E-03
98	GO:0000413: protein peptidyl-prolyl isomerization	4.98E-03
99	GO:0034660: ncRNA metabolic process	6.09E-03
100	GO:0010205: photoinhibition	6.09E-03
101	GO:0030003: cellular cation homeostasis	6.09E-03
102	GO:0009411: response to UV	6.09E-03
103	GO:0005985: sucrose metabolic process	7.39E-03
104	GO:0046939: nucleotide phosphorylation	7.39E-03
105	GO:0019761: glucosinolate biosynthetic process	7.45E-03
106	GO:0080167: response to karrikin	7.96E-03
107	GO:0055114: oxidation-reduction process	8.78E-03
108	GO:0000162: tryptophan biosynthetic process	8.79E-03
109	GO:0009832: plant-type cell wall biogenesis	1.02E-02
110	GO:0006006: glucose metabolic process	1.18E-02
111	GO:0006754: ATP biosynthetic process	1.18E-02
112	GO:0009744: response to sucrose	1.18E-02
113	GO:0022900: electron transport chain	1.57E-02
114	GO:0009767: photosynthetic electron transport chain	1.69E-02
115	GO:0031408: oxylipin biosynthetic process	1.69E-02
116	GO:0006108: malate metabolic process	1.69E-02
117	GO:0007030: Golgi organization	1.88E-02
118	GO:0016049: cell growth	2.07E-02
119	GO:0006972: hyperosmotic response	2.07E-02
120	GO:0015992: proton transport	2.27E-02
121	GO:0016126: sterol biosynthetic process	2.27E-02
122	GO:0050832: defense response to fungus	2.40E-02
123	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.48E-02
124	GO:0046686: response to cadmium ion	2.74E-02
125	GO:0006139: nucleobase-containing compound metabolic process	2.91E-02
126	GO:0006807: nitrogen compound metabolic process	2.91E-02
127	GO:0009817: defense response to fungus, incompatible interaction	3.14E-02
128	GO:0009735: response to cytokinin	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0015131: oxaloacetate transmembrane transporter activity	0.00E+00
2	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
3	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
4	GO:0009496: plastoquinol--plastocyanin reductase activity	0.00E+00
5	GO:0045550: geranylgeranyl reductase activity	0.00E+00
6	GO:0010242: oxygen evolving activity	0.00E+00
7	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
8	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
9	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
10	GO:0004802: transketolase activity	0.00E+00
11	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
12	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
13	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
14	GO:0051738: xanthophyll binding	0.00E+00
15	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.65E-07
16	GO:0016984: ribulose-bisphosphate carboxylase activity	4.44E-07
17	GO:0016168: chlorophyll binding	7.63E-06
18	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	4.56E-05
19	GO:0004332: fructose-bisphosphate aldolase activity	6.84E-05
20	GO:0015140: malate transmembrane transporter activity	4.90E-04
21	GO:0016679: oxidoreductase activity, acting on diphenols and related substances as donors	4.90E-04
22	GO:0004618: phosphoglycerate kinase activity	4.90E-04
23	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	4.90E-04
24	GO:0015088: copper uptake transmembrane transporter activity	4.90E-04
25	GO:0005215: transporter activity	8.35E-04
26	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.14E-03
27	GO:0004605: phosphatidate cytidylyltransferase activity	1.14E-03
28	GO:0051920: peroxiredoxin activity	1.14E-03
29	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.14E-03
30	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	1.91E-03
31	GO:0016209: antioxidant activity	2.76E-03
32	GO:0071949: FAD binding	2.76E-03
33	GO:0051537: 2 iron, 2 sulfur cluster binding	3.38E-03
34	GO:0004470: malic enzyme activity	3.78E-03
35	GO:0004017: adenylate kinase activity	3.78E-03
36	GO:0005381: iron ion transmembrane transporter activity	3.78E-03
37	GO:0016829: lyase activity	3.90E-03
38	GO:0004356: glutamate-ammonia ligase activity	4.89E-03
39	GO:0004834: tryptophan synthase activity	4.89E-03
40	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.90E-03
41	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	6.09E-03
42	GO:0019201: nucleotide kinase activity	6.09E-03
43	GO:0008121: ubiquinol-cytochrome-c reductase activity	6.09E-03
44	GO:0019205: nucleobase-containing compound kinase activity	6.09E-03
45	GO:0016776: phosphotransferase activity, phosphate group as acceptor	8.79E-03
46	GO:0004427: inorganic diphosphatase activity	8.79E-03
47	GO:0042578: phosphoric ester hydrolase activity	8.79E-03
48	GO:0008266: poly(U) RNA binding	8.79E-03
49	GO:0046914: transition metal ion binding	1.18E-02
50	GO:0042803: protein homodimerization activity	1.65E-02
51	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.88E-02
52	GO:0004713: protein tyrosine kinase activity	2.07E-02
53	GO:0005507: copper ion binding	2.19E-02
54	GO:0008080: N-acetyltransferase activity	2.27E-02
55	GO:0051287: NAD binding	2.40E-02
56	GO:0051536: iron-sulfur cluster binding	2.51E-02
57	GO:0005509: calcium ion binding	3.10E-02
58	GO:0015078: hydrogen ion transmembrane transporter activity	3.37E-02
59	GO:0009055: electron carrier activity	3.78E-02
60	GO:0016597: amino acid binding	3.86E-02
61	GO:0051539: 4 iron, 4 sulfur cluster binding	4.36E-02
62	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0009538: photosystem I reaction center	0.00E+00
2	GO:0009512: cytochrome b6f complex	0.00E+00
3	GO:0030093: chloroplast photosystem I	0.00E+00
4	GO:0009279: cell outer membrane	0.00E+00
5	GO:0009535: chloroplast thylakoid membrane	3.06E-32
6	GO:0009507: chloroplast	4.85E-32
7	GO:0009579: thylakoid	6.57E-29
8	GO:0009941: chloroplast envelope	2.32E-26
9	GO:0009522: photosystem I	1.85E-14
10	GO:0010287: plastoglobule	1.19E-12
11	GO:0031977: thylakoid lumen	4.24E-12
12	GO:0009543: chloroplast thylakoid lumen	4.40E-12
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.12E-11
14	GO:0009570: chloroplast stroma	3.59E-10
15	GO:0009523: photosystem II	1.78E-09
16	GO:0016020: membrane	1.36E-08
17	GO:0009534: chloroplast thylakoid	1.13E-06
18	GO:0019898: extrinsic component of membrane	2.87E-06
19	GO:0009654: photosystem II oxygen evolving complex	5.51E-06
20	GO:0048046: apoplast	5.54E-06
21	GO:0009508: plastid chromosome	1.24E-04
22	GO:0009517: PSII associated light-harvesting complex II	4.90E-04
23	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	4.90E-04
24	GO:0009295: nucleoid	1.00E-03
25	GO:0010319: stromule	1.02E-03
26	GO:0009533: chloroplast stromal thylakoid	1.14E-03
27	GO:0042651: thylakoid membrane	1.41E-03
28	GO:0009536: plastid	5.18E-03
29	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	6.09E-03
30	GO:0022626: cytosolic ribosome	2.12E-02
31	GO:0009706: chloroplast inner membrane	3.61E-02