co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G005938

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045038: protein import into chloroplast thylakoid membrane	0.00E+00
2	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
3	GO:1900865: chloroplast RNA modification	0.00E+00
4	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
5	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
6	GO:0043043: peptide biosynthetic process	0.00E+00
7	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
8	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
9	GO:0042407: cristae formation	0.00E+00
10	GO:0042821: pyridoxal biosynthetic process	0.00E+00
11	GO:0090391: granum assembly	0.00E+00
12	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
13	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
14	GO:0043953: protein transport by the Tat complex	0.00E+00
15	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
16	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
17	GO:0032543: mitochondrial translation	0.00E+00
18	GO:0046506: sulfolipid biosynthetic process	0.00E+00
19	GO:0090342: regulation of cell aging	0.00E+00
20	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
21	GO:0032544: plastid translation	0.00E+00
22	GO:1901259: chloroplast rRNA processing	0.00E+00
23	GO:0010028: xanthophyll cycle	0.00E+00
24	GO:0010027: thylakoid membrane organization	4.28E-29
25	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.65E-27
26	GO:0009658: chloroplast organization	3.93E-16
27	GO:0009902: chloroplast relocation	2.44E-14
28	GO:0006364: rRNA processing	1.15E-13
29	GO:0042793: transcription from plastid promoter	1.91E-13
30	GO:0010207: photosystem II assembly	2.51E-12
31	GO:0045036: protein targeting to chloroplast	4.83E-12
32	GO:0006655: phosphatidylglycerol biosynthetic process	1.40E-11
33	GO:0016226: iron-sulfur cluster assembly	3.95E-11
34	GO:0015995: chlorophyll biosynthetic process	5.61E-11
35	GO:0045893: positive regulation of transcription, DNA-templated	1.87E-08
36	GO:0035304: regulation of protein dephosphorylation	3.58E-08
37	GO:0006098: pentose-phosphate shunt	2.81E-07
38	GO:0006412: translation	7.67E-07
39	GO:0009073: aromatic amino acid family biosynthetic process	9.11E-07
40	GO:0019748: secondary metabolic process	1.32E-06
41	GO:0006418: tRNA aminoacylation for protein translation	6.55E-06
42	GO:0006733: oxidoreduction coenzyme metabolic process	7.17E-06
43	GO:0006546: glycine catabolic process	8.49E-06
44	GO:0006779: porphyrin-containing compound biosynthetic process	8.49E-06
45	GO:0006766: vitamin metabolic process	1.05E-05
46	GO:0009106: lipoate metabolic process	1.05E-05
47	GO:0009108: coenzyme biosynthetic process	1.05E-05
48	GO:0009117: nucleotide metabolic process	3.12E-05
49	GO:0045037: protein import into chloroplast stroma	3.12E-05
50	GO:0006353: DNA-templated transcription, termination	3.12E-05
51	GO:0006636: unsaturated fatty acid biosynthetic process	3.29E-05
52	GO:0030154: cell differentiation	6.67E-05
53	GO:0000096: sulfur amino acid metabolic process	8.11E-05
54	GO:0019344: cysteine biosynthetic process	1.40E-04
55	GO:0016117: carotenoid biosynthetic process	1.40E-04
56	GO:0009773: photosynthetic electron transport in photosystem I	1.57E-04
57	GO:0042372: phylloquinone biosynthetic process	1.71E-04
58	GO:0044272: sulfur compound biosynthetic process	1.71E-04
