co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G008728

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
2	GO:0043953: protein transport by the Tat complex	0.00E+00
3	GO:0000372: Group I intron splicing	0.00E+00
4	GO:0046506: sulfolipid biosynthetic process	0.00E+00
5	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
6	GO:0042780: tRNA 3'-end processing	0.00E+00
7	GO:1900865: chloroplast RNA modification	0.00E+00
8	GO:0010157: response to chlorate	0.00E+00
9	GO:0042407: cristae formation	0.00E+00
10	GO:0006457: protein folding	1.81E-10
11	GO:0009658: chloroplast organization	2.22E-08
12	GO:0045036: protein targeting to chloroplast	7.11E-05
13	GO:0006782: protoporphyrinogen IX biosynthetic process	7.69E-05
14	GO:0010468: regulation of gene expression	1.38E-04
15	GO:0009306: protein secretion	2.19E-04
16	GO:0006399: tRNA metabolic process	4.38E-04
17	GO:0006788: heme oxidation	5.25E-04
18	GO:0018160: peptidyl-pyrromethane cofactor linkage	5.25E-04
19	GO:0032543: mitochondrial translation	5.25E-04
20	GO:0006423: cysteinyl-tRNA aminoacylation	5.25E-04
21	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	5.25E-04
22	GO:0006591: ornithine metabolic process	5.25E-04
23	GO:0006364: rRNA processing	7.38E-04
24	GO:0016556: mRNA modification	9.08E-04
25	GO:0010027: thylakoid membrane organization	1.02E-03
26	GO:0006779: porphyrin-containing compound biosynthetic process	1.11E-03
27	GO:0010380: regulation of chlorophyll biosynthetic process	1.22E-03
28	GO:1901671: positive regulation of superoxide dismutase activity	1.22E-03
29	GO:0010024: phytochromobilin biosynthetic process	1.22E-03
30	GO:0009642: response to light intensity	1.22E-03
31	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.55E-03
32	GO:0006655: phosphatidylglycerol biosynthetic process	1.56E-03
33	GO:0051085: chaperone mediated protein folding requiring cofactor	2.03E-03
34	GO:0016075: rRNA catabolic process	2.03E-03
35	GO:0043067: regulation of programmed cell death	2.03E-03
36	GO:0009231: riboflavin biosynthetic process	2.03E-03
37	GO:0009247: glycolipid biosynthetic process	2.03E-03
38	GO:0000304: response to singlet oxygen	2.03E-03
39	GO:0006450: regulation of translational fidelity	2.03E-03
40	GO:0045037: protein import into chloroplast stroma	2.96E-03
41	GO:0006353: DNA-templated transcription, termination	2.96E-03
42	GO:0019375: galactolipid biosynthetic process	2.96E-03
43	GO:0045038: protein import into chloroplast thylakoid membrane	2.96E-03
44	GO:0000373: Group II intron splicing	2.96E-03
45	GO:0042026: protein refolding	2.96E-03
46	GO:0009627: systemic acquired resistance	2.98E-03
47	GO:0009308: amine metabolic process	4.05E-03
48	GO:0009408: response to heat	4.90E-03
49	GO:0006749: glutathione metabolic process	5.23E-03
50	GO:0031347: regulation of defense response	5.23E-03
51	GO:0009902: chloroplast relocation	5.49E-03
52	GO:0034660: ncRNA metabolic process	6.52E-03
53	GO:0019538: protein metabolic process	6.52E-03
54	GO:0032880: regulation of protein localization	6.52E-03
55	GO:0009704: de-etiolation	6.52E-03
56	GO:0033014: tetrapyrrole biosynthetic process	6.52E-03
57	GO:0006189: 'de novo' IMP biosynthetic process	6.52E-03
58	GO:0010206: photosystem II repair	6.52E-03
59	GO:0009073: aromatic amino acid family biosynthetic process	7.06E-03
60	GO:0051604: protein maturation	7.91E-03
61	GO:0045087: innate immune response	9.41E-03
62	GO:0016226: iron-sulfur cluster assembly	9.48E-03
63	GO:0000302: response to reactive oxygen species	1.10E-02
64	GO:0009407: toxin catabolic process	1.10E-02
65	GO:0031408: oxylipin biosynthetic process	1.82E-02
66	GO:0042793: transcription from plastid promoter	1.82E-02
67	GO:0051607: defense response to virus	1.82E-02
68	GO:0010197: polar nucleus fusion	2.02E-02
69	GO:0010207: photosystem II assembly	2.21E-02
70	GO:0045893: positive regulation of transcription, DNA-templated	2.54E-02
