co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G009519

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900865: chloroplast RNA modification	0.00E+00
2	GO:0032543: mitochondrial translation	0.00E+00
3	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
4	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
5	GO:0009658: chloroplast organization	3.12E-13
6	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	9.83E-08
7	GO:0010027: thylakoid membrane organization	9.41E-07
8	GO:0006399: tRNA metabolic process	2.53E-06
9	GO:1901671: positive regulation of superoxide dismutase activity	3.15E-06
10	GO:0009902: chloroplast relocation	7.30E-06
11	GO:0045893: positive regulation of transcription, DNA-templated	1.07E-05
12	GO:0006364: rRNA processing	1.09E-05
13	GO:0006457: protein folding	1.45E-05
14	GO:0019344: cysteine biosynthetic process	1.47E-05
15	GO:0042793: transcription from plastid promoter	2.30E-05
16	GO:0006655: phosphatidylglycerol biosynthetic process	2.30E-05
17	GO:0009073: aromatic amino acid family biosynthetic process	2.59E-04
18	GO:0006788: heme oxidation	2.83E-04
19	GO:0018160: peptidyl-pyrromethane cofactor linkage	2.83E-04
20	GO:0006433: prolyl-tRNA aminoacylation	2.83E-04
21	GO:0071722: detoxification of arsenic-containing substance	2.83E-04
22	GO:0016226: iron-sulfur cluster assembly	3.93E-04
23	GO:0045036: protein targeting to chloroplast	5.40E-04
24	GO:0010024: phytochromobilin biosynthetic process	6.67E-04
25	GO:0010380: regulation of chlorophyll biosynthetic process	6.67E-04
26	GO:0010109: regulation of photosynthesis	6.67E-04
27	GO:0015995: chlorophyll biosynthetic process	7.69E-04
28	GO:0006200: obsolete ATP catabolic process	9.54E-04
29	GO:0030154: cell differentiation	9.97E-04
30	GO:0006450: regulation of translational fidelity	1.14E-03
31	GO:0006733: oxidoreduction coenzyme metabolic process	1.14E-03
32	GO:0000304: response to singlet oxygen	1.14E-03
33	GO:0010207: photosystem II assembly	1.24E-03
34	GO:0010103: stomatal complex morphogenesis	1.28E-03
35	GO:0035304: regulation of protein dephosphorylation	1.43E-03
36	GO:0006782: protoporphyrinogen IX biosynthetic process	1.67E-03
37	GO:0009117: nucleotide metabolic process	1.67E-03
38	GO:0045037: protein import into chloroplast stroma	1.67E-03
39	GO:0045038: protein import into chloroplast thylakoid membrane	1.67E-03
40	GO:0006081: cellular aldehyde metabolic process	2.23E-03
41	GO:0019748: secondary metabolic process	2.23E-03
42	GO:0010468: regulation of gene expression	2.23E-03
43	GO:0006749: glutathione metabolic process	2.86E-03
44	GO:0031347: regulation of defense response	2.86E-03
45	GO:0033014: tetrapyrrole biosynthetic process	3.58E-03
46	GO:0010206: photosystem II repair	3.58E-03
47	GO:0034660: ncRNA metabolic process	3.58E-03
48	GO:0009106: lipoate metabolic process	3.58E-03
49	GO:0032880: regulation of protein localization	3.58E-03
50	GO:0006766: vitamin metabolic process	3.58E-03
51	GO:0009108: coenzyme biosynthetic process	3.58E-03
52	GO:0048481: plant ovule development	4.54E-03
53	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	5.13E-03
54	GO:0045087: innate immune response	5.13E-03
55	GO:0009407: toxin catabolic process	5.98E-03
56	GO:0000302: response to reactive oxygen species	5.98E-03
57	GO:0006546: glycine catabolic process	7.83E-03
58	GO:0006779: porphyrin-containing compound biosynthetic process	7.83E-03
59	GO:0009965: leaf morphogenesis	8.00E-03
60	GO:0009409: response to cold	9.49E-03
61	GO:0031408: oxylipin biosynthetic process	9.86E-03
62	GO:0048316: seed development	9.86E-03
63	GO:0006636: unsaturated fatty acid biosynthetic process	1.09E-02
64	GO:0006508: proteolysis	1.14E-02
65	GO:0042545: cell wall modification	1.20E-02
