co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G004352

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0055070: copper ion homeostasis	0.00E+00
2	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
3	GO:0042550: photosystem I stabilization	0.00E+00
4	GO:2000505: regulation of energy homeostasis	0.00E+00
5	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
6	GO:0042221: response to chemical	0.00E+00
7	GO:0042549: photosystem II stabilization	0.00E+00
8	GO:0030243: cellulose metabolic process	0.00E+00
9	GO:0030388: fructose 1,6-bisphosphate metabolic process	0.00E+00
10	GO:0015979: photosynthesis	3.28E-22
11	GO:0010207: photosystem II assembly	3.50E-14
12	GO:0009773: photosynthetic electron transport in photosystem I	4.45E-13
13	GO:0006364: rRNA processing	2.71E-11
14	GO:0009657: plastid organization	7.89E-10
15	GO:0043085: positive regulation of catalytic activity	8.46E-10
16	GO:0035304: regulation of protein dephosphorylation	2.77E-09
17	GO:0010196: nonphotochemical quenching	2.51E-07
18	GO:0006098: pentose-phosphate shunt	4.75E-07
19	GO:0009765: photosynthesis, light harvesting	4.78E-07
20	GO:0070838: divalent metal ion transport	7.24E-07
21	GO:0009772: photosynthetic electron transport in photosystem II	7.24E-07
22	GO:0009637: response to blue light	1.49E-06
23	GO:0010114: response to red light	2.21E-06
24	GO:0030003: cellular cation homeostasis	3.16E-06
25	GO:0010218: response to far red light	3.18E-06
26	GO:0010027: thylakoid membrane organization	3.63E-06
27	GO:0018298: protein-chromophore linkage	3.84E-06
28	GO:0019252: starch biosynthetic process	4.09E-06
29	GO:0015995: chlorophyll biosynthetic process	9.52E-06
30	GO:0042742: defense response to bacterium	9.97E-06
31	GO:0006814: sodium ion transport	1.94E-05
32	GO:0019344: cysteine biosynthetic process	3.69E-05
33	GO:0016117: carotenoid biosynthetic process	3.69E-05
34	GO:0019761: glucosinolate biosynthetic process	4.30E-05
35	GO:0009595: detection of biotic stimulus	4.64E-05
36	GO:0009409: response to cold	4.97E-05
37	GO:0000023: maltose metabolic process	7.47E-05
38	GO:0043900: regulation of multi-organism process	8.49E-05
39	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	9.73E-05
40	GO:0010155: regulation of proton transport	1.16E-04
41	GO:0009624: response to nematode	1.47E-04
42	GO:0046777: protein autophosphorylation	1.65E-04
43	GO:0015986: ATP synthesis coupled proton transport	1.95E-04
44	GO:0010205: photoinhibition	2.01E-04
45	GO:0010310: regulation of hydrogen peroxide metabolic process	2.79E-04
46	GO:0071482: cellular response to light stimulus	3.90E-04
47	GO:0006543: glutamine catabolic process	3.90E-04
48	GO:0009590: detection of gravity	3.90E-04
49	GO:0009768: photosynthesis, light harvesting in photosystem I	3.90E-04
50	GO:0019676: ammonia assimilation cycle	3.90E-04
51	GO:0006006: glucose metabolic process	5.87E-04
52	GO:0009697: salicylic acid biosynthetic process	5.87E-04
53	GO:0006754: ATP biosynthetic process	5.87E-04
54	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	7.17E-04
55	GO:0042819: vitamin B6 biosynthetic process	9.14E-04
56	GO:0010236: plastoquinone biosynthetic process	9.14E-04
57	GO:0009744: response to sucrose	1.12E-03
58	GO:0006636: unsaturated fatty acid biosynthetic process	1.19E-03
59	GO:0006733: oxidoreduction coenzyme metabolic process	1.55E-03
60	GO:0005986: sucrose biosynthetic process	1.55E-03
61	GO:0042823: pyridoxal phosphate biosynthetic process	1.55E-03
62	GO:0019760: glucosinolate metabolic process	1.55E-03
63	GO:0015992: proton transport	1.57E-03
64	GO:0009664: plant-type cell wall organization	1.77E-03
65	GO:0006612: protein targeting to membrane	1.99E-03
66	GO:0010103: stomatal complex morphogenesis	1.99E-03
67	GO:0010200: response to chitin	1.99E-03
68	GO:0010363: regulation of plant-type hypersensitive response	2.21E-03
69	GO:0050821: protein stabilization	2.23E-03
70	GO:0016485: protein processing	2.23E-03
