co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G006006

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048564: photosystem I assembly	0.00E+00
2	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
3	GO:0043953: protein transport by the Tat complex	0.00E+00
4	GO:0046506: sulfolipid biosynthetic process	0.00E+00
5	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
6	GO:0042780: tRNA 3'-end processing	0.00E+00
7	GO:1900865: chloroplast RNA modification	0.00E+00
8	GO:0043686: co-translational protein modification	0.00E+00
9	GO:0009306: protein secretion	1.74E-08
10	GO:0009658: chloroplast organization	4.14E-07
11	GO:0006457: protein folding	2.21E-06
12	GO:0010027: thylakoid membrane organization	8.65E-06
13	GO:0006364: rRNA processing	8.71E-06
14	GO:0006782: protoporphyrinogen IX biosynthetic process	6.64E-05
15	GO:0006399: tRNA metabolic process	3.84E-04
16	GO:0018160: peptidyl-pyrromethane cofactor linkage	4.80E-04
17	GO:0032543: mitochondrial translation	4.80E-04
18	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	4.80E-04
19	GO:0006429: leucyl-tRNA aminoacylation	4.80E-04
20	GO:0006591: ornithine metabolic process	4.80E-04
21	GO:0009959: negative gravitropism	4.80E-04
22	GO:0009407: toxin catabolic process	6.43E-04
23	GO:0016556: mRNA modification	8.00E-04
24	GO:0006779: porphyrin-containing compound biosynthetic process	9.74E-04
25	GO:1901671: positive regulation of superoxide dismutase activity	1.12E-03
26	GO:0030308: negative regulation of cell growth	1.12E-03
27	GO:0009642: response to light intensity	1.12E-03
28	GO:0010380: regulation of chlorophyll biosynthetic process	1.12E-03
29	GO:0045036: protein targeting to chloroplast	1.17E-03
30	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.28E-03
31	GO:0051607: defense response to virus	1.37E-03
32	GO:0016075: rRNA catabolic process	1.88E-03
33	GO:0009247: glycolipid biosynthetic process	1.88E-03
34	GO:0019760: glucosinolate metabolic process	1.88E-03
35	GO:0000304: response to singlet oxygen	1.88E-03
36	GO:0006450: regulation of translational fidelity	1.88E-03
37	GO:0006733: oxidoreduction coenzyme metabolic process	1.88E-03
38	GO:0051085: chaperone mediated protein folding requiring cofactor	1.88E-03
39	GO:0010731: protein glutathionylation	1.88E-03
40	GO:0015995: chlorophyll biosynthetic process	2.03E-03
41	GO:0044267: cellular protein metabolic process	2.35E-03
42	GO:0010267: production of ta-siRNAs involved in RNA interference	2.35E-03
43	GO:0035196: production of miRNAs involved in gene silencing by miRNA	2.35E-03
44	GO:0006165: nucleoside diphosphate phosphorylation	2.72E-03
45	GO:0006228: UTP biosynthetic process	2.72E-03
46	GO:0009117: nucleotide metabolic process	2.72E-03
47	GO:0019375: galactolipid biosynthetic process	2.72E-03
48	GO:0006183: GTP biosynthetic process	2.72E-03
49	GO:0006241: CTP biosynthetic process	2.72E-03
50	GO:0045038: protein import into chloroplast thylakoid membrane	2.72E-03
51	GO:0000373: Group II intron splicing	2.72E-03
52	GO:0042026: protein refolding	2.72E-03
53	GO:0010207: photosystem II assembly	3.20E-03
54	GO:0019748: secondary metabolic process	3.72E-03
55	GO:0010468: regulation of gene expression	3.72E-03
56	GO:0045893: positive regulation of transcription, DNA-templated	3.83E-03
57	GO:0006396: RNA processing	4.05E-03
58	GO:0006749: glutathione metabolic process	4.81E-03
59	GO:0009902: chloroplast relocation	4.86E-03
60	GO:0019252: starch biosynthetic process	5.27E-03
61	GO:0009735: response to cytokinin	5.75E-03
62	GO:0034660: ncRNA metabolic process	5.98E-03
63	GO:0009106: lipoate metabolic process	5.98E-03
64	GO:0006766: vitamin metabolic process	5.98E-03
65	GO:0009411: response to UV	5.98E-03
66	GO:0009108: coenzyme biosynthetic process	5.98E-03
67	GO:0010583: response to cyclopentenone	5.98E-03
68	GO:0033014: tetrapyrrole biosynthetic process	5.98E-03
69	GO:0006189: 'de novo' IMP biosynthetic process	5.98E-03
70	GO:0009073: aromatic amino acid family biosynthetic process	6.23E-03
71	GO:0051604: protein maturation	7.27E-03
72	GO:0016226: iron-sulfur cluster assembly	8.38E-03
73	GO:0009585: red, far-red light phototransduction	8.62E-03
74	GO:0000023: maltose metabolic process	9.58E-03
75	GO:0009723: response to ethylene	1.09E-02
76	GO:0006546: glycine catabolic process	1.32E-02
77	GO:0006655: phosphatidylglycerol biosynthetic process	1.66E-02
