co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G006121

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
2	GO:0043085: positive regulation of catalytic activity	3.42E-08
3	GO:0015979: photosynthesis	5.90E-07
4	GO:0009773: photosynthetic electron transport in photosystem I	7.87E-07
5	GO:0010207: photosystem II assembly	2.01E-06
6	GO:0009657: plastid organization	2.01E-05
7	GO:0015995: chlorophyll biosynthetic process	2.23E-05
8	GO:0006766: vitamin metabolic process	6.63E-05
9	GO:0009108: coenzyme biosynthetic process	6.63E-05
10	GO:0009106: lipoate metabolic process	6.63E-05
11	GO:0009072: aromatic amino acid family metabolic process	1.27E-04
12	GO:0009637: response to blue light	1.35E-04
13	GO:0006098: pentose-phosphate shunt	1.48E-04
14	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.48E-04
15	GO:0010114: response to red light	1.68E-04
16	GO:0006878: cellular copper ion homeostasis	1.93E-04
17	GO:0010218: response to far red light	2.06E-04
18	GO:0000023: maltose metabolic process	2.27E-04
19	GO:0009765: photosynthesis, light harvesting	2.59E-04
20	GO:0006546: glycine catabolic process	2.59E-04
21	GO:0006364: rRNA processing	3.99E-04
22	GO:0006636: unsaturated fatty acid biosynthetic process	4.38E-04
23	GO:0018298: protein-chromophore linkage	6.64E-04
24	GO:0010103: stomatal complex morphogenesis	7.52E-04
25	GO:0006733: oxidoreduction coenzyme metabolic process	7.95E-04
26	GO:0035304: regulation of protein dephosphorylation	8.44E-04
27	GO:0009695: jasmonic acid biosynthetic process	9.42E-04
28	GO:0019252: starch biosynthetic process	1.04E-03
29	GO:0009595: detection of biotic stimulus	1.18E-03
30	GO:0009117: nucleotide metabolic process	1.18E-03
31	GO:0019216: regulation of lipid metabolic process	1.18E-03
32	GO:0009902: chloroplast relocation	1.39E-03
33	GO:0043900: regulation of multi-organism process	1.59E-03
34	GO:0019748: secondary metabolic process	1.59E-03
35	GO:0006526: arginine biosynthetic process	1.59E-03
36	GO:0070084: protein initiator methionine removal	1.59E-03
37	GO:0006796: phosphate-containing compound metabolic process	1.59E-03
38	GO:0000096: sulfur amino acid metabolic process	1.59E-03
39	GO:0006569: tryptophan catabolic process	1.59E-03
40	GO:0060416: response to growth hormone	1.59E-03
41	GO:0009772: photosynthetic electron transport in photosystem II	1.59E-03
42	GO:0006561: proline biosynthetic process	2.03E-03
43	GO:0019761: glucosinolate biosynthetic process	2.06E-03
44	GO:0045454: cell redox homeostasis	2.28E-03
45	GO:0009704: de-etiolation	2.50E-03
46	GO:0009987: cellular process	2.50E-03
47	GO:0010206: photosystem II repair	2.50E-03
48	GO:0034660: ncRNA metabolic process	2.50E-03
49	GO:0006801: superoxide metabolic process	2.50E-03
50	GO:0009658: chloroplast organization	2.85E-03
51	GO:0010310: regulation of hydrogen peroxide metabolic process	3.02E-03
52	GO:0009744: response to sucrose	3.23E-03
53	GO:0008652: cellular amino acid biosynthetic process	3.85E-03
54	GO:0009624: response to nematode	3.85E-03
55	GO:0009684: indoleacetic acid biosynthetic process	4.19E-03
56	GO:0005983: starch catabolic process	4.19E-03
57	GO:0016556: mRNA modification	4.82E-03
58	GO:0006006: glucose metabolic process	4.82E-03
59	GO:0048527: lateral root development	4.82E-03
60	GO:0009697: salicylic acid biosynthetic process	4.82E-03
61	GO:0006814: sodium ion transport	4.82E-03
62	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	5.46E-03
63	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	5.46E-03
64	GO:0031408: oxylipin biosynthetic process	6.87E-03
65	GO:0042793: transcription from plastid promoter	6.87E-03
66	GO:0010027: thylakoid membrane organization	7.79E-03
67	GO:0009749: response to glucose	9.19E-03
68	GO:0010155: regulation of proton transport	1.00E-02
69	GO:0010193: response to ozone	1.09E-02
