co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G004583

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900865: chloroplast RNA modification	0.00E+00
2	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
3	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
4	GO:0043043: peptide biosynthetic process	0.00E+00
5	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
6	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
7	GO:0042821: pyridoxal biosynthetic process	0.00E+00
8	GO:0042407: cristae formation	0.00E+00
9	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
10	GO:0043953: protein transport by the Tat complex	0.00E+00
11	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
12	GO:0032543: mitochondrial translation	0.00E+00
13	GO:0046506: sulfolipid biosynthetic process	0.00E+00
14	GO:1901259: chloroplast rRNA processing	0.00E+00
15	GO:0090342: regulation of cell aging	0.00E+00
16	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
17	GO:0010027: thylakoid membrane organization	2.62E-21
18	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	7.15E-16
19	GO:0006364: rRNA processing	7.92E-15
20	GO:0009658: chloroplast organization	4.81E-12
21	GO:0016226: iron-sulfur cluster assembly	3.57E-11
22	GO:0010207: photosystem II assembly	3.02E-10
23	GO:0009902: chloroplast relocation	1.25E-09
24	GO:0042793: transcription from plastid promoter	3.84E-09
25	GO:0015995: chlorophyll biosynthetic process	1.15E-08
26	GO:0045038: protein import into chloroplast thylakoid membrane	6.30E-08
27	GO:0045036: protein targeting to chloroplast	8.91E-08
28	GO:0006399: tRNA metabolic process	1.08E-07
29	GO:0045893: positive regulation of transcription, DNA-templated	1.56E-06
30	GO:0006779: porphyrin-containing compound biosynthetic process	1.88E-06
31	GO:0035304: regulation of protein dephosphorylation	2.39E-06
32	GO:0006655: phosphatidylglycerol biosynthetic process	5.02E-06
33	GO:0006418: tRNA aminoacylation for protein translation	9.48E-06
34	GO:0006098: pentose-phosphate shunt	1.11E-05
35	GO:0009073: aromatic amino acid family biosynthetic process	2.37E-05
36	GO:0009306: protein secretion	6.57E-05
37	GO:0048481: plant ovule development	7.91E-05
38	GO:0032544: plastid translation	8.58E-05
39	GO:0042372: phylloquinone biosynthetic process	8.58E-05
40	GO:0006636: unsaturated fatty acid biosynthetic process	1.37E-04
41	GO:0006733: oxidoreduction coenzyme metabolic process	2.72E-04
42	GO:0043067: regulation of programmed cell death	2.72E-04
43	GO:0000304: response to singlet oxygen	2.72E-04
44	GO:0010103: stomatal complex morphogenesis	3.66E-04
45	GO:0009773: photosynthetic electron transport in photosystem I	4.47E-04
46	GO:0016556: mRNA modification	5.43E-04
47	GO:0006782: protoporphyrinogen IX biosynthetic process	5.53E-04
48	GO:0010304: PSII associated light-harvesting complex II catabolic process	5.53E-04
49	GO:0009117: nucleotide metabolic process	5.53E-04
50	GO:0000023: maltose metabolic process	5.66E-04
51	GO:0006546: glycine catabolic process	7.14E-04
52	GO:0006184: obsolete GTP catabolic process	8.07E-04
53	GO:0006569: tryptophan catabolic process	9.34E-04
54	GO:0019748: secondary metabolic process	9.34E-04
55	GO:0019252: starch biosynthetic process	1.10E-03
56	GO:0010228: vegetative to reproductive phase transition of meristem	1.27E-03
57	GO:0006457: protein folding	1.51E-03
58	GO:0043085: positive regulation of catalytic activity	1.54E-03
59	GO:0006200: obsolete ATP catabolic process	1.54E-03
60	GO:0019344: cysteine biosynthetic process	1.75E-03
61	GO:0016117: carotenoid biosynthetic process	1.75E-03
62	GO:0008361: regulation of cell size	1.79E-03
63	GO:0006434: seryl-tRNA aminoacylation	1.79E-03