71	GO:0071704: organic substance metabolic process	2.23E-03
72	GO:0046034: ATP metabolic process	2.23E-03
73	GO:0019216: regulation of lipid metabolic process	2.23E-03
74	GO:0009117: nucleotide metabolic process	2.23E-03
75	GO:0031348: negative regulation of defense response	2.45E-03
76	GO:0009867: jasmonic acid mediated signaling pathway	2.45E-03
77	GO:0006541: glutamine metabolic process	3.01E-03
78	GO:0019748: secondary metabolic process	3.01E-03
79	GO:0009902: chloroplast relocation	3.60E-03
80	GO:0000165: MAPK cascade	3.60E-03
81	GO:0009693: ethylene biosynthetic process	3.92E-03
82	GO:0046688: response to copper ion	3.92E-03
83	GO:0017148: negative regulation of translation	3.92E-03
84	GO:0006662: glycerol ether metabolic process	4.64E-03
85	GO:0010206: photosystem II repair	4.87E-03
86	GO:0009106: lipoate metabolic process	4.87E-03
87	GO:0006766: vitamin metabolic process	4.87E-03
88	GO:0009411: response to UV	4.87E-03
89	GO:0009108: coenzyme biosynthetic process	4.87E-03
90	GO:0080167: response to karrikin	5.25E-03
91	GO:0006811: ion transport	5.38E-03
92	GO:0006099: tricarboxylic acid cycle	5.78E-03
93	GO:0005985: sucrose metabolic process	5.90E-03
94	GO:0046939: nucleotide phosphorylation	5.90E-03
95	GO:0000272: polysaccharide catabolic process	5.90E-03
96	GO:0015977: carbon fixation	7.01E-03
97	GO:0009072: aromatic amino acid family metabolic process	7.01E-03
98	GO:0009658: chloroplast organization	7.57E-03
99	GO:0016311: dephosphorylation	8.05E-03
100	GO:0005983: starch catabolic process	8.18E-03
101	GO:0009832: plant-type cell wall biogenesis	8.18E-03
102	GO:0006354: DNA-templated transcription, elongation	9.42E-03
103	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.07E-02
104	GO:0006546: glycine catabolic process	1.07E-02
105	GO:0042631: cellular response to water deprivation	1.21E-02
106	GO:0031408: oxylipin biosynthetic process	1.35E-02
107	GO:0044262: cellular carbohydrate metabolic process	1.35E-02
108	GO:0006108: malate metabolic process	1.35E-02
109	GO:0016049: cell growth	1.65E-02
110	GO:0006833: water transport	1.65E-02
111	GO:0009750: response to fructose	1.65E-02
112	GO:0050832: defense response to fungus	1.74E-02
113	GO:0009749: response to glucose	1.81E-02
114	GO:0016126: sterol biosynthetic process	1.81E-02
115	GO:0019684: photosynthesis, light reaction	1.81E-02
116	GO:0005975: carbohydrate metabolic process	1.85E-02
117	GO:0009966: regulation of signal transduction	1.97E-02
118	GO:0006352: DNA-templated transcription, initiation	2.14E-02
119	GO:0010193: response to ozone	2.14E-02
120	GO:0006139: nucleobase-containing compound metabolic process	2.32E-02
121	GO:0009817: defense response to fungus, incompatible interaction	2.50E-02
122	GO:0009695: jasmonic acid biosynthetic process	2.50E-02
123	GO:0015991: ATP hydrolysis coupled proton transport	2.68E-02
124	GO:0006520: cellular amino acid metabolic process	3.26E-02
125	GO:0030163: protein catabolic process	3.47E-02
126	GO:0009735: response to cytokinin	3.67E-02
127	GO:0045454: cell redox homeostasis	3.94E-02
128	GO:0006979: response to oxidative stress	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009496: plastoquinol--plastocyanin reductase activity	0.00E+00
2	GO:0010242: oxygen evolving activity	0.00E+00
3	GO:0004359: glutaminase activity	0.00E+00
4	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
5	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
6	GO:0004614: phosphoglucomutase activity	0.00E+00
7	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
8	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
9	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
10	GO:0019200: carbohydrate kinase activity	0.00E+00
11	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
12	GO:0015131: oxaloacetate transmembrane transporter activity	0.00E+00
13	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