71	GO:0006950: response to stress	2.57E-02
72	GO:0006396: RNA processing	2.65E-02
73	GO:0035196: production of miRNAs involved in gene silencing by miRNA	2.66E-02
74	GO:0008219: cell death	2.66E-02
75	GO:0044267: cellular protein metabolic process	2.66E-02
76	GO:0010267: production of ta-siRNAs involved in RNA interference	2.66E-02
77	GO:0016036: cellular response to phosphate starvation	2.66E-02
78	GO:0010103: stomatal complex morphogenesis	2.89E-02
79	GO:0006352: DNA-templated transcription, initiation	2.89E-02
80	GO:0006807: nitrogen compound metabolic process	3.12E-02
81	GO:0035304: regulation of protein dephosphorylation	3.12E-02
82	GO:0006869: lipid transport	3.37E-02
83	GO:0009409: response to cold	3.51E-02
84	GO:0009853: photorespiration	4.14E-02
85	GO:0006626: protein targeting to mitochondrion	4.40E-02
86	GO:0006520: cellular amino acid metabolic process	4.40E-02
87	GO:0030163: protein catabolic process	4.68E-02
88	GO:0009735: response to cytokinin	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
2	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
3	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
4	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
5	GO:0003919: FMN adenylyltransferase activity	0.00E+00
6	GO:0051082: unfolded protein binding	3.60E-06
7	GO:0004853: uroporphyrinogen decarboxylase activity	9.62E-06
8	GO:0000774: adenyl-nucleotide exchange factor activity	3.43E-05
9	GO:0051087: chaperone binding	4.38E-04
10	GO:0004585: ornithine carbamoyltransferase activity	5.25E-04
11	GO:0008146: sulfotransferase activity	5.25E-04
12	GO:0004817: cysteine-tRNA ligase activity	5.25E-04
13	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	5.25E-04
14	GO:0004418: hydroxymethylbilane synthase activity	5.25E-04
15	GO:0004362: glutathione-disulfide reductase activity	5.25E-04
16	GO:0004252: serine-type endopeptidase activity	1.02E-03
17	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.22E-03
18	GO:0004392: heme oxygenase (decyclizing) activity	1.22E-03
19	GO:0016743: carboxyl- or carbamoyltransferase activity	2.03E-03
20	GO:0016831: carboxy-lyase activity	2.07E-03
21	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	2.96E-03
22	GO:0003913: DNA photolyase activity	2.96E-03
23	GO:0031072: heat shock protein binding	3.74E-03
24	GO:0008565: protein transporter activity	3.74E-03
25	GO:0016987: sigma factor activity	4.05E-03
26	GO:0008173: RNA methyltransferase activity	5.23E-03
27	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	6.52E-03
28	GO:0004525: ribonuclease III activity	6.52E-03
29	GO:0005507: copper ion binding	7.31E-03
30	GO:0008266: poly(U) RNA binding	9.41E-03
31	GO:0046914: transition metal ion binding	1.26E-02
32	GO:0042803: protein homodimerization activity	1.82E-02
33	GO:0016829: lyase activity	2.00E-02
34	GO:0048038: quinone binding	2.02E-02
35	GO:0016597: amino acid binding	4.14E-02
36	GO:0005525: GTP binding	4.20E-02

Rank	GO Term	Adjusted P value
1	GO:0042646: plastid nucleoid	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	8.26E-16
4	GO:0009570: chloroplast stroma	9.35E-11
5	GO:0009941: chloroplast envelope	4.61E-09
6	GO:0009535: chloroplast thylakoid membrane	1.60E-06
7	GO:0009532: plastid stroma	1.12E-05
8	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	5.25E-04
9	GO:0009526: plastid envelope	5.25E-04
10	GO:0005759: mitochondrial matrix	6.08E-04
11	GO:0009579: thylakoid	1.07E-03
12	GO:0009533: chloroplast stromal thylakoid	1.22E-03
13	GO:0009536: plastid	1.64E-03
14	GO:0009840: chloroplastic endopeptidase Clp complex	4.05E-03
15	GO:0009706: chloroplast inner membrane	4.58E-03
16	GO:0019898: extrinsic component of membrane	5.23E-03
17	GO:0009654: photosystem II oxygen evolving complex	6.52E-03
18	GO:0010319: stromule	8.84E-03
19	GO:0005739: mitochondrion	1.48E-02
20	GO:0048046: apoplast	4.28E-02
21	GO:0009523: photosystem II	4.96E-02