64	GO:0016050: vesicle organization	1.79E-03
65	GO:0006788: heme oxidation	1.79E-03
66	GO:0018160: peptidyl-pyrromethane cofactor linkage	1.79E-03
67	GO:0006433: prolyl-tRNA aminoacylation	1.79E-03
68	GO:0006423: cysteinyl-tRNA aminoacylation	1.79E-03
69	GO:0009069: serine family amino acid metabolic process	1.79E-03
70	GO:0071722: detoxification of arsenic-containing substance	1.79E-03
71	GO:0009443: pyridoxal 5'-phosphate salvage	1.79E-03
72	GO:0006429: leucyl-tRNA aminoacylation	1.79E-03
73	GO:0009793: embryo development ending in seed dormancy	1.85E-03
74	GO:0019761: glucosinolate biosynthetic process	1.97E-03
75	GO:0034660: ncRNA metabolic process	1.98E-03
76	GO:0009106: lipoate metabolic process	1.98E-03
77	GO:0006766: vitamin metabolic process	1.98E-03
78	GO:0009814: defense response, incompatible interaction	1.98E-03
79	GO:0009108: coenzyme biosynthetic process	1.98E-03
80	GO:0030154: cell differentiation	2.01E-03
81	GO:0019684: photosynthesis, light reaction	2.01E-03
82	GO:0006412: translation	2.22E-03
83	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.43E-03
84	GO:0010024: phytochromobilin biosynthetic process	4.07E-03
85	GO:0009688: abscisic acid biosynthetic process	4.07E-03
86	GO:0048653: anther development	4.07E-03
87	GO:0010380: regulation of chlorophyll biosynthetic process	4.07E-03
88	GO:1901671: positive regulation of superoxide dismutase activity	4.07E-03
89	GO:0019464: glycine decarboxylation via glycine cleavage system	4.07E-03
90	GO:0006432: phenylalanyl-tRNA aminoacylation	4.07E-03
91	GO:0010109: regulation of photosynthesis	4.07E-03
92	GO:0010236: plastoquinone biosynthetic process	4.07E-03
93	GO:0009684: indoleacetic acid biosynthetic process	4.34E-03
94	GO:0009407: toxin catabolic process	4.34E-03
95	GO:0006354: DNA-templated transcription, elongation	5.35E-03
96	GO:0009409: response to cold	6.83E-03
97	GO:0006450: regulation of translational fidelity	6.92E-03
98	GO:0007186: G-protein coupled receptor signaling pathway	6.92E-03
99	GO:0010038: response to metal ion	6.92E-03
100	GO:0051085: chaperone mediated protein folding requiring cofactor	6.92E-03
101	GO:0010731: protein glutathionylation	6.92E-03
102	GO:0016075: rRNA catabolic process	6.92E-03
103	GO:0009231: riboflavin biosynthetic process	6.92E-03
104	GO:0009247: glycolipid biosynthetic process	6.92E-03
105	GO:0019760: glucosinolate metabolic process	6.92E-03
106	GO:0009735: response to cytokinin	7.62E-03
107	GO:0015979: photosynthesis	7.97E-03
108	GO:0051607: defense response to virus	9.14E-03
109	GO:0042026: protein refolding	1.03E-02
110	GO:0071704: organic substance metabolic process	1.03E-02
111	GO:0006165: nucleoside diphosphate phosphorylation	1.03E-02
112	GO:0006228: UTP biosynthetic process	1.03E-02
113	GO:0051205: protein insertion into membrane	1.03E-02
114	GO:0045037: protein import into chloroplast stroma	1.03E-02
115	GO:0006353: DNA-templated transcription, termination	1.03E-02
116	GO:0019375: galactolipid biosynthetic process	1.03E-02
117	GO:0006183: GTP biosynthetic process	1.03E-02
118	GO:0006241: CTP biosynthetic process	1.03E-02
119	GO:0007389: pattern specification process	1.03E-02
120	GO:0000373: Group II intron splicing	1.03E-02
121	GO:0015996: chlorophyll catabolic process	1.06E-02
122	GO:0008299: isoprenoid biosynthetic process	1.06E-02
123	GO:0042545: cell wall modification	1.23E-02
124	GO:0000096: sulfur amino acid metabolic process	1.41E-02
125	GO:0060416: response to growth hormone	1.41E-02
126	GO:0009772: photosynthetic electron transport in photosystem II	1.41E-02
127	GO:0009813: flavonoid biosynthetic process	1.41E-02
128	GO:0009308: amine metabolic process	1.41E-02
129	GO:0042742: defense response to bacterium	1.55E-02