78	GO:0031408: oxylipin biosynthetic process	1.66E-02
79	GO:0042793: transcription from plastid promoter	1.66E-02
80	GO:0015031: protein transport	1.83E-02
81	GO:0008299: isoprenoid biosynthetic process	1.85E-02
82	GO:0006636: unsaturated fatty acid biosynthetic process	1.85E-02
83	GO:0009630: gravitropism	2.04E-02
84	GO:0042545: cell wall modification	2.04E-02
85	GO:0019684: photosynthesis, light reaction	2.23E-02
86	GO:0030154: cell differentiation	2.23E-02
87	GO:0016036: cellular response to phosphate starvation	2.44E-02
88	GO:0008219: cell death	2.44E-02
89	GO:0009627: systemic acquired resistance	2.65E-02
90	GO:0010103: stomatal complex morphogenesis	2.65E-02
91	GO:0009416: response to light stimulus	2.77E-02
92	GO:0035304: regulation of protein dephosphorylation	2.86E-02
93	GO:0009695: jasmonic acid biosynthetic process	3.08E-02
94	GO:0006869: lipid transport	3.08E-02
95	GO:0009853: photorespiration	3.79E-02
96	GO:0006626: protein targeting to mitochondrion	4.03E-02
97	GO:0006520: cellular amino acid metabolic process	4.03E-02
98	GO:0006184: obsolete GTP catabolic process	4.69E-02
99	GO:0009220: pyrimidine ribonucleotide biosynthetic process	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
2	GO:0042586: peptide deformylase activity	0.00E+00
3	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
4	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
5	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
6	GO:0004853: uroporphyrinogen decarboxylase activity	8.23E-06
7	GO:0008565: protein transporter activity	1.52E-05
8	GO:0004525: ribonuclease III activity	2.80E-04
9	GO:0004585: ornithine carbamoyltransferase activity	4.80E-04
10	GO:0008146: sulfotransferase activity	4.80E-04
11	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	4.80E-04
12	GO:0004418: hydroxymethylbilane synthase activity	4.80E-04
13	GO:0004823: leucine-tRNA ligase activity	4.80E-04
14	GO:0045174: glutathione dehydrogenase (ascorbate) activity	4.80E-04
15	GO:0004362: glutathione-disulfide reductase activity	4.80E-04
16	GO:0005496: steroid binding	1.12E-03
17	GO:0016630: protochlorophyllide reductase activity	1.12E-03
18	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.12E-03
19	GO:0051082: unfolded protein binding	1.67E-03
20	GO:0016831: carboxy-lyase activity	1.84E-03
21	GO:0016743: carboxyl- or carbamoyltransferase activity	1.88E-03
22	GO:0000774: adenyl-nucleotide exchange factor activity	1.88E-03
23	GO:0003959: NADPH dehydrogenase activity	1.88E-03
24	GO:0004765: shikimate kinase activity	2.72E-03
25	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	2.72E-03
26	GO:0004550: nucleoside diphosphate kinase activity	2.72E-03
27	GO:0070569: uridylyltransferase activity	2.72E-03
28	GO:0008173: RNA methyltransferase activity	4.81E-03
29	GO:0016817: hydrolase activity, acting on acid anhydrides	4.81E-03
30	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	5.98E-03
31	GO:0043022: ribosome binding	7.27E-03
32	GO:0051087: chaperone binding	7.27E-03
33	GO:0046914: transition metal ion binding	1.16E-02
34	GO:0005507: copper ion binding	2.11E-02
35	GO:0004252: serine-type endopeptidase activity	2.77E-02
36	GO:0000166: nucleotide binding	3.31E-02
37	GO:0005525: GTP binding	3.51E-02
38	GO:0004222: metalloendopeptidase activity	3.55E-02
39	GO:0016597: amino acid binding	3.79E-02

Rank	GO Term	Adjusted P value
1	GO:0042646: plastid nucleoid	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	1.52E-13
4	GO:0009941: chloroplast envelope	1.45E-08
5	GO:0009570: chloroplast stroma	1.99E-08
6	GO:0009535: chloroplast thylakoid membrane	9.65E-08
7	GO:0009579: thylakoid	1.61E-04
8	GO:0009532: plastid stroma	3.84E-04
9	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	4.80E-04
10	GO:0009526: plastid envelope	4.80E-04
11	GO:0009840: chloroplastic endopeptidase Clp complex	3.72E-03
12	GO:0019898: extrinsic component of membrane	4.81E-03
13	GO:0005759: mitochondrial matrix	4.86E-03
14	GO:0009654: photosystem II oxygen evolving complex	5.98E-03
15	GO:0031977: thylakoid lumen	8.38E-03
16	GO:0009534: chloroplast thylakoid	1.37E-02
17	GO:0009543: chloroplast thylakoid lumen	1.66E-02
18	GO:0009536: plastid	1.83E-02
19	GO:0009706: chloroplast inner membrane	3.55E-02
20	GO:0048046: apoplast	3.57E-02
21	GO:0005802: trans-Golgi network	3.79E-02
22	GO:0005739: mitochondrion	4.52E-02
23	GO:0009523: photosystem II	4.54E-02