70	GO:0080167: response to karrikin	1.09E-02
71	GO:0006612: protein targeting to membrane	1.09E-02
72	GO:0010200: response to chitin	1.09E-02
73	GO:0010363: regulation of plant-type hypersensitive response	1.17E-02
74	GO:0009867: jasmonic acid mediated signaling pathway	1.26E-02
75	GO:0031348: negative regulation of defense response	1.26E-02
76	GO:0006096: glycolytic process	1.55E-02
77	GO:0000165: MAPK cascade	1.65E-02
78	GO:0000413: protein peptidyl-prolyl isomerization	1.65E-02
79	GO:0009409: response to cold	1.91E-02
80	GO:0006662: glycerol ether metabolic process	1.96E-02
81	GO:0019344: cysteine biosynthetic process	2.07E-02
82	GO:0016117: carotenoid biosynthetic process	2.07E-02
83	GO:0016311: dephosphorylation	2.89E-02
84	GO:0006812: cation transport	3.40E-02
85	GO:0030001: metal ion transport	3.67E-02
86	GO:0045893: positive regulation of transcription, DNA-templated	4.81E-02
87	GO:0042742: defense response to bacterium	4.92E-02
88	GO:0050832: defense response to fungus	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0050308: sugar-phosphatase activity	0.00E+00
3	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
4	GO:0003991: acetylglutamate kinase activity	0.00E+00
5	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
6	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
7	GO:0016532: superoxide dismutase copper chaperone activity	0.00E+00
8	GO:0016168: chlorophyll binding	2.50E-05
9	GO:0004750: ribulose-phosphate 3-epimerase activity	1.93E-04
10	GO:0004618: phosphoglycerate kinase activity	1.93E-04
11	GO:0019203: carbohydrate phosphatase activity	1.93E-04
12	GO:0004042: acetyl-CoA:L-glutamate N-acetyltransferase activity	4.65E-04
13	GO:0004349: glutamate 5-kinase activity	4.65E-04
14	GO:0015035: protein disulfide oxidoreductase activity	6.99E-04
15	GO:2001070: starch binding	1.18E-03
16	GO:0004332: fructose-bisphosphate aldolase activity	1.18E-03
17	GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives	1.59E-03
18	GO:0070006: metalloaminopeptidase activity	1.59E-03
19	GO:0008235: metalloexopeptidase activity	2.03E-03
20	GO:0004784: superoxide dismutase activity	3.02E-03
21	GO:0004427: inorganic diphosphatase activity	3.59E-03
22	GO:0004177: aminopeptidase activity	4.19E-03
23	GO:0003690: double-stranded DNA binding	5.46E-03
24	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.46E-03
25	GO:0015297: antiporter activity	1.17E-02
26	GO:0005507: copper ion binding	1.44E-02
27	GO:0051539: 4 iron, 4 sulfur cluster binding	1.75E-02
28	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.85E-02
29	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.96E-02
30	GO:0009055: electron carrier activity	2.30E-02
31	GO:0005198: structural molecule activity	2.41E-02
32	GO:0004364: glutathione transferase activity	2.53E-02
33	GO:0016791: phosphatase activity	2.77E-02
34	GO:0050661: NADP binding	3.14E-02
35	GO:0005215: transporter activity	4.59E-02
36	GO:0051287: NAD binding	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	9.85E-16
2	GO:0009579: thylakoid	2.27E-11
3	GO:0009535: chloroplast thylakoid membrane	1.11E-09
4	GO:0009941: chloroplast envelope	2.40E-09
5	GO:0009522: photosystem I	7.87E-07
6	GO:0009523: photosystem II	3.50E-06
7	GO:0031977: thylakoid lumen	7.88E-06
8	GO:0009538: photosystem I reaction center	1.40E-05
9	GO:0010287: plastoglobule	2.23E-05
10	GO:0009534: chloroplast thylakoid	2.23E-05
11	GO:0030093: chloroplast photosystem I	1.93E-04
12	GO:0009570: chloroplast stroma	7.38E-04
13	GO:0009508: plastid chromosome	1.59E-03
14	GO:0019898: extrinsic component of membrane	2.03E-03
15	GO:0010319: stromule	2.20E-03
16	GO:0009654: photosystem II oxygen evolving complex	2.50E-03
17	GO:0009295: nucleoid	5.46E-03
18	GO:0009543: chloroplast thylakoid lumen	6.87E-03
19	GO:0048046: apoplast	2.27E-02