59	GO:1901671: positive regulation of superoxide dismutase activity	1.71E-04
60	GO:0009695: jasmonic acid biosynthetic process	2.00E-04
61	GO:0006457: protein folding	3.31E-04
62	GO:0048481: plant ovule development	3.38E-04
63	GO:0006399: tRNA metabolic process	4.45E-04
64	GO:0009247: glycolipid biosynthetic process	5.14E-04
65	GO:0019684: photosynthesis, light reaction	6.44E-04
66	GO:0009793: embryo development ending in seed dormancy	9.73E-04
67	GO:0010103: stomatal complex morphogenesis	9.83E-04
68	GO:0006782: protoporphyrinogen IX biosynthetic process	1.03E-03
69	GO:0019216: regulation of lipid metabolic process	1.03E-03
70	GO:0019375: galactolipid biosynthetic process	1.03E-03
71	GO:0006200: obsolete ATP catabolic process	1.10E-03
72	GO:0016556: mRNA modification	1.22E-03
73	GO:0006354: DNA-templated transcription, elongation	1.22E-03
74	GO:0009308: amine metabolic process	1.71E-03
75	GO:0006569: tryptophan catabolic process	1.71E-03
76	GO:0031408: oxylipin biosynthetic process	2.44E-03
77	GO:0009306: protein secretion	2.53E-03
78	GO:0006430: lysyl-tRNA aminoacylation	2.66E-03
79	GO:0009443: pyridoxal 5'-phosphate salvage	2.66E-03
80	GO:0006429: leucyl-tRNA aminoacylation	2.66E-03
81	GO:0008361: regulation of cell size	2.66E-03
82	GO:0006434: seryl-tRNA aminoacylation	2.66E-03
83	GO:0016050: vesicle organization	2.66E-03
84	GO:0006788: heme oxidation	2.66E-03
85	GO:0006573: valine metabolic process	2.66E-03
86	GO:0006433: prolyl-tRNA aminoacylation	2.66E-03
87	GO:0006423: cysteinyl-tRNA aminoacylation	2.66E-03
88	GO:0009069: serine family amino acid metabolic process	2.66E-03
89	GO:0071722: detoxification of arsenic-containing substance	2.66E-03
90	GO:0006184: obsolete GTP catabolic process	3.12E-03
91	GO:0009735: response to cytokinin	3.41E-03
92	GO:0033014: tetrapyrrole biosynthetic process	3.58E-03
93	GO:0034660: ncRNA metabolic process	3.58E-03
94	GO:0010228: vegetative to reproductive phase transition of meristem	3.68E-03
95	GO:0009965: leaf morphogenesis	4.89E-03
96	GO:0009409: response to cold	5.77E-03
97	GO:0051555: flavonol biosynthetic process	6.18E-03
98	GO:0010109: regulation of photosynthesis	6.18E-03
99	GO:0010024: phytochromobilin biosynthetic process	6.18E-03
100	GO:0010192: mucilage biosynthetic process	6.18E-03
101	GO:0048653: anther development	6.18E-03
102	GO:0010380: regulation of chlorophyll biosynthetic process	6.18E-03
103	GO:0009225: nucleotide-sugar metabolic process	6.18E-03
104	GO:0019464: glycine decarboxylation via glycine cleavage system	6.18E-03
105	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.18E-03
106	GO:0006432: phenylalanyl-tRNA aminoacylation	6.18E-03
107	GO:0010236: plastoquinone biosynthetic process	6.18E-03
108	GO:0010253: UDP-rhamnose biosynthetic process	6.18E-03
109	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	6.26E-03
110	GO:0009072: aromatic amino acid family metabolic process	6.26E-03
111	GO:0000023: maltose metabolic process	7.63E-03
112	GO:0009407: toxin catabolic process	7.93E-03
113	GO:0009684: indoleacetic acid biosynthetic process	7.93E-03
114	GO:0042742: defense response to bacterium	9.43E-03
115	GO:0006450: regulation of translational fidelity	1.06E-02
116	GO:0007186: G-protein coupled receptor signaling pathway	1.06E-02
117	GO:0010038: response to metal ion	1.06E-02
118	GO:0051085: chaperone mediated protein folding requiring cofactor	1.06E-02