130	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.59E-02
131	GO:0010267: production of ta-siRNAs involved in RNA interference	1.59E-02
132	GO:0048229: gametophyte development	1.83E-02
133	GO:0007005: mitochondrion organization	1.83E-02
134	GO:0000105: histidine biosynthetic process	1.83E-02
135	GO:0006749: glutathione metabolic process	1.83E-02
136	GO:0009913: epidermal cell differentiation	1.83E-02
137	GO:0006414: translational elongation	1.86E-02
138	GO:0009695: jasmonic acid biosynthetic process	2.24E-02
139	GO:0009926: auxin polar transport	2.29E-02
140	GO:0030003: cellular cation homeostasis	2.29E-02
141	GO:0009704: de-etiolation	2.29E-02
142	GO:0009411: response to UV	2.29E-02
143	GO:0010583: response to cyclopentenone	2.29E-02
144	GO:0033014: tetrapyrrole biosynthetic process	2.29E-02
145	GO:0015693: magnesium ion transport	2.78E-02
146	GO:0043039: tRNA aminoacylation	2.78E-02
147	GO:0030245: cellulose catabolic process	2.78E-02
148	GO:0051604: protein maturation	2.78E-02
149	GO:0009965: leaf morphogenesis	3.01E-02
150	GO:0040007: growth	3.32E-02
151	GO:0010015: root morphogenesis	3.32E-02
152	GO:0045087: innate immune response	3.32E-02
153	GO:0009585: red, far-red light phototransduction	3.32E-02
154	GO:0009832: plant-type cell wall biogenesis	3.89E-02
155	GO:0009567: double fertilization forming a zygote and endosperm	4.48E-02
156	GO:0048527: lateral root development	4.48E-02
157	GO:0009697: salicylic acid biosynthetic process	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
2	GO:0003879: ATP phosphoribosyltransferase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
5	GO:0051743: red chlorophyll catabolite reductase activity	0.00E+00
6	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
7	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
8	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
9	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
10	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
11	GO:0003919: FMN adenylyltransferase activity	0.00E+00
12	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
13	GO:0005048: signal sequence binding	0.00E+00
14	GO:0005504: fatty acid binding	0.00E+00
15	GO:0004812: aminoacyl-tRNA ligase activity	1.43E-05
16	GO:0004853: uroporphyrinogen decarboxylase activity	8.58E-05
17	GO:0004765: shikimate kinase activity	5.53E-04
18	GO:0008236: serine-type peptidase activity	1.75E-03
19	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.79E-03
20	GO:0004831: tyrosine-tRNA ligase activity	1.79E-03
21	GO:0004362: glutathione-disulfide reductase activity	1.79E-03
22	GO:0070402: NADPH binding	1.79E-03
23	GO:0008146: sulfotransferase activity	1.79E-03
24	GO:0004817: cysteine-tRNA ligase activity	1.79E-03
25	GO:0034256: chlorophyll(ide) b reductase activity	1.79E-03
26	GO:0004827: proline-tRNA ligase activity	1.79E-03
27	GO:0004418: hydroxymethylbilane synthase activity	1.79E-03
28	GO:0016851: magnesium chelatase activity	1.79E-03
29	GO:0004823: leucine-tRNA ligase activity	1.79E-03
30	GO:0004828: serine-tRNA ligase activity	1.79E-03
31	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.79E-03
32	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.98E-03
33	GO:0051082: unfolded protein binding	2.47E-03
34	GO:0008312: 7S RNA binding	2.63E-03
35	GO:0031072: heat shock protein binding	3.69E-03
36	GO:0008565: protein transporter activity	3.69E-03
37	GO:0016887: ATPase activity	3.82E-03
38	GO:0045430: chalcone isomerase activity	4.07E-03
39	GO:0051920: peroxiredoxin activity	4.07E-03
40	GO:0016630: protochlorophyllide reductase activity	4.07E-03
41	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	4.07E-03