66	GO:0019684: photosynthesis, light reaction	1.32E-02
67	GO:0010155: regulation of proton transport	1.44E-02
68	GO:0009627: systemic acquired resistance	1.56E-02
69	GO:0006352: DNA-templated transcription, initiation	1.56E-02
70	GO:0009773: photosynthetic electron transport in photosystem I	1.69E-02
71	GO:0046777: protein autophosphorylation	1.69E-02
72	GO:0006098: pentose-phosphate shunt	1.70E-02
73	GO:0009553: embryo sac development	1.82E-02
74	GO:0009695: jasmonic acid biosynthetic process	1.82E-02
75	GO:0006869: lipid transport	1.82E-02
76	GO:0006626: protein targeting to mitochondrion	2.38E-02
77	GO:0030163: protein catabolic process	2.52E-02
78	GO:0045454: cell redox homeostasis	2.52E-02
79	GO:0016117: carotenoid biosynthetic process	2.98E-02
80	GO:0009637: response to blue light	2.98E-02
81	GO:0010114: response to red light	3.31E-02
82	GO:0009408: response to heat	3.60E-02
83	GO:0010218: response to far red light	3.65E-02
84	GO:0000023: maltose metabolic process	3.82E-02
85	GO:0006418: tRNA aminoacylation for protein translation	3.99E-02
86	GO:0009744: response to sucrose	4.35E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
3	GO:0000774: adenyl-nucleotide exchange factor activity	1.16E-05
4	GO:0004252: serine-type endopeptidase activity	1.82E-05
5	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.21E-04
6	GO:0051087: chaperone binding	1.69E-04
7	GO:0004362: glutathione-disulfide reductase activity	2.83E-04
8	GO:0004827: proline-tRNA ligase activity	2.83E-04
9	GO:0004418: hydroxymethylbilane synthase activity	2.83E-04
10	GO:0046914: transition metal ion binding	3.68E-04
11	GO:0004853: uroporphyrinogen decarboxylase activity	6.67E-04
12	GO:0004392: heme oxygenase (decyclizing) activity	6.67E-04
13	GO:0032549: ribonucleoside binding	1.14E-03
14	GO:0004659: prenyltransferase activity	1.67E-03
15	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	1.67E-03
16	GO:0004765: shikimate kinase activity	1.67E-03
17	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	1.67E-03
18	GO:0016887: ATPase activity	1.84E-03
19	GO:0016987: sigma factor activity	2.23E-03
20	GO:0005524: ATP binding	2.88E-03
21	GO:0051082: unfolded protein binding	3.35E-03
22	GO:0008266: poly(U) RNA binding	5.13E-03
23	GO:0005507: copper ion binding	6.76E-03
24	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	6.85E-03
25	GO:0042803: protein homodimerization activity	7.61E-03
26	GO:0016831: carboxy-lyase activity	1.20E-02
27	GO:0031072: heat shock protein binding	1.82E-02
28	GO:0000166: nucleotide binding	1.89E-02
29	GO:0004222: metalloendopeptidase activity	2.09E-02
30	GO:0042802: identical protein binding	2.52E-02
31	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	2.83E-02
32	GO:0005525: GTP binding	4.26E-02
33	GO:0004812: aminoacyl-tRNA ligase activity	4.35E-02
34	GO:0050661: NADP binding	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0009507: chloroplast	7.82E-17
3	GO:0009570: chloroplast stroma	5.91E-12
4	GO:0009941: chloroplast envelope	6.11E-10
5	GO:0009535: chloroplast thylakoid membrane	1.88E-08
6	GO:0009532: plastid stroma	2.53E-06
7	GO:0009579: thylakoid	1.72E-05
8	GO:0009840: chloroplastic endopeptidase Clp complex	4.99E-05
9	GO:0009534: chloroplast thylakoid	6.30E-05
10	GO:0005759: mitochondrial matrix	1.79E-04
11	GO:0080085: signal recognition particle, chloroplast targeting	2.83E-04
12	GO:0009533: chloroplast stromal thylakoid	6.67E-04
13	GO:0009536: plastid	1.29E-03
14	GO:0009295: nucleoid	7.83E-03
15	GO:0042651: thylakoid membrane	9.86E-03
16	GO:0048046: apoplast	1.17E-02
17	GO:0005739: mitochondrion	1.48E-02
18	GO:0019013: viral nucleocapsid	1.69E-02
19	GO:0009706: chloroplast inner membrane	2.09E-02
20	GO:0005875: microtubule associated complex	3.14E-02
21	GO:0010319: stromule	3.31E-02