119	GO:0010731: protein glutathionylation	1.06E-02
120	GO:0045226: extracellular polysaccharide biosynthetic process	1.06E-02
121	GO:0016075: rRNA catabolic process	1.06E-02
122	GO:0043067: regulation of programmed cell death	1.06E-02
123	GO:0009231: riboflavin biosynthetic process	1.06E-02
124	GO:0000304: response to singlet oxygen	1.06E-02
125	GO:0006241: CTP biosynthetic process	1.57E-02
126	GO:0010214: seed coat development	1.57E-02
127	GO:0007389: pattern specification process	1.57E-02
128	GO:0030259: lipid glycosylation	1.57E-02
129	GO:0042026: protein refolding	1.57E-02
130	GO:0071704: organic substance metabolic process	1.57E-02
131	GO:0006165: nucleoside diphosphate phosphorylation	1.57E-02
132	GO:0006228: UTP biosynthetic process	1.57E-02
133	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.57E-02
134	GO:0051205: protein insertion into membrane	1.57E-02
135	GO:0006183: GTP biosynthetic process	1.57E-02
136	GO:0051607: defense response to virus	1.67E-02
137	GO:0043085: positive regulation of catalytic activity	1.69E-02
138	GO:0008299: isoprenoid biosynthetic process	1.95E-02
139	GO:0015994: chlorophyll metabolic process	2.15E-02
140	GO:0070084: protein initiator methionine removal	2.15E-02
141	GO:0010315: auxin efflux	2.15E-02
142	GO:0060416: response to growth hormone	2.15E-02
143	GO:0009772: photosynthetic electron transport in photosystem II	2.15E-02
144	GO:0009813: flavonoid biosynthetic process	2.15E-02
145	GO:0010468: regulation of gene expression	2.15E-02
146	GO:0009790: embryo development	2.20E-02
147	GO:0019761: glucosinolate biosynthetic process	2.20E-02
148	GO:0042545: cell wall modification	2.24E-02
149	GO:0015979: photosynthesis	2.25E-02
150	GO:0006631: fatty acid metabolic process	2.56E-02
151	GO:0048229: gametophyte development	2.80E-02
152	GO:0007005: mitochondrion organization	2.80E-02
153	GO:0006749: glutathione metabolic process	2.80E-02
154	GO:0031347: regulation of defense response	2.80E-02
155	GO:0009913: epidermal cell differentiation	2.80E-02
156	GO:0035196: production of miRNAs involved in gene silencing by miRNA	2.91E-02
157	GO:0010267: production of ta-siRNAs involved in RNA interference	2.91E-02
158	GO:0010155: regulation of proton transport	2.91E-02
159	GO:0009627: systemic acquired resistance	3.27E-02
160	GO:0030003: cellular cation homeostasis	3.51E-02
161	GO:0009704: de-etiolation	3.51E-02
162	GO:0009987: cellular process	3.51E-02
163	GO:0010583: response to cyclopentenone	3.51E-02
164	GO:0009411: response to UV	3.51E-02
165	GO:0006189: 'de novo' IMP biosynthetic process	3.51E-02
166	GO:0010206: photosystem II repair	3.51E-02
167	GO:0009926: auxin polar transport	3.51E-02
168	GO:0019538: protein metabolic process	3.51E-02
169	GO:0010205: photoinhibition	3.51E-02
170	GO:0032880: regulation of protein localization	3.51E-02
171	GO:0009814: defense response, incompatible interaction	3.51E-02
172	GO:0045454: cell redox homeostasis	3.65E-02
173	GO:0046777: protein autophosphorylation	3.66E-02
174	GO:0006508: proteolysis	3.71E-02
175	GO:0006414: translational elongation	3.93E-02
176	GO:0019252: starch biosynthetic process	4.05E-02
177	GO:0051604: protein maturation	4.28E-02
178	GO:0015693: magnesium ion transport	4.28E-02
179	GO:0043039: tRNA aminoacylation	4.28E-02
180	GO:0030245: cellulose catabolic process	4.28E-02
181	GO:0008652: cellular amino acid biosynthetic process	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
