co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G012262

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006419: alanyl-tRNA aminoacylation	0.00E+00
2	GO:0030261: chromosome condensation	0.00E+00
3	GO:0048574: long-day photoperiodism, flowering	0.00E+00
4	GO:0032465: regulation of cytokinesis	0.00E+00
5	GO:0031118: rRNA pseudouridine synthesis	0.00E+00
6	GO:0043137: DNA replication, removal of RNA primer	0.00E+00
7	GO:0070143: mitochondrial alanyl-tRNA aminoacylation	0.00E+00
8	GO:0006259: DNA metabolic process	2.13E-05
9	GO:0009909: regulation of flower development	6.06E-05
10	GO:0006265: DNA topological change	9.08E-05
11	GO:0006281: DNA repair	2.26E-04
12	GO:0016572: histone phosphorylation	3.92E-04
13	GO:0045292: mRNA cis splicing, via spliceosome	4.06E-04
14	GO:0007059: chromosome segregation	4.06E-04
15	GO:0051028: mRNA transport	4.06E-04
16	GO:1990426: mitotic recombination-dependent replication fork processing	4.06E-04
17	GO:0006396: RNA processing	4.23E-04
18	GO:0019915: lipid storage	7.60E-04
19	GO:0001522: pseudouridine synthesis	9.14E-04
20	GO:0043987: histone H3-S10 phosphorylation	9.49E-04
21	GO:0009956: radial pattern formation	9.49E-04
22	GO:0009640: photomorphogenesis	1.02E-03
23	GO:0010162: seed dormancy process	1.26E-03
24	GO:0006334: nucleosome assembly	1.40E-03
25	GO:0050826: response to freezing	1.45E-03
26	GO:0048235: pollen sperm cell differentiation	1.60E-03
27	GO:0010638: positive regulation of organelle organization	1.60E-03
28	GO:0034968: histone lysine methylation	1.66E-03
29	GO:0006094: gluconeogenesis	1.66E-03
30	GO:0006310: DNA recombination	1.87E-03
31	GO:0031053: primary miRNA processing	2.32E-03
32	GO:0008356: asymmetric cell division	2.32E-03
33	GO:0010182: sugar mediated signaling pathway	2.33E-03
34	GO:0043622: cortical microtubule organization	3.14E-03
35	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	3.14E-03
36	GO:0033044: regulation of chromosome organization	3.14E-03
37	GO:0009845: seed germination	3.16E-03
38	GO:0051276: chromosome organization	4.07E-03
39	GO:0010050: vegetative phase change	4.07E-03
40	GO:0007267: cell-cell signaling	4.07E-03
41	GO:0000226: microtubule cytoskeleton organization	4.16E-03
42	GO:0001510: RNA methylation	4.16E-03
43	GO:0007049: cell cycle	4.53E-03
44	GO:0006366: transcription from RNA polymerase II promoter	5.06E-03
45	GO:0055072: iron ion homeostasis	5.06E-03
46	GO:0006084: acetyl-CoA metabolic process	5.06E-03
47	GO:0010583: response to cyclopentenone	5.06E-03
48	GO:0010073: meristem maintenance	6.14E-03
49	GO:0010074: maintenance of meristem identity	6.14E-03
50	GO:0051604: protein maturation	6.14E-03
51	GO:0043039: tRNA aminoacylation	6.14E-03
52	GO:0000911: cytokinesis by cell plate formation	7.04E-03
53	GO:0061025: membrane fusion	7.30E-03
54	GO:0006342: chromatin silencing	7.30E-03
55	GO:0048443: stamen development	7.30E-03
56	GO:0090305: nucleic acid phosphodiester bond hydrolysis	7.30E-03
57	GO:0006302: double-strand break repair	7.30E-03
58	GO:0051567: histone H3-K9 methylation	7.53E-03
59	GO:0016567: protein ubiquitination	7.90E-03
60	GO:0006338: chromatin remodeling	8.51E-03
61	GO:0009451: RNA modification	8.51E-03
62	GO:0006306: DNA methylation	8.53E-03
63	GO:0006284: base-excision repair	9.80E-03
64	GO:0006312: mitotic recombination	9.80E-03
65	GO:0006479: protein methylation	9.80E-03
66	GO:0016070: RNA metabolic process	9.80E-03
67	GO:0009616: virus induced gene silencing	9.80E-03
68	GO:0006499: N-terminal protein myristoylation	9.80E-03
69	GO:0008283: cell proliferation	1.08E-02
70	GO:0006974: cellular response to DNA damage stimulus	1.11E-02
71	GO:0051225: spindle assembly	1.11E-02
72	GO:0032508: DNA duplex unwinding	1.26E-02
73	GO:0009165: nucleotide biosynthetic process	1.26E-02
74	GO:0010332: response to gamma radiation	1.26E-02
75	GO:0031048: chromatin silencing by small RNA	1.40E-02
76	GO:0048316: seed development	1.40E-02
77	GO:0006406: mRNA export from nucleus	1.40E-02
78	GO:0006289: nucleotide-excision repair	1.40E-02
79	GO:0009855: determination of bilateral symmetry	1.56E-02
80	GO:0010014: meristem initiation	1.56E-02
81	GO:0007131: reciprocal meiotic recombination	1.56E-02
82	GO:0010197: polar nucleus fusion	1.56E-02
83	GO:0007062: sister chromatid cohesion	1.72E-02
84	GO:0030036: actin cytoskeleton organization	1.88E-02