42	GO:0004826: phenylalanine-tRNA ligase activity	4.07E-03
43	GO:0004392: heme oxygenase (decyclizing) activity	4.07E-03
44	GO:0004252: serine-type endopeptidase activity	4.12E-03
45	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.34E-03
46	GO:0000049: tRNA binding	4.34E-03
47	GO:0000774: adenyl-nucleotide exchange factor activity	6.92E-03
48	GO:0016872: intramolecular lyase activity	6.92E-03
49	GO:0003959: NADPH dehydrogenase activity	6.92E-03
50	GO:0005525: GTP binding	9.36E-03
51	GO:0003735: structural constituent of ribosome	1.02E-02
52	GO:0003913: DNA photolyase activity	1.03E-02
53	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	1.03E-02
54	GO:0070569: uridylyltransferase activity	1.03E-02
55	GO:0004659: prenyltransferase activity	1.03E-02
56	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	1.03E-02
57	GO:0004550: nucleoside diphosphate kinase activity	1.03E-02
58	GO:0016209: antioxidant activity	1.03E-02
59	GO:0003924: GTPase activity	1.09E-02
60	GO:0003746: translation elongation factor activity	1.23E-02
61	GO:0016831: carboxy-lyase activity	1.23E-02
62	GO:0000166: nucleotide binding	1.27E-02
63	GO:0016868: intramolecular transferase activity, phosphotransferases	1.41E-02
64	GO:0016987: sigma factor activity	1.41E-02
65	GO:0000287: magnesium ion binding	1.78E-02
66	GO:0008173: RNA methyltransferase activity	1.83E-02
67	GO:0008810: cellulase activity	2.29E-02
68	GO:0004525: ribonuclease III activity	2.29E-02
69	GO:0003723: RNA binding	2.76E-02
70	GO:0043022: ribosome binding	2.78E-02
71	GO:0051087: chaperone binding	2.78E-02
72	GO:0017111: nucleoside-triphosphatase activity	3.26E-02
73	GO:0008266: poly(U) RNA binding	3.32E-02
74	GO:0015095: magnesium ion transmembrane transporter activity	3.89E-02
75	GO:0046873: metal ion transmembrane transporter activity	3.89E-02
76	GO:0008233: peptidase activity	3.98E-02
77	GO:0046914: transition metal ion binding	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0031361: integral component of thylakoid membrane	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0055035: plastid thylakoid membrane	0.00E+00
4	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
5	GO:0009507: chloroplast	5.98E-43
6	GO:0009570: chloroplast stroma	6.38E-33
7	GO:0009941: chloroplast envelope	3.95E-19
8	GO:0009535: chloroplast thylakoid membrane	1.27E-13
9	GO:0009534: chloroplast thylakoid	1.15E-08
10	GO:0009579: thylakoid	1.84E-07
11	GO:0009840: chloroplastic endopeptidase Clp complex	3.55E-07
12	GO:0009532: plastid stroma	6.30E-06
13	GO:0005840: ribosome	4.64E-04
14	GO:0009295: nucleoid	7.14E-04
15	GO:0009543: chloroplast thylakoid lumen	1.15E-03
16	GO:0009526: plastid envelope	1.79E-03
17	GO:0005960: glycine cleavage complex	1.79E-03
18	GO:0044445: cytosolic part	1.79E-03
19	GO:0080085: signal recognition particle, chloroplast targeting	1.79E-03
20	GO:0009528: plastid inner membrane	1.79E-03
21	GO:0000311: plastid large ribosomal subunit	1.79E-03
22	GO:0009527: plastid outer membrane	1.79E-03
23	GO:0048500: signal recognition particle	1.98E-03
24	GO:0010319: stromule	2.20E-03
25	GO:0031977: thylakoid lumen	2.44E-03
26	GO:0030529: intracellular ribonucleoprotein complex	3.44E-03
27	GO:0055028: cortical microtubule	6.92E-03
28	GO:0042651: thylakoid membrane	9.14E-03
29	GO:0009508: plastid chromosome	1.41E-02
30	GO:0019898: extrinsic component of membrane	1.83E-02
31	GO:0031225: anchored component of membrane	1.83E-02
32	GO:0019013: viral nucleocapsid	2.01E-02
33	GO:0009536: plastid	2.13E-02
34	GO:0009654: photosystem II oxygen evolving complex	2.29E-02
35	GO:0009706: chloroplast inner membrane	2.73E-02
36	GO:0005759: mitochondrial matrix	3.28E-02
37	GO:0009523: photosystem II	3.88E-02