3	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
4	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
5	GO:0003919: FMN adenylyltransferase activity	0.00E+00
6	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
7	GO:0005048: signal sequence binding	0.00E+00
8	GO:0005504: fatty acid binding	0.00E+00
9	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
10	GO:0046408: chlorophyll synthetase activity	0.00E+00
11	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
12	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
13	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
14	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
15	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
16	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
17	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
18	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
19	GO:0004812: aminoacyl-tRNA ligase activity	1.04E-05
20	GO:0003735: structural constituent of ribosome	1.57E-05
21	GO:0004252: serine-type endopeptidase activity	3.71E-05
22	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.71E-04
23	GO:0004853: uroporphyrinogen decarboxylase activity	1.71E-04
24	GO:0000774: adenyl-nucleotide exchange factor activity	5.14E-04
25	GO:0004765: shikimate kinase activity	1.03E-03
26	GO:0016209: antioxidant activity	1.03E-03
27	GO:0004659: prenyltransferase activity	1.03E-03
28	GO:0019843: rRNA binding	2.26E-03
29	GO:0016851: magnesium chelatase activity	2.66E-03
30	GO:0004823: leucine-tRNA ligase activity	2.66E-03
31	GO:0045174: glutathione dehydrogenase (ascorbate) activity	2.66E-03
32	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	2.66E-03
33	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	2.66E-03
34	GO:0004831: tyrosine-tRNA ligase activity	2.66E-03
35	GO:0035250: UDP-galactosyltransferase activity	2.66E-03
36	GO:0010280: UDP-L-rhamnose synthase activity	2.66E-03
37	GO:0004362: glutathione-disulfide reductase activity	2.66E-03
38	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	2.66E-03
39	GO:0070402: NADPH binding	2.66E-03
40	GO:0008194: UDP-glycosyltransferase activity	2.66E-03
41	GO:0008146: sulfotransferase activity	2.66E-03
42	GO:0004817: cysteine-tRNA ligase activity	2.66E-03
43	GO:0050377: UDP-glucose 4,6-dehydratase activity	2.66E-03
44	GO:0004824: lysine-tRNA ligase activity	2.66E-03
45	GO:0034256: chlorophyll(ide) b reductase activity	2.66E-03
46	GO:0004827: proline-tRNA ligase activity	2.66E-03
47	GO:0004828: serine-tRNA ligase activity	2.66E-03
48	GO:0016887: ATPase activity	3.11E-03
49	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	3.58E-03
50	GO:0008236: serine-type peptidase activity	4.40E-03
51	GO:0051087: chaperone binding	4.83E-03
52	GO:0008312: 7S RNA binding	4.83E-03
53	GO:0004392: heme oxygenase (decyclizing) activity	6.18E-03
54	GO:0045430: chalcone isomerase activity	6.18E-03
55	GO:0051920: peroxiredoxin activity	6.18E-03
56	GO:0016630: protochlorophyllide reductase activity	6.18E-03
57	GO:0004826: phenylalanine-tRNA ligase activity	6.18E-03
58	GO:0004462: lactoylglutathione lyase activity	6.18E-03
59	GO:0045485: omega-6 fatty acid desaturase activity	6.18E-03
60	GO:0000049: tRNA binding	7.93E-03
61	GO:0031072: heat shock protein binding	7.98E-03
62	GO:0051082: unfolded protein binding	8.23E-03
63	GO:0046914: transition metal ion binding	9.80E-03