85	GO:0016126: sterol biosynthetic process	1.88E-02
86	GO:0000724: double-strand break repair via homologous recombination	1.88E-02
87	GO:0035196: production of miRNAs involved in gene silencing by miRNA	2.06E-02
88	GO:0044267: cellular protein metabolic process	2.06E-02
89	GO:0009966: regulation of signal transduction	2.06E-02
90	GO:0010267: production of ta-siRNAs involved in RNA interference	2.06E-02
91	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.23E-02
92	GO:0006260: DNA replication	2.26E-02
93	GO:0010090: trichome morphogenesis	2.41E-02
94	GO:0051258: protein polymerization	2.60E-02
95	GO:0000278: mitotic cell cycle	2.60E-02
96	GO:0006346: methylation-dependent chromatin silencing	2.60E-02
97	GO:0042254: ribosome biogenesis	2.99E-02
98	GO:0007017: microtubule-based process	2.99E-02
99	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	3.19E-02
100	GO:0009933: meristem structural organization	3.40E-02
101	GO:0009560: embryo sac egg cell differentiation	3.61E-02
102	GO:0006397: mRNA processing	4.05E-02
103	GO:0009220: pyrimidine ribonucleotide biosynthetic process	4.05E-02
104	GO:0048366: leaf development	4.28E-02
105	GO:0009086: methionine biosynthetic process	4.28E-02
106	GO:0006096: glycolytic process	4.30E-02

Rank	GO Term	Adjusted P value
1	GO:0008409: 5'-3' exonuclease activity	0.00E+00
2	GO:0004813: alanine-tRNA ligase activity	0.00E+00
3	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	4.98E-05
4	GO:0030515: snoRNA binding	4.98E-05
5	GO:0017108: 5'-flap endonuclease activity	4.06E-04
6	GO:0000150: recombinase activity	4.06E-04
7	GO:0003916: DNA topoisomerase activity	4.06E-04
8	GO:0000339: RNA cap binding	4.06E-04
9	GO:0003684: damaged DNA binding	6.23E-04
10	GO:0003690: double-stranded DNA binding	7.60E-04
11	GO:0003697: single-stranded DNA binding	7.60E-04
12	GO:0035175: histone kinase activity (H3-S10 specific)	9.49E-04
13	GO:0070628: proteasome binding	1.60E-03
14	GO:0005200: structural constituent of cytoskeleton	2.09E-03
15	GO:0003676: nucleic acid binding	2.35E-03
16	GO:0046982: protein heterodimerization activity	2.46E-03
17	GO:0016876: ligase activity, forming aminoacyl-tRNA and related compounds	3.14E-03
18	GO:0003843: 1,3-beta-D-glucan synthase activity	3.14E-03
19	GO:0008536: Ran GTPase binding	4.07E-03
20	GO:0003729: mRNA binding	4.07E-03
21	GO:0043130: ubiquitin binding	6.14E-03
22	GO:0008094: DNA-dependent ATPase activity	6.14E-03
23	GO:0000049: tRNA binding	8.51E-03
24	GO:0009982: pseudouridine synthase activity	8.51E-03
25	GO:0005484: SNAP receptor activity	9.80E-03
26	GO:0004518: nuclease activity	9.80E-03
27	GO:0003677: DNA binding	1.16E-02
28	GO:0004519: endonuclease activity	1.26E-02
29	GO:0004527: exonuclease activity	1.56E-02
30	GO:0003723: RNA binding	2.57E-02
31	GO:0008565: protein transporter activity	2.60E-02
32	GO:0051082: unfolded protein binding	3.36E-02
33	GO:0045735: nutrient reservoir activity	4.28E-02
34	GO:0004601: peroxidase activity	4.30E-02
35	GO:0003746: translation elongation factor activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0033095: aleurone grain	0.00E+00
2	GO:0000812: Swr1 complex	0.00E+00
3	GO:0005730: nucleolus	7.38E-08
4	GO:0005694: chromosome	3.29E-06
5	GO:0019013: viral nucleocapsid	7.27E-06
6	GO:0035267: NuA4 histone acetyltransferase complex	4.06E-04
7	GO:0005846: nuclear cap binding complex	4.06E-04
8	GO:0072588: box H/ACA RNP complex	4.06E-04
9	GO:0000786: nucleosome	1.14E-03
10	GO:0000775: chromosome, centromeric region	1.60E-03
11	GO:0000148: 1,3-beta-D-glucan synthase complex	3.14E-03
12	GO:0005732: small nucleolar ribonucleoprotein complex	3.14E-03
13	GO:0030529: intracellular ribonucleoprotein complex	3.43E-03
14	GO:0031011: Ino80 complex	4.07E-03
15	GO:0012505: endomembrane system	5.06E-03
16	GO:0015030: Cajal body	5.06E-03
17	GO:0005634: nucleus	5.14E-03
18	GO:0016272: prefoldin complex	6.14E-03
19	GO:0005744: mitochondrial inner membrane presequence translocase complex	6.14E-03
20	GO:0016604: nuclear body	6.14E-03
21	GO:0000151: ubiquitin ligase complex	1.11E-02
22	GO:0005643: nuclear pore	1.56E-02
23	GO:0009504: cell plate	1.88E-02
24	GO:0005654: nucleoplasm	2.06E-02
25	GO:0031966: mitochondrial membrane	2.06E-02
26	GO:0009506: plasmodesma	2.09E-02
27	GO:0005819: spindle	2.60E-02
28	GO:0043234: protein complex	2.79E-02
29	GO:0009524: phragmoplast	4.05E-02