Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G005980

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031118: rRNA pseudouridine synthesis0.00E+00
2GO:0006696: ergosterol biosynthetic process0.00E+00
3GO:0009909: regulation of flower development4.16E-06
4GO:0008283: cell proliferation3.99E-05
5GO:0048574: long-day photoperiodism, flowering6.21E-05
6GO:0031048: chromatin silencing by small RNA7.05E-05
7GO:0034968: histone lysine methylation1.16E-04
8GO:0006346: methylation-dependent chromatin silencing1.97E-04
9GO:0006334: nucleosome assembly2.76E-04
10GO:0010638: positive regulation of organelle organization2.82E-04
11GO:0048235: pollen sperm cell differentiation2.82E-04
12GO:0007094: mitotic spindle assembly checkpoint2.82E-04
13GO:0001510: RNA methylation3.29E-04
14GO:0033044: regulation of chromosome organization5.78E-04
15GO:0051567: histone H3-K9 methylation6.12E-04
16GO:0009640: photomorphogenesis6.52E-04
17GO:0006306: DNA methylation6.95E-04
18GO:0010050: vegetative phase change7.50E-04
19GO:0007267: cell-cell signaling7.50E-04
20GO:0010073: meristem maintenance1.14E-03
21GO:0010311: lateral root formation1.14E-03
22GO:0016572: histone phosphorylation1.34E-03
23GO:0006338: chromatin remodeling1.56E-03
24GO:0006312: mitotic recombination1.78E-03
25GO:0009616: virus induced gene silencing1.78E-03
26GO:0048453: sepal formation1.78E-03
27GO:0019915: lipid storage2.01E-03
28GO:0048451: petal formation2.01E-03
29GO:0009165: nucleotide biosynthetic process2.24E-03
30GO:0010389: regulation of G2/M transition of mitotic cell cycle2.24E-03
31GO:0008033: tRNA processing2.49E-03
32GO:0010162: seed dormancy process2.74E-03
33GO:0009855: determination of bilateral symmetry2.74E-03
34GO:0010014: meristem initiation2.74E-03
35GO:0007131: reciprocal meiotic recombination2.74E-03
36GO:0050826: response to freezing3.02E-03
37GO:0006281: DNA repair3.18E-03
38GO:0016567: protein ubiquitination3.18E-03
39GO:0030154: cell differentiation3.31E-03
40GO:0030036: actin cytoskeleton organization3.31E-03
41GO:0035196: production of miRNAs involved in gene silencing by miRNA3.61E-03
42GO:0010267: production of ta-siRNAs involved in RNA interference3.61E-03
43GO:0010182: sugar mediated signaling pathway4.23E-03
44GO:0010090: trichome morphogenesis4.23E-03
45GO:0006869: lipid transport4.56E-03
46GO:0009845: seed germination5.20E-03
47GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation5.54E-03
48GO:0006275: regulation of DNA replication5.90E-03
49GO:0000413: protein peptidyl-prolyl isomerization5.90E-03
50GO:0006270: DNA replication initiation6.25E-03
51GO:0009560: embryo sac egg cell differentiation6.25E-03
52GO:0000226: microtubule cytoskeleton organization6.25E-03
53GO:0009220: pyrimidine ribonucleotide biosynthetic process7.00E-03
54GO:0009086: methionine biosynthetic process7.39E-03
55GO:0000911: cytokinesis by cell plate formation8.98E-03
56GO:0006414: translational elongation1.07E-02
57GO:0000398: mRNA splicing, via spliceosome1.11E-02
58GO:0051301: cell division1.21E-02
59GO:0006952: defense response1.65E-02
60GO:0009414: response to water deprivation4.11E-02
RankGO TermAdjusted P value
1GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
2GO:0000247: C-8 sterol isomerase activity6.21E-05
3GO:0004809: tRNA (guanine-N2-)-methyltransferase activity1.59E-04
4GO:0030515: snoRNA binding4.22E-04
5GO:0003723: RNA binding1.59E-03
6GO:0005200: structural constituent of cytoskeleton3.92E-03
7GO:0046982: protein heterodimerization activity4.51E-03
8GO:0042393: histone binding4.87E-03
9GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.63E-03
10GO:0003746: translation elongation factor activity8.58E-03
11GO:0003779: actin binding1.11E-02
12GO:0008026: ATP-dependent helicase activity1.16E-02
13GO:0004721: phosphoprotein phosphatase activity1.49E-02
14GO:0004386: helicase activity2.08E-02
15GO:0004842: ubiquitin-protein transferase activity2.31E-02
16GO:0016853: isomerase activity3.89E-02
RankGO TermAdjusted P value
1GO:0000812: Swr1 complex0.00E+00
2GO:0005730: nucleolus6.58E-08
3GO:0035267: NuA4 histone acetyltransferase complex6.21E-05
4GO:0010369: chromocenter6.21E-05
5GO:0000776: kinetochore4.22E-04
6GO:0005732: small nucleolar ribonucleoprotein complex5.78E-04
7GO:0031011: Ino80 complex7.50E-04
8GO:0000151: ubiquitin ligase complex2.01E-03
9GO:0000786: nucleosome2.72E-03
10GO:0005694: chromosome3.81E-03
11GO:0019013: viral nucleocapsid4.23E-03
12GO:0005618: cell wall1.27E-02
13GO:0005634: nucleus1.68E-02
14GO:0009506: plasmodesma1.92E-02
15GO:0005774: vacuolar membrane2.50E-02
16GO:0030529: intracellular ribonucleoprotein complex2.74E-02
17GO:0022625: cytosolic large ribosomal subunit4.63E-02