64	GO:0016872: intramolecular lyase activity	1.06E-02
65	GO:0003959: NADPH dehydrogenase activity	1.06E-02
66	GO:0032549: ribonucleoside binding	1.06E-02
67	GO:0008831: dTDP-4-dehydrorhamnose reductase activity	1.06E-02
68	GO:0008460: dTDP-glucose 4,6-dehydratase activity	1.06E-02
69	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	1.57E-02
70	GO:0004550: nucleoside diphosphate kinase activity	1.57E-02
71	GO:0003913: DNA photolyase activity	1.57E-02
72	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	1.57E-02
73	GO:0070569: uridylyltransferase activity	1.57E-02
74	GO:0048038: quinone binding	1.95E-02
75	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.15E-02
76	GO:0070006: metalloaminopeptidase activity	2.15E-02
77	GO:0016868: intramolecular transferase activity, phosphotransferases	2.15E-02
78	GO:0016987: sigma factor activity	2.15E-02
79	GO:0016831: carboxy-lyase activity	2.24E-02
80	GO:0008233: peptidase activity	2.29E-02
81	GO:0015035: protein disulfide oxidoreductase activity	2.62E-02
82	GO:0003746: translation elongation factor activity	2.63E-02
83	GO:0008235: metalloexopeptidase activity	2.80E-02
84	GO:0008173: RNA methyltransferase activity	2.80E-02
85	GO:0017111: nucleoside-triphosphatase activity	3.50E-02
86	GO:0008810: cellulase activity	3.51E-02
87	GO:0004525: ribonuclease III activity	3.51E-02
88	GO:0003924: GTPase activity	3.80E-02
89	GO:0005507: copper ion binding	3.96E-02
90	GO:0005525: GTP binding	4.01E-02
91	GO:0008565: protein transporter activity	4.07E-02
92	GO:0043022: ribosome binding	4.28E-02

Rank	GO Term	Adjusted P value
1	GO:0055035: plastid thylakoid membrane	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0080085: signal recognition particle, chloroplast targeting	0.00E+00
4	GO:0009507: chloroplast	5.31E-65
5	GO:0009570: chloroplast stroma	4.57E-49
6	GO:0009941: chloroplast envelope	2.62E-37
7	GO:0009535: chloroplast thylakoid membrane	4.64E-16
8	GO:0009579: thylakoid	1.81E-12
9	GO:0009534: chloroplast thylakoid	9.44E-10
10	GO:0009532: plastid stroma	7.22E-09
11	GO:0009840: chloroplastic endopeptidase Clp complex	7.36E-09
12	GO:0005840: ribosome	6.50E-08
13	GO:0009295: nucleoid	8.49E-06
14	GO:0030529: intracellular ribonucleoprotein complex	2.71E-04
15	GO:0009543: chloroplast thylakoid lumen	3.00E-04
16	GO:0009706: chloroplast inner membrane	3.12E-04
17	GO:0010319: stromule	1.18E-03
18	GO:0031977: thylakoid lumen	1.35E-03
19	GO:0009536: plastid	2.23E-03
20	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.53E-03
21	GO:0000311: plastid large ribosomal subunit	2.66E-03
22	GO:0009527: plastid outer membrane	2.66E-03
23	GO:0009526: plastid envelope	2.66E-03
24	GO:0005960: glycine cleavage complex	2.66E-03
25	GO:0044445: cytosolic part	2.66E-03
26	GO:0009528: plastid inner membrane	2.66E-03
27	GO:0048500: signal recognition particle	3.58E-03
28	GO:0009533: chloroplast stromal thylakoid	6.18E-03
29	GO:0055028: cortical microtubule	1.06E-02
30	GO:0005759: mitochondrial matrix	1.31E-02
31	GO:0009508: plastid chromosome	2.15E-02
32	GO:0015934: large ribosomal subunit	2.41E-02
33	GO:0031225: anchored component of membrane	2.80E-02
34	GO:0019898: extrinsic component of membrane	2.80E-02
35	GO:0009654: photosystem II oxygen evolving complex	3.51E-02
36	GO:0019013: viral nucleocapsid	3.66E-02
37	GO:0048046: apoplast	4.13E-02
38	GO:0005622: intracellular	4.78E-02