14	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
15	GO:0016168: chlorophyll binding	7.96E-08
16	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.70E-05
17	GO:0015140: malate transmembrane transporter activity	3.90E-04
18	GO:0050307: sucrose-phosphate phosphatase activity	3.90E-04
19	GO:0004750: ribulose-phosphate 3-epimerase activity	3.90E-04
20	GO:0008974: phosphoribulokinase activity	3.90E-04
21	GO:0016679: oxidoreductase activity, acting on diphenols and related substances as donors	3.90E-04
22	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	9.14E-04
23	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	9.14E-04
24	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	9.14E-04
25	GO:0004659: prenyltransferase activity	2.23E-03
26	GO:0004332: fructose-bisphosphate aldolase activity	2.23E-03
27	GO:0008964: phosphoenolpyruvate carboxylase activity	2.23E-03
28	GO:0004017: adenylate kinase activity	3.01E-03
29	GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives	3.01E-03
30	GO:0016868: intramolecular transferase activity, phosphotransferases	3.01E-03
31	GO:0016987: sigma factor activity	3.01E-03
32	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.64E-03
33	GO:0016615: malate dehydrogenase activity	4.87E-03
34	GO:0019201: nucleotide kinase activity	4.87E-03
35	GO:0008121: ubiquinol-cytochrome-c reductase activity	4.87E-03
36	GO:0019205: nucleobase-containing compound kinase activity	4.87E-03
37	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	5.90E-03
38	GO:0008047: enzyme activator activity	5.90E-03
39	GO:0030060: L-malate dehydrogenase activity	5.90E-03
40	GO:0016776: phosphotransferase activity, phosphate group as acceptor	7.01E-03
41	GO:0042578: phosphoric ester hydrolase activity	7.01E-03
42	GO:0008266: poly(U) RNA binding	7.01E-03
43	GO:0016791: phosphatase activity	7.57E-03
44	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.18E-03
45	GO:0005215: transporter activity	8.30E-03
46	GO:0050661: NADP binding	9.08E-03
47	GO:0003993: acid phosphatase activity	1.21E-02
48	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.50E-02
49	GO:0015035: protein disulfide oxidoreductase activity	1.59E-02
50	GO:0051287: NAD binding	1.74E-02
51	GO:0008080: N-acetyltransferase activity	1.81E-02
52	GO:0051537: 2 iron, 2 sulfur cluster binding	2.50E-02
53	GO:0004222: metalloendopeptidase activity	2.87E-02
54	GO:0051539: 4 iron, 4 sulfur cluster binding	3.47E-02
55	GO:0008483: transaminase activity	3.47E-02
56	GO:0003824: catalytic activity	3.75E-02
57	GO:0000287: magnesium ion binding	4.67E-02
58	GO:0005198: structural molecule activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0030093: chloroplast photosystem I	0.00E+00
3	GO:0009279: cell outer membrane	0.00E+00
4	GO:0009579: thylakoid	1.32E-32
5	GO:0009507: chloroplast	5.99E-24
6	GO:0009535: chloroplast thylakoid membrane	9.36E-24
7	GO:0009941: chloroplast envelope	2.32E-23
8	GO:0010287: plastoglobule	6.76E-17
9	GO:0009522: photosystem I	4.07E-15
10	GO:0031977: thylakoid lumen	9.52E-13
11	GO:0009523: photosystem II	9.69E-12
12	GO:0009570: chloroplast stroma	2.35E-11
13	GO:0010319: stromule	3.78E-11
14	GO:0009543: chloroplast thylakoid lumen	1.56E-08
15	GO:0048046: apoplast	1.32E-07
16	GO:0009538: photosystem I reaction center	2.51E-07
17	GO:0019898: extrinsic component of membrane	1.64E-06
18	GO:0009654: photosystem II oxygen evolving complex	3.16E-06
19	GO:0009534: chloroplast thylakoid	9.52E-06
20	GO:0016020: membrane	1.57E-05
21	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.01E-04
22	GO:0009517: PSII associated light-harvesting complex II	3.90E-04
23	GO:0009533: chloroplast stromal thylakoid	9.14E-04
24	GO:0042651: thylakoid membrane	1.02E-03
25	GO:0009508: plastid chromosome	3.01E-03
26	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	5.90E-03
27	GO:0009295: nucleoid	1.07E-02
28	GO:0009706: chloroplast inner membrane	2.87E-02
29	GO:0009536: plastid